Wall clock time and date at job start Mon Mar 30 2020 03:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47843 * 110.99936 * 2 1 4 4 C 1.54907 * 104.79424 * 146.36456 * 3 2 1 5 5 C 1.55142 * 101.65257 * 322.92526 * 4 3 2 6 6 H 1.09003 * 110.85634 * 277.20146 * 5 4 3 7 7 C 1.53007 * 110.70478 * 154.03947 * 5 4 3 8 8 C 1.52997 * 109.62902 * 69.24535 * 7 5 4 9 9 O 1.43372 * 109.50676 * 308.93011 * 7 5 4 10 10 C 1.44193 * 107.28443 * 239.52721 * 9 7 5 11 11 C 1.54915 * 103.07933 * 338.56013 * 10 9 7 12 12 H 1.08996 * 111.01354 * 277.44171 * 11 10 9 13 13 C 1.50705 * 110.97596 * 153.67136 * 11 10 9 14 14 H 1.08005 * 119.99806 * 6.21475 * 13 11 10 15 15 C 1.37874 * 119.99575 * 186.21654 * 13 11 10 16 16 N 1.31516 * 119.99530 * 180.02562 * 15 13 11 17 17 Si 1.86794 * 120.00479 * 359.97438 * 15 13 11 18 18 H 1.48500 * 109.46870 * 90.00085 * 17 15 13 19 19 H 1.48498 * 109.47472 * 210.00312 * 17 15 13 20 20 H 1.48504 * 109.47119 * 330.00742 * 17 15 13 21 21 O 1.43747 * 109.62987 * 189.64095 * 7 5 4 22 22 C 1.47448 * 110.99925 * 120.84247 * 2 1 3 23 23 H 1.09003 * 109.47004 * 299.16214 * 1 2 3 24 24 H 1.09001 * 109.47000 * 59.15837 * 1 2 3 25 25 H 1.08998 * 109.47396 * 179.16100 * 1 2 3 26 26 H 1.08995 * 110.37019 * 265.19266 * 3 2 1 27 27 H 1.08993 * 110.37804 * 27.42342 * 3 2 1 28 28 H 1.09002 * 110.99139 * 204.83405 * 4 3 2 29 29 H 1.09001 * 110.99200 * 81.01858 * 4 3 2 30 30 H 1.09002 * 109.47153 * 179.69198 * 8 7 5 31 31 H 1.09001 * 109.46832 * 59.69389 * 8 7 5 32 32 H 1.09004 * 109.47261 * 299.69370 * 8 7 5 33 33 H 1.09003 * 110.69329 * 220.16796 * 10 9 7 34 34 H 1.08995 * 110.84568 * 97.03377 * 10 9 7 35 35 H 0.97005 * 119.99938 * 179.97438 * 16 15 13 36 36 H 1.08991 * 109.89000 * 117.33453 * 22 2 1 37 37 H 1.09001 * 110.02229 * 356.22044 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3027 0.8296 5 6 2.9158 0.2822 1.9315 6 1 2.3752 0.7725 2.7412 7 6 4.1570 -0.4338 2.4681 8 6 5.0138 0.5511 3.2660 9 8 4.9190 -0.9573 1.3723 10 6 5.0046 -2.3852 1.5534 11 6 4.7333 -2.5634 3.0682 12 1 5.6395 -2.3949 3.6500 13 6 4.1559 -3.9253 3.3563 14 1 4.0802 -4.6579 2.5663 15 6 3.7242 -4.2359 4.6283 16 7 3.2207 -5.4245 4.8798 17 14 3.8556 -2.9690 5.9947 18 1 2.6124 -2.1581 6.0391 19 1 4.0419 -3.6611 7.2953 20 1 5.0171 -2.0806 5.7359 21 8 3.7571 -1.5233 3.3163 22 6 1.9974 -0.7057 1.1819 23 1 -0.3633 0.5008 0.8974 24 1 -0.3633 0.5269 -0.8824 25 1 -0.3634 -1.0275 -0.0150 26 1 2.2148 1.7037 -1.0182 27 1 1.2882 2.0596 0.4706 28 1 3.5496 2.2720 1.2639 29 1 4.1302 0.9281 0.2243 30 1 5.8943 0.0372 3.6516 31 1 4.4316 0.9482 4.0976 32 1 5.3258 1.3696 2.6173 33 1 5.9999 -2.7472 1.2952 34 1 4.2449 -2.8973 0.9631 35 1 2.9173 -5.6432 5.7749 36 1 2.5697 -1.5784 0.8675 37 1 1.1771 -1.0141 1.8300 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258667416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:52 Heat of formation + Delta-G solvation = -82.841184 kcal Electronic energy + Delta-G solvation = -18889.486461 eV Core-core repulsion = 16052.954277 eV Total energy + Delta-G solvation = -2836.532184 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.11346 -38.09173 -34.18496 -33.25792 -32.30541 -30.15212 -28.53197 -28.29708 -25.32188 -24.85363 -22.16148 -21.14101 -20.55422 -19.48401 -17.27864 -16.46988 -15.77698 -15.55722 -15.13596 -14.43051 -14.03537 -13.69887 -13.49778 -13.20429 -12.93397 -12.82130 -12.57784 -12.18087 -11.87608 -11.74883 -11.58945 -11.39978 -11.19883 -11.07590 -10.85734 -10.68044 -10.53488 -10.30584 -9.77938 -9.69233 -9.03226 -8.78772 -8.64636 -8.11365 -6.23523 -4.34694 3.32613 3.37496 3.46917 4.19498 4.24339 4.38313 4.61037 4.82039 4.96408 5.12260 5.33260 5.44959 5.47649 5.55832 5.60536 5.68203 5.76533 5.85583 5.85761 5.93221 5.94807 6.02974 6.05892 6.14706 6.24548 6.35770 6.44401 6.46936 6.53404 6.77085 7.04530 7.15295 7.26027 7.48071 8.09021 8.26878 8.74882 9.37221 10.86336 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027628 B = 0.008612 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.228901 B = 3250.382569 C = 3535.077524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.535 5.535 3 C 0.043 3.957 4 C -0.117 4.117 5 C -0.108 4.108 6 H 0.079 0.921 7 C 0.259 3.741 8 C -0.167 4.167 9 O -0.388 6.388 10 C 0.035 3.965 11 C 0.145 3.855 12 H 0.043 0.957 13 C -0.522 4.522 14 H 0.085 0.915 15 C 0.087 3.913 16 N -0.885 5.885 17 Si 0.899 3.101 18 H -0.273 1.273 19 H -0.296 1.296 20 H -0.266 1.266 21 O -0.378 6.378 22 C 0.057 3.943 23 H 0.023 0.977 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.268 0.732 36 H 0.088 0.912 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.815 13.070 -6.120 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.259 5.259 3 C -0.085 4.085 4 C -0.155 4.155 5 C -0.128 4.128 6 H 0.098 0.902 7 C 0.181 3.819 8 C -0.225 4.225 9 O -0.310 6.310 10 C -0.041 4.041 11 C 0.090 3.910 12 H 0.060 0.940 13 C -0.558 4.558 14 H 0.103 0.897 15 C -0.119 4.119 16 N -0.522 5.522 17 Si 0.728 3.272 18 H -0.199 1.199 19 H -0.223 1.223 20 H -0.191 1.191 21 O -0.300 6.300 22 C -0.070 4.070 23 H 0.042 0.958 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.844 12.795 -6.469 14.362 hybrid contribution -0.324 0.865 1.624 1.868 sum -1.168 13.661 -4.845 14.541 Atomic orbital electron populations 1.22525 0.88252 1.02071 0.99950 1.63612 1.07425 1.13919 1.40924 1.23029 0.95614 0.89718 1.00148 1.22683 0.98147 0.98128 0.96578 1.22651 0.95976 0.96440 0.97746 0.90242 1.22865 0.88387 0.88953 0.81682 1.22353 1.00605 0.99409 1.00137 1.88721 1.74072 1.21543 1.46623 1.24158 1.01549 0.79871 0.98524 1.22011 0.89596 0.88445 0.90960 0.93976 1.20769 1.43987 0.94037 0.97038 0.89654 1.25014 0.92864 0.95057 0.98923 1.69909 1.39786 1.20429 1.22050 0.86437 0.79830 0.81130 0.79843 1.19878 1.22285 1.19125 1.89397 1.53048 1.25156 1.62371 1.22745 0.97640 0.97375 0.89248 0.95813 0.91845 0.91321 0.90554 0.94107 0.91319 0.89295 0.91995 0.91616 0.91688 0.89948 0.91094 0.92221 0.89357 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.12 60.07 0.55 0.82 16 2 N -0.53 -8.24 5.44 -239.52 -1.30 -9.55 16 3 C 0.04 0.56 6.73 -2.30 -0.02 0.55 16 4 C -0.12 -1.64 5.76 -24.59 -0.14 -1.78 16 5 C -0.11 -1.83 2.57 -88.79 -0.23 -2.05 16 6 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 7 C 0.26 4.97 0.72 -26.73 -0.02 4.95 16 8 C -0.17 -2.79 9.07 37.16 0.34 -2.45 16 9 O -0.39 -7.58 9.21 -59.04 -0.54 -8.12 16 10 C 0.03 0.72 6.98 38.17 0.27 0.99 16 11 C 0.14 3.45 2.65 -26.87 -0.07 3.38 16 12 H 0.04 1.02 7.41 -51.93 -0.38 0.63 16 13 C -0.52 -14.47 9.42 -34.44 -0.32 -14.79 16 14 H 0.09 2.50 8.03 -52.48 -0.42 2.08 16 15 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 16 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 17 Si 0.90 22.57 26.35 -169.99 -4.48 18.09 16 18 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.27 -6.47 6.62 56.52 0.37 -6.10 16 21 O -0.38 -8.82 8.26 -59.04 -0.49 -9.31 16 22 C 0.06 1.02 6.04 -2.83 -0.02 1.00 16 23 H 0.02 0.30 8.10 -51.93 -0.42 -0.12 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.49 7.78 -51.93 -0.40 0.09 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.35 7.08 -51.93 -0.37 0.99 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.92 7.62 -51.93 -0.40 0.53 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.07 1.49 7.29 -51.93 -0.38 1.11 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.09 1.79 6.13 -51.93 -0.32 1.48 16 37 H 0.06 1.03 7.59 -51.93 -0.39 0.64 16 LS Contribution 289.06 15.07 4.36 4.36 Total: -1.00 -29.85 289.06 -7.48 -37.33 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.03 Total: -0.04 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 0.24 Total: -7.01 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: -0.53 Total: -35.30 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -1.03 Total: -17.43 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.48 Total: 18.09 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.85 -7.48 -37.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258667416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.512 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds