Wall clock time and date at job start Mon Mar 30 2020 03:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47446 * 111.00348 * 2 1 4 4 C 1.54311 * 107.23600 * 236.74314 * 3 2 1 5 5 C 1.55138 * 103.02100 * 337.71930 * 4 3 2 6 6 H 1.08997 * 110.98981 * 277.52066 * 5 4 3 7 7 C 1.53004 * 110.99273 * 153.74411 * 5 4 3 8 8 C 1.52998 * 109.62737 * 64.60470 * 7 5 4 9 9 O 1.43752 * 109.62842 * 304.36259 * 7 5 4 10 10 C 1.44995 * 104.92461 * 215.94120 * 9 7 5 11 11 C 1.54904 * 101.62965 * 35.87012 * 10 9 7 12 12 H 1.09002 * 110.69556 * 83.15000 * 11 10 9 13 13 C 1.50700 * 110.69744 * 206.18051 * 11 10 9 14 14 H 1.07999 * 119.99988 * 357.62436 * 13 11 10 15 15 C 1.37885 * 120.00047 * 177.62616 * 13 11 10 16 16 N 1.31518 * 119.99792 * 359.72305 * 15 13 11 17 17 Si 1.86795 * 120.00009 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47163 * 59.99902 * 17 15 13 19 19 H 1.48495 * 109.47159 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47290 * 299.99897 * 17 15 13 21 21 O 1.43366 * 109.63242 * 184.99876 * 7 5 4 22 22 C 1.47848 * 110.99993 * 239.16050 * 2 1 3 23 23 H 1.08994 * 109.47380 * 60.12314 * 1 2 3 24 24 H 1.09002 * 109.46924 * 180.12585 * 1 2 3 25 25 H 1.08999 * 109.46859 * 300.12296 * 1 2 3 26 26 H 1.08998 * 109.88778 * 117.33676 * 3 2 1 27 27 H 1.09003 * 109.88581 * 356.15446 * 3 2 1 28 28 H 1.08999 * 110.71101 * 219.32823 * 4 3 2 29 29 H 1.09004 * 110.85329 * 96.16940 * 4 3 2 30 30 H 1.08999 * 109.46845 * 179.69832 * 8 7 5 31 31 H 1.09006 * 109.47102 * 299.69175 * 8 7 5 32 32 H 1.08998 * 109.47351 * 59.69480 * 8 7 5 33 33 H 1.09001 * 110.90003 * 277.84762 * 10 9 7 34 34 H 1.08995 * 111.14146 * 154.00396 * 10 9 7 35 35 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 36 36 H 1.09005 * 110.37091 * 27.53237 * 22 2 1 37 37 H 1.08997 * 110.37259 * 265.19295 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3765 0.0000 4 6 2.9159 1.5137 -1.2324 5 6 3.3047 0.0444 -1.5439 6 1 4.1306 -0.2831 -0.9125 7 6 3.6482 -0.1295 -3.0247 8 6 4.8972 0.6873 -3.3619 9 8 2.5474 0.3210 -3.8319 10 6 2.5211 -0.5828 -4.9654 11 6 2.9363 -1.9219 -4.3067 12 1 2.0760 -2.4078 -3.8462 13 6 3.5832 -2.8342 -5.3167 14 1 3.6642 -2.5263 -6.3487 15 6 4.0718 -4.0621 -4.9233 16 7 3.9781 -4.4348 -3.6655 17 14 4.8743 -5.1927 -6.1751 18 1 6.0516 -4.5130 -6.7729 19 1 5.3131 -6.4424 -5.5038 20 1 3.8969 -5.5212 -7.2438 21 8 3.8889 -1.5150 -3.3038 22 6 1.9988 -0.7076 -1.1851 23 1 -0.3634 0.5119 -0.8910 24 1 -0.3633 -1.0277 0.0023 25 1 -0.3633 0.5157 0.8889 26 1 2.5698 1.5539 0.9105 27 1 1.1756 2.0892 -0.0687 28 1 3.8001 2.1034 -0.9905 29 1 2.3771 1.9557 -2.0706 30 1 5.1426 0.5573 -4.4159 31 1 4.7071 1.7416 -3.1605 32 1 5.7314 0.3451 -2.7496 33 1 3.2447 -0.2791 -5.7218 34 1 1.5198 -0.6510 -5.3906 35 1 4.3215 -5.2988 -3.3889 36 1 1.2888 -0.6501 -2.0102 37 1 2.2147 -1.7477 -0.9410 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258667418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:54 Heat of formation + Delta-G solvation = -87.171920 kcal Electronic energy + Delta-G solvation = -18764.586972 eV Core-core repulsion = 15927.866994 eV Total energy + Delta-G solvation = -2836.719978 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.83206 -37.93985 -33.90313 -33.12036 -32.14224 -29.85685 -28.39556 -27.95107 -25.24832 -24.67154 -22.00373 -21.16527 -20.47454 -19.31880 -16.77231 -16.23566 -15.95693 -15.31300 -14.72900 -14.42016 -14.11690 -13.59423 -13.22989 -13.01182 -12.81315 -12.57926 -12.30219 -12.01537 -11.73914 -11.69952 -11.28242 -11.23952 -10.98340 -10.93239 -10.84347 -10.62960 -10.47093 -10.27938 -10.18611 -9.34641 -9.01384 -8.65355 -8.19059 -8.00148 -6.11471 -4.27114 3.26874 3.32198 3.33828 4.26933 4.32818 4.48416 4.90978 4.96442 5.01288 5.26276 5.42892 5.54844 5.62714 5.67264 5.77524 5.86770 5.96889 6.01478 6.01898 6.08190 6.10177 6.13212 6.23348 6.29734 6.38901 6.55048 6.63701 6.65524 6.71399 6.87447 7.22296 7.34016 7.42628 7.76603 8.10227 8.47907 8.84560 9.44974 10.95789 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033688 B = 0.007222 C = 0.006684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.955359 B = 3875.918034 C = 4187.839120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.538 5.538 3 C 0.043 3.957 4 C -0.133 4.133 5 C -0.092 4.092 6 H 0.091 0.909 7 C 0.255 3.745 8 C -0.163 4.163 9 O -0.394 6.394 10 C 0.020 3.980 11 C 0.190 3.810 12 H 0.041 0.959 13 C -0.543 4.543 14 H 0.065 0.935 15 C 0.081 3.919 16 N -0.858 5.858 17 Si 0.896 3.104 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 O -0.354 6.354 22 C 0.057 3.943 23 H 0.025 0.975 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.264 0.736 36 H 0.054 0.946 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.253 9.618 4.132 10.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.262 5.262 3 C -0.085 4.085 4 C -0.171 4.171 5 C -0.112 4.112 6 H 0.109 0.891 7 C 0.177 3.823 8 C -0.221 4.221 9 O -0.316 6.316 10 C -0.056 4.056 11 C 0.135 3.865 12 H 0.058 0.942 13 C -0.580 4.580 14 H 0.083 0.917 15 C -0.126 4.126 16 N -0.494 5.494 17 Si 0.723 3.277 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.200 1.200 21 O -0.276 6.276 22 C -0.070 4.070 23 H 0.044 0.956 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.057 9.263 4.881 10.908 hybrid contribution 0.190 -0.237 -1.489 1.520 sum -2.868 9.026 3.392 10.060 Atomic orbital electron populations 1.22493 0.88270 1.01929 0.99961 1.63624 1.07557 1.13798 1.41235 1.22799 0.97696 0.89701 0.98286 1.22772 0.99514 0.96920 0.97941 1.22566 0.98512 0.94663 0.95418 0.89102 1.22929 0.85333 0.84809 0.89266 1.22300 0.98046 0.99140 1.02568 1.89035 1.51942 1.54872 1.35739 1.24543 1.01341 0.90412 0.89340 1.21225 0.89501 0.90049 0.85717 0.94154 1.20941 1.42770 1.00469 0.93844 0.91698 1.25058 0.94691 0.97665 0.95209 1.70019 1.43319 1.20695 1.15318 0.86618 0.79952 0.79881 0.81299 1.19998 1.21042 1.19992 1.89253 1.57830 1.19528 1.60941 1.22954 0.95059 0.98732 0.90292 0.95628 0.91487 0.91966 0.90969 0.93209 0.91219 0.90661 0.92105 0.92329 0.91625 0.92071 0.89622 0.92599 0.92792 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.12 60.06 0.55 0.85 16 2 N -0.54 -8.69 5.44 -239.52 -1.30 -9.99 16 3 C 0.04 0.61 6.90 -2.84 -0.02 0.59 16 4 C -0.13 -2.00 5.46 -24.91 -0.14 -2.13 16 5 C -0.09 -1.68 2.67 -88.48 -0.24 -1.92 16 6 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 7 C 0.26 5.26 0.79 -26.73 -0.02 5.24 16 8 C -0.16 -2.95 9.02 37.16 0.34 -2.62 16 9 O -0.39 -8.12 9.13 -59.04 -0.54 -8.66 16 10 C 0.02 0.42 7.35 38.16 0.28 0.70 16 11 C 0.19 4.84 3.47 -26.88 -0.09 4.74 16 12 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 13 C -0.54 -14.85 8.82 -34.44 -0.30 -15.15 16 14 H 0.06 1.70 7.77 -52.49 -0.41 1.29 16 15 C 0.08 2.24 5.43 -17.82 -0.10 2.14 16 16 N -0.86 -24.95 13.04 55.43 0.72 -24.23 16 17 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 21 O -0.35 -9.04 10.01 -59.04 -0.59 -9.64 16 22 C 0.06 1.07 5.94 -2.30 -0.01 1.05 16 23 H 0.03 0.35 8.10 -51.93 -0.42 -0.07 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.63 7.58 -51.93 -0.39 0.24 16 28 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 29 H 0.07 1.19 7.26 -51.93 -0.38 0.82 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.91 7.46 -51.93 -0.39 0.52 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.28 8.03 -51.93 -0.42 0.86 16 34 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.05 1.08 6.92 -51.93 -0.36 0.72 16 37 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 296.27 15.07 4.46 4.46 Total: -1.00 -29.44 296.27 -8.15 -37.59 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.12 Total: 1.07 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 0.24 Total: -6.51 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: -0.58 Total: -34.22 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -1.13 Total: -18.30 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.44 -8.15 -37.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258667418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.587 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds