Wall clock time and date at job start Mon Mar 30 2020 03:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47446 * 111.00348 * 2 1 4 4 C 1.54311 * 107.23600 * 236.74314 * 3 2 1 5 5 C 1.55138 * 103.02100 * 337.71930 * 4 3 2 6 6 H 1.08997 * 110.98981 * 277.52066 * 5 4 3 7 7 C 1.53004 * 110.99273 * 153.74411 * 5 4 3 8 8 C 1.52998 * 109.62737 * 64.60470 * 7 5 4 9 9 O 1.43752 * 109.62842 * 304.36259 * 7 5 4 10 10 C 1.44995 * 104.92461 * 215.94120 * 9 7 5 11 11 C 1.54904 * 101.62965 * 35.87012 * 10 9 7 12 12 H 1.09002 * 110.69556 * 83.15000 * 11 10 9 13 13 C 1.50700 * 110.69744 * 206.18051 * 11 10 9 14 14 H 1.07999 * 119.99988 * 357.62436 * 13 11 10 15 15 C 1.37885 * 120.00047 * 177.62616 * 13 11 10 16 16 N 1.31518 * 119.99792 * 359.72305 * 15 13 11 17 17 Si 1.86795 * 120.00009 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47163 * 59.99902 * 17 15 13 19 19 H 1.48495 * 109.47159 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47290 * 299.99897 * 17 15 13 21 21 O 1.43366 * 109.63242 * 184.99876 * 7 5 4 22 22 C 1.47848 * 110.99993 * 239.16050 * 2 1 3 23 23 H 1.08994 * 109.47380 * 60.12314 * 1 2 3 24 24 H 1.09002 * 109.46924 * 180.12585 * 1 2 3 25 25 H 1.08999 * 109.46859 * 300.12296 * 1 2 3 26 26 H 1.08998 * 109.88778 * 117.33676 * 3 2 1 27 27 H 1.09003 * 109.88581 * 356.15446 * 3 2 1 28 28 H 1.08999 * 110.71101 * 219.32823 * 4 3 2 29 29 H 1.09004 * 110.85329 * 96.16940 * 4 3 2 30 30 H 1.08999 * 109.46845 * 179.69832 * 8 7 5 31 31 H 1.09006 * 109.47102 * 299.69175 * 8 7 5 32 32 H 1.08998 * 109.47351 * 59.69480 * 8 7 5 33 33 H 1.09001 * 110.90003 * 277.84762 * 10 9 7 34 34 H 1.08995 * 111.14146 * 154.00396 * 10 9 7 35 35 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 36 36 H 1.09005 * 110.37091 * 27.53237 * 22 2 1 37 37 H 1.08997 * 110.37259 * 265.19295 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3765 0.0000 4 6 2.9159 1.5137 -1.2324 5 6 3.3047 0.0444 -1.5439 6 1 4.1306 -0.2831 -0.9125 7 6 3.6482 -0.1295 -3.0247 8 6 4.8972 0.6873 -3.3619 9 8 2.5474 0.3210 -3.8319 10 6 2.5211 -0.5828 -4.9654 11 6 2.9363 -1.9219 -4.3067 12 1 2.0760 -2.4078 -3.8462 13 6 3.5832 -2.8342 -5.3167 14 1 3.6642 -2.5263 -6.3487 15 6 4.0718 -4.0621 -4.9233 16 7 3.9781 -4.4348 -3.6655 17 14 4.8743 -5.1927 -6.1751 18 1 6.0516 -4.5130 -6.7729 19 1 5.3131 -6.4424 -5.5038 20 1 3.8969 -5.5212 -7.2438 21 8 3.8889 -1.5150 -3.3038 22 6 1.9988 -0.7076 -1.1851 23 1 -0.3634 0.5119 -0.8910 24 1 -0.3633 -1.0277 0.0023 25 1 -0.3633 0.5157 0.8889 26 1 2.5698 1.5539 0.9105 27 1 1.1756 2.0892 -0.0687 28 1 3.8001 2.1034 -0.9905 29 1 2.3771 1.9557 -2.0706 30 1 5.1426 0.5573 -4.4159 31 1 4.7071 1.7416 -3.1605 32 1 5.7314 0.3451 -2.7496 33 1 3.2447 -0.2791 -5.7218 34 1 1.5198 -0.6510 -5.3906 35 1 4.3215 -5.2988 -3.3889 36 1 1.2888 -0.6501 -2.0102 37 1 2.2147 -1.7477 -0.9410 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258667418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:53 Heat of formation + Delta-G solvation = -107.389558 kcal Electronic energy + Delta-G solvation = -18765.463675 eV Core-core repulsion = 15927.866994 eV Total energy + Delta-G solvation = -2837.596681 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.46156 -39.35694 -35.76301 -34.85365 -33.87638 -31.34710 -29.76591 -29.72497 -26.78908 -26.31373 -23.47121 -23.07360 -21.75326 -20.85264 -18.83599 -17.87695 -17.44397 -16.87797 -16.58299 -15.94496 -15.62676 -15.05658 -14.81524 -14.46329 -14.24328 -14.17808 -13.97062 -13.68221 -13.42623 -13.06342 -12.80413 -12.78080 -12.54768 -12.49470 -12.39296 -12.20711 -12.13499 -11.92920 -11.58760 -11.20288 -10.82548 -10.65000 -10.02613 -9.31415 -8.20969 -6.44387 1.40985 1.43617 1.51539 2.37404 2.77007 2.93358 3.13363 3.52380 3.62350 3.75615 3.97704 4.23145 4.29368 4.31272 4.38009 4.47026 4.47876 4.52734 4.60582 4.67453 4.72903 4.77837 4.88506 4.93232 4.95283 4.96840 5.11713 5.17946 5.24440 5.37924 5.43647 5.64579 5.92945 6.05728 6.13574 6.55150 6.86314 7.32580 8.86882 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033688 B = 0.007222 C = 0.006684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.955359 B = 3875.918034 C = 4187.839120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.043 3.957 4 C -0.121 4.121 5 C -0.095 4.095 6 H 0.085 0.915 7 C 0.244 3.756 8 C -0.157 4.157 9 O -0.390 6.390 10 C 0.031 3.969 11 C 0.185 3.815 12 H 0.005 0.995 13 C -0.562 4.562 14 H 0.073 0.927 15 C 0.026 3.974 16 N -0.899 5.899 17 Si 0.966 3.034 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.262 1.262 21 O -0.387 6.387 22 C 0.065 3.935 23 H 0.025 0.975 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.264 0.736 36 H 0.034 0.966 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.033 11.390 3.947 12.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.273 5.273 3 C -0.084 4.084 4 C -0.159 4.159 5 C -0.114 4.114 6 H 0.103 0.897 7 C 0.166 3.834 8 C -0.215 4.215 9 O -0.311 6.311 10 C -0.045 4.045 11 C 0.130 3.870 12 H 0.023 0.977 13 C -0.599 4.599 14 H 0.091 0.909 15 C -0.177 4.177 16 N -0.535 5.535 17 Si 0.790 3.210 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.186 1.186 21 O -0.309 6.309 22 C -0.063 4.063 23 H 0.044 0.956 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.848 11.061 4.692 12.348 hybrid contribution 0.075 -0.748 -1.368 1.561 sum -2.772 10.313 3.324 11.184 Atomic orbital electron populations 1.22563 0.86836 1.02059 1.01236 1.63585 1.09038 1.15236 1.39420 1.22915 0.98349 0.88641 0.98500 1.22736 1.00703 0.94332 0.98168 1.22549 0.97843 0.97317 0.93723 0.89711 1.23342 0.86484 0.83003 0.90582 1.22265 0.96764 1.00481 1.01963 1.89021 1.52219 1.54325 1.35539 1.24421 1.02620 0.88180 0.89306 1.21046 0.88381 0.91878 0.85678 0.97723 1.21367 1.42574 1.01306 0.94660 0.90940 1.25968 0.95235 0.99369 0.97109 1.70172 1.44673 1.21180 1.17471 0.85508 0.79107 0.77569 0.78827 1.19357 1.20879 1.18644 1.89170 1.57899 1.22621 1.61172 1.22676 0.95351 0.97475 0.90749 0.95621 0.92146 0.89208 0.89263 0.91150 0.88564 0.91193 0.93109 0.89192 0.91258 0.91326 0.87554 0.92713 0.94715 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.12 127.69 1.16 1.72 16 2 N -0.55 -17.16 5.44 -911.72 -4.96 -22.12 16 3 C 0.04 1.09 6.90 86.64 0.60 1.68 16 4 C -0.12 -3.31 5.46 31.77 0.17 -3.14 16 5 C -0.09 -3.43 2.67 -9.41 -0.03 -3.45 16 6 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 7 C 0.24 9.99 0.79 30.60 0.02 10.02 16 8 C -0.16 -5.45 9.02 71.98 0.65 -4.80 16 9 O -0.39 -15.79 9.13 -126.22 -1.15 -16.94 16 10 C 0.03 1.30 7.35 72.63 0.53 1.84 16 11 C 0.19 9.74 3.47 30.50 0.11 9.84 16 12 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 13 C -0.56 -31.22 8.82 25.60 0.23 -31.00 16 14 H 0.07 3.80 7.77 -2.91 -0.02 3.77 16 15 C 0.03 1.48 5.43 84.66 0.46 1.94 16 16 N -0.90 -53.99 13.04 21.45 0.28 -53.71 16 17 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 21 O -0.39 -20.35 10.01 -126.22 -1.26 -21.61 16 22 C 0.07 2.52 5.94 86.77 0.52 3.04 16 23 H 0.03 0.67 8.10 -2.39 -0.02 0.65 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.07 1.51 7.58 -2.39 -0.02 1.49 16 28 H 0.10 2.14 8.13 -2.39 -0.02 2.12 16 29 H 0.07 2.01 7.26 -2.38 -0.02 1.99 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.09 2.53 7.46 -2.38 -0.02 2.51 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.07 2.80 8.03 -2.39 -0.02 2.78 16 34 H 0.11 3.99 8.14 -2.39 -0.02 3.98 16 35 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.03 1.45 6.92 -2.38 -0.02 1.43 16 37 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -64.86 296.27 0.38 -64.49 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 1.03 Total: 16.93 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 4.42 Total: -12.31 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -4.68 Total: -75.83 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -2.42 Total: -38.56 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -64.86 0.38 -64.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258667418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.902 kcal (2) G-P(sol) polarization free energy of solvation -64.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds