Wall clock time and date at job start Mon Mar 30 2020 03:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47843 * 110.99936 * 2 1 4 4 C 1.54907 * 104.79424 * 146.36456 * 3 2 1 5 5 C 1.55142 * 101.65257 * 322.92526 * 4 3 2 6 6 H 1.09003 * 110.85634 * 277.20146 * 5 4 3 7 7 C 1.53007 * 110.70478 * 154.03947 * 5 4 3 8 8 C 1.52997 * 109.62902 * 69.24535 * 7 5 4 9 9 O 1.43372 * 109.50676 * 308.93011 * 7 5 4 10 10 C 1.44193 * 107.28443 * 239.52721 * 9 7 5 11 11 C 1.54915 * 103.07933 * 338.56013 * 10 9 7 12 12 H 1.08996 * 111.01354 * 277.44171 * 11 10 9 13 13 C 1.50705 * 110.97596 * 153.67136 * 11 10 9 14 14 H 1.08005 * 119.99806 * 6.21475 * 13 11 10 15 15 C 1.37874 * 119.99575 * 186.21654 * 13 11 10 16 16 N 1.31516 * 119.99530 * 180.02562 * 15 13 11 17 17 Si 1.86794 * 120.00479 * 359.97438 * 15 13 11 18 18 H 1.48500 * 109.46870 * 90.00085 * 17 15 13 19 19 H 1.48498 * 109.47472 * 210.00312 * 17 15 13 20 20 H 1.48504 * 109.47119 * 330.00742 * 17 15 13 21 21 O 1.43747 * 109.62987 * 189.64095 * 7 5 4 22 22 C 1.47448 * 110.99925 * 120.84247 * 2 1 3 23 23 H 1.09003 * 109.47004 * 299.16214 * 1 2 3 24 24 H 1.09001 * 109.47000 * 59.15837 * 1 2 3 25 25 H 1.08998 * 109.47396 * 179.16100 * 1 2 3 26 26 H 1.08995 * 110.37019 * 265.19266 * 3 2 1 27 27 H 1.08993 * 110.37804 * 27.42342 * 3 2 1 28 28 H 1.09002 * 110.99139 * 204.83405 * 4 3 2 29 29 H 1.09001 * 110.99200 * 81.01858 * 4 3 2 30 30 H 1.09002 * 109.47153 * 179.69198 * 8 7 5 31 31 H 1.09001 * 109.46832 * 59.69389 * 8 7 5 32 32 H 1.09004 * 109.47261 * 299.69370 * 8 7 5 33 33 H 1.09003 * 110.69329 * 220.16796 * 10 9 7 34 34 H 1.08995 * 110.84568 * 97.03377 * 10 9 7 35 35 H 0.97005 * 119.99938 * 179.97438 * 16 15 13 36 36 H 1.08991 * 109.89000 * 117.33453 * 22 2 1 37 37 H 1.09001 * 110.02229 * 356.22044 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3027 0.8296 5 6 2.9158 0.2822 1.9315 6 1 2.3752 0.7725 2.7412 7 6 4.1570 -0.4338 2.4681 8 6 5.0138 0.5511 3.2660 9 8 4.9190 -0.9573 1.3723 10 6 5.0046 -2.3852 1.5534 11 6 4.7333 -2.5634 3.0682 12 1 5.6395 -2.3949 3.6500 13 6 4.1559 -3.9253 3.3563 14 1 4.0802 -4.6579 2.5663 15 6 3.7242 -4.2359 4.6283 16 7 3.2207 -5.4245 4.8798 17 14 3.8556 -2.9690 5.9947 18 1 2.6124 -2.1581 6.0391 19 1 4.0419 -3.6611 7.2953 20 1 5.0171 -2.0806 5.7359 21 8 3.7571 -1.5233 3.3163 22 6 1.9974 -0.7057 1.1819 23 1 -0.3633 0.5008 0.8974 24 1 -0.3633 0.5269 -0.8824 25 1 -0.3634 -1.0275 -0.0150 26 1 2.2148 1.7037 -1.0182 27 1 1.2882 2.0596 0.4706 28 1 3.5496 2.2720 1.2639 29 1 4.1302 0.9281 0.2243 30 1 5.8943 0.0372 3.6516 31 1 4.4316 0.9482 4.0976 32 1 5.3258 1.3696 2.6173 33 1 5.9999 -2.7472 1.2952 34 1 4.2449 -2.8973 0.9631 35 1 2.9173 -5.6432 5.7749 36 1 2.5697 -1.5784 0.8675 37 1 1.1771 -1.0141 1.8300 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258667416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:52 Heat of formation + Delta-G solvation = -104.109940 kcal Electronic energy + Delta-G solvation = -18890.408743 eV Core-core repulsion = 16052.954277 eV Total energy + Delta-G solvation = -2837.454466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.65247 -39.39948 -35.92653 -34.98183 -34.03278 -31.57209 -29.97772 -29.77874 -26.86555 -26.35697 -23.51034 -22.93358 -21.78097 -20.91145 -19.30904 -18.11423 -17.38890 -16.81346 -16.60971 -16.27703 -15.43681 -15.15505 -14.99929 -14.69687 -14.52034 -14.35790 -14.10520 -13.58402 -13.30310 -13.20832 -13.05356 -12.83164 -12.68632 -12.50922 -12.25525 -12.15603 -12.02503 -11.78530 -11.69714 -11.47317 -10.94815 -10.74920 -10.32651 -9.28568 -8.43514 -6.58513 1.31173 1.37747 1.46467 2.29337 2.59986 2.90081 3.07210 3.32218 3.55711 3.75913 3.95716 4.03790 4.17329 4.30062 4.37326 4.41221 4.44070 4.49391 4.53591 4.60788 4.66658 4.72193 4.80769 4.92938 4.94397 5.02018 5.06636 5.12518 5.19496 5.23942 5.40386 5.49631 5.95773 6.06771 6.14650 6.40205 6.54995 7.16691 8.70192 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027628 B = 0.008612 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.228901 B = 3250.382569 C = 3535.077524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.550 5.550 3 C 0.044 3.956 4 C -0.108 4.108 5 C -0.110 4.110 6 H 0.087 0.913 7 C 0.247 3.753 8 C -0.164 4.164 9 O -0.383 6.383 10 C 0.044 3.956 11 C 0.147 3.853 12 H 0.046 0.954 13 C -0.530 4.530 14 H 0.053 0.947 15 C 0.036 3.964 16 N -0.929 5.929 17 Si 0.958 3.042 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.251 1.251 21 O -0.400 6.400 22 C 0.061 3.939 23 H 0.028 0.972 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.272 0.728 36 H 0.054 0.946 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 16.240 -6.301 17.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.274 5.274 3 C -0.083 4.083 4 C -0.145 4.145 5 C -0.129 4.129 6 H 0.106 0.894 7 C 0.170 3.830 8 C -0.222 4.222 9 O -0.305 6.305 10 C -0.032 4.032 11 C 0.091 3.909 12 H 0.064 0.936 13 C -0.567 4.567 14 H 0.071 0.929 15 C -0.166 4.166 16 N -0.568 5.568 17 Si 0.783 3.217 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.175 1.175 21 O -0.322 6.322 22 C -0.067 4.067 23 H 0.047 0.953 24 H 0.105 0.895 25 H 0.078 0.922 26 H 0.111 0.889 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.446 15.983 -6.668 17.324 hybrid contribution -0.488 -0.128 1.565 1.644 sum -0.933 15.855 -5.103 16.682 Atomic orbital electron populations 1.22566 0.86870 1.02040 1.01292 1.63567 1.08871 1.15477 1.39497 1.23129 0.95400 0.88572 1.01224 1.22667 0.98126 0.98401 0.95351 1.22699 0.94807 0.96726 0.98711 0.89440 1.23350 0.90019 0.88274 0.81400 1.22352 0.99829 0.99368 1.00621 1.88713 1.74188 1.20515 1.47034 1.23996 1.02384 0.80631 0.96204 1.21788 0.89176 0.86831 0.93064 0.93636 1.20981 1.43628 0.95804 0.96254 0.92918 1.25814 0.92666 0.96745 1.01345 1.70018 1.41566 1.22367 1.22847 0.85517 0.80011 0.78908 0.77236 1.20246 1.21429 1.17507 1.89303 1.53179 1.26247 1.63511 1.22546 0.97049 0.97137 0.90009 0.95306 0.89466 0.92249 0.88911 0.92303 0.88324 0.90525 0.92794 0.90591 0.88778 0.87635 0.92489 0.91932 0.92794 0.94311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.12 127.69 1.16 1.66 16 2 N -0.55 -16.06 5.44 -911.71 -4.96 -21.02 16 3 C 0.04 1.00 6.73 86.77 0.58 1.58 16 4 C -0.11 -2.63 5.76 31.98 0.18 -2.45 16 5 C -0.11 -3.47 2.57 -9.61 -0.02 -3.49 16 6 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 7 C 0.25 9.01 0.72 30.60 0.02 9.03 16 8 C -0.16 -4.92 9.07 71.98 0.65 -4.27 16 9 O -0.38 -14.41 9.21 -126.22 -1.16 -15.57 16 10 C 0.04 1.80 6.98 72.64 0.51 2.31 16 11 C 0.15 6.98 2.65 30.50 0.08 7.06 16 12 H 0.05 2.15 7.41 -2.39 -0.02 2.13 16 13 C -0.53 -30.24 9.42 25.60 0.24 -29.99 16 14 H 0.05 3.26 8.03 -2.91 -0.02 3.23 16 15 C 0.04 2.07 5.47 84.65 0.46 2.53 16 16 N -0.93 -57.30 13.96 21.45 0.30 -57.00 16 17 Si 0.96 46.57 26.35 68.60 1.81 48.37 16 18 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 19 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 20 H -0.25 -11.46 6.62 99.48 0.66 -10.81 16 21 O -0.40 -18.40 8.26 -126.22 -1.04 -19.44 16 22 C 0.06 2.14 6.04 86.64 0.52 2.67 16 23 H 0.03 0.66 8.10 -2.39 -0.02 0.65 16 24 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.06 1.16 7.78 -2.39 -0.02 1.14 16 28 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.08 2.09 7.08 -2.39 -0.02 2.08 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.09 2.26 7.62 -2.38 -0.02 2.24 16 33 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 34 H 0.06 2.48 7.29 -2.39 -0.02 2.46 16 35 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 36 H 0.05 2.26 6.13 -2.39 -0.01 2.24 16 37 H 0.04 1.45 7.59 -2.39 -0.02 1.43 16 Total: -1.00 -65.29 289.06 0.32 -64.97 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.98 Total: 13.04 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 4.40 Total: -13.35 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -4.66 Total: -78.02 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -2.20 Total: -35.01 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.81 Total: 48.37 kcal Total: -65.29 0.32 -64.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258667416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.142 kcal (2) G-P(sol) polarization free energy of solvation -65.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds