Wall clock time and date at job start Mon Mar 30 2020 03:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47907 * 110.99845 * 2 1 4 4 C 1.53990 * 107.05675 * 145.84878 * 3 2 1 5 5 C 1.54597 * 105.14143 * 358.77466 * 4 3 2 6 6 C 1.48529 * 111.00554 * 117.39837 * 2 1 3 7 7 H 1.08999 * 110.66437 * 318.71748 * 6 2 1 8 8 C 1.52999 * 110.66795 * 81.84230 * 6 2 1 9 9 C 1.52997 * 109.62992 * 178.41957 * 8 6 2 10 10 O 1.43746 * 109.63122 * 58.17180 * 8 6 2 11 11 C 1.44782 * 104.81745 * 215.80835 * 10 8 6 12 12 C 1.54908 * 101.72049 * 36.10522 * 11 10 8 13 13 H 1.09003 * 110.69568 * 82.83846 * 12 11 10 14 14 C 1.50704 * 110.69661 * 206.03930 * 12 11 10 15 15 H 1.07999 * 119.99981 * 355.11473 * 14 12 11 16 16 C 1.37872 * 120.00314 * 175.10946 * 14 12 11 17 17 N 1.31516 * 120.00015 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00273 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47185 * 90.00180 * 18 16 14 20 20 H 1.48501 * 109.47106 * 210.00386 * 18 16 14 21 21 H 1.48500 * 109.46691 * 329.99750 * 18 16 14 22 22 O 1.43377 * 109.63238 * 298.81107 * 8 6 2 23 23 H 1.08995 * 109.47398 * 60.12313 * 1 2 3 24 24 H 1.09000 * 109.47063 * 180.12844 * 1 2 3 25 25 H 1.09000 * 109.46598 * 300.12057 * 1 2 3 26 26 H 1.08996 * 109.91720 * 26.48982 * 3 2 1 27 27 H 1.09004 * 110.07880 * 265.28981 * 3 2 1 28 28 H 1.09005 * 110.30685 * 239.86077 * 4 3 2 29 29 H 1.09003 * 110.39778 * 117.73322 * 4 3 2 30 30 H 1.09000 * 110.72471 * 96.39833 * 5 4 3 31 31 H 1.09001 * 110.72634 * 219.68854 * 5 4 3 32 32 H 1.09001 * 109.47331 * 59.99406 * 9 8 6 33 33 H 1.09004 * 109.47093 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.46991 * 299.99780 * 9 8 6 35 35 H 1.09004 * 110.98023 * 277.99263 * 11 10 8 36 36 H 1.09006 * 110.97607 * 154.21552 * 11 10 8 37 37 H 0.96993 * 120.00365 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3660 0.8264 5 6 3.4492 -0.0929 1.3152 6 6 2.0014 -0.6381 1.2311 7 1 1.4238 -0.3323 2.1034 8 6 2.0054 -2.1617 1.0912 9 6 2.5939 -2.7923 2.3548 10 8 2.7968 -2.5400 -0.0476 11 6 2.1158 -3.6891 -0.6064 12 6 0.6301 -3.3214 -0.3672 13 1 0.2644 -2.6632 -1.1553 14 6 -0.2175 -4.5639 -0.2732 15 1 0.2240 -5.5335 -0.4501 16 6 -1.5567 -4.4630 0.0387 17 7 -2.0946 -3.2822 0.2537 18 14 -2.6072 -6.0032 0.1559 19 1 -2.5767 -6.5184 1.5483 20 1 -4.0063 -5.6779 -0.2210 21 1 -2.0738 -7.0374 -0.7666 22 8 0.6644 -2.6312 0.8982 23 1 -0.3634 0.5119 -0.8910 24 1 -0.3633 -1.0277 0.0023 25 1 -0.3632 0.5157 0.8889 26 1 1.2758 2.0562 0.4571 27 1 2.2116 1.7001 -1.0203 28 1 3.2136 2.0429 1.6766 29 1 4.1479 1.6461 0.2037 30 1 4.1115 -0.6540 0.6560 31 1 3.8124 -0.1199 2.3426 32 1 1.9901 -2.5095 3.2171 33 1 2.5959 -3.8775 2.2522 34 1 3.6156 -2.4391 2.4952 35 1 2.3836 -4.6000 -0.0709 36 1 2.3268 -3.7879 -1.6713 37 1 -3.0368 -3.2111 0.4728 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258727376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:37 Heat of formation + Delta-G solvation = -83.066039 kcal Electronic energy + Delta-G solvation = -19121.929516 eV Core-core repulsion = 16285.387582 eV Total energy + Delta-G solvation = -2836.541934 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.71516 -37.66918 -33.83908 -32.67964 -31.81873 -30.97988 -28.04545 -27.36463 -24.97598 -24.59460 -21.87890 -21.11245 -20.37889 -19.31049 -16.71403 -16.13310 -15.74755 -15.19684 -14.67221 -14.20726 -14.18220 -13.48988 -13.14784 -12.79789 -12.64246 -12.16972 -11.98790 -11.90056 -11.73728 -11.67580 -11.18296 -11.02132 -10.92294 -10.87636 -10.68914 -10.57315 -10.35736 -10.28213 -10.05924 -9.24720 -8.85695 -8.60265 -8.12413 -7.72076 -6.08336 -4.21568 3.27778 3.34529 3.36940 4.36499 4.46691 4.59811 4.85891 5.07893 5.16120 5.27787 5.43317 5.63793 5.75956 5.80555 5.90780 6.00469 6.08563 6.13102 6.16696 6.17686 6.20912 6.27497 6.29372 6.38726 6.49860 6.63521 6.67797 6.71627 6.94743 7.14207 7.50097 7.62165 7.68109 7.83918 8.19140 8.56012 8.90403 9.49592 10.99111 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035143 B = 0.008132 C = 0.007342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.560638 B = 3442.166789 C = 3812.891837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.499 5.499 3 C 0.033 3.967 4 C -0.129 4.129 5 C -0.115 4.115 6 C 0.068 3.932 7 H 0.057 0.943 8 C 0.262 3.738 9 C -0.165 4.165 10 O -0.378 6.378 11 C 0.021 3.979 12 C 0.194 3.806 13 H 0.044 0.956 14 C -0.540 4.540 15 H 0.065 0.935 16 C 0.081 3.919 17 N -0.860 5.860 18 Si 0.894 3.106 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 O -0.354 6.354 23 H 0.051 0.949 24 H 0.122 0.878 25 H 0.013 0.987 26 H 0.036 0.964 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.857 6.247 1.951 10.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.223 5.223 3 C -0.095 4.095 4 C -0.167 4.167 5 C -0.153 4.153 6 C -0.041 4.041 7 H 0.075 0.925 8 C 0.183 3.817 9 C -0.223 4.223 10 O -0.299 6.299 11 C -0.056 4.056 12 C 0.139 3.861 13 H 0.062 0.938 14 C -0.578 4.578 15 H 0.083 0.917 16 C -0.125 4.125 17 N -0.496 5.496 18 Si 0.721 3.279 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 O -0.276 6.276 23 H 0.070 0.930 24 H 0.140 0.860 25 H 0.031 0.969 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.849 6.213 1.578 10.134 hybrid contribution -1.007 -0.356 0.842 1.360 sum 6.842 5.857 2.420 9.326 Atomic orbital electron populations 1.22888 0.86465 1.06573 0.98341 1.64591 1.09084 1.12573 1.36052 1.22872 0.95424 0.91217 0.99977 1.22369 0.97913 0.97198 0.99209 1.22462 0.96749 0.95252 1.00829 1.23061 0.94890 0.94189 0.91926 0.92485 1.22861 0.81591 0.90606 0.86670 1.22327 1.00166 1.01854 0.97951 1.89054 1.49426 1.47211 1.44173 1.24447 0.94445 0.88350 0.98334 1.21196 0.89836 0.91911 0.83184 0.93809 1.21034 0.93647 0.92037 1.51055 0.91736 1.25012 0.97834 0.95987 0.93668 1.69981 1.12579 1.22642 1.44387 0.86588 0.79539 0.83307 0.78480 1.20531 1.21092 1.19734 1.89177 1.23111 1.73735 1.41530 0.92977 0.85967 0.96868 0.94591 0.90970 0.92161 0.91387 0.89783 0.91673 0.91877 0.91876 0.92235 0.92564 0.89825 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.15 60.06 0.55 0.66 16 2 N -0.50 -9.63 5.12 -230.84 -1.18 -10.81 16 3 C 0.03 0.52 6.70 -2.75 -0.02 0.50 16 4 C -0.13 -1.73 6.93 -25.38 -0.18 -1.90 16 5 C -0.11 -1.76 5.55 -24.87 -0.14 -1.90 16 6 C 0.07 1.28 2.03 -65.79 -0.13 1.15 16 7 H 0.06 1.09 7.96 -51.93 -0.41 0.68 16 8 C 0.26 5.50 0.89 -26.73 -0.02 5.48 16 9 C -0.16 -3.01 9.02 37.16 0.34 -2.68 16 10 O -0.38 -8.12 9.91 -59.04 -0.58 -8.71 16 11 C 0.02 0.45 7.33 38.16 0.28 0.73 16 12 C 0.19 4.95 3.03 -26.87 -0.08 4.86 16 13 H 0.04 1.22 7.48 -51.93 -0.39 0.83 16 14 C -0.54 -14.75 8.83 -34.44 -0.30 -15.05 16 15 H 0.06 1.71 7.78 -52.49 -0.41 1.30 16 16 C 0.08 2.23 5.42 -17.82 -0.10 2.13 16 17 N -0.86 -24.41 12.95 55.43 0.72 -23.69 16 18 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 O -0.35 -8.95 8.01 -59.04 -0.47 -9.42 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.12 3.01 4.80 -51.93 -0.25 2.76 16 25 H 0.01 0.25 8.00 -51.93 -0.42 -0.16 16 26 H 0.04 0.53 7.73 -51.93 -0.40 0.13 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.38 7.25 -51.93 -0.38 1.00 16 31 H 0.06 0.87 8.04 -51.93 -0.42 0.45 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.93 7.37 -51.93 -0.38 0.55 16 35 H 0.06 1.20 8.04 -51.93 -0.42 0.79 16 36 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 291.47 15.07 4.39 4.39 Total: -1.00 -28.98 291.47 -7.92 -36.90 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.96 Total: 1.47 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 0.19 Total: -6.01 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: -0.46 Total: -34.50 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -1.06 Total: -18.13 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.98 -7.92 -36.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258727376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.161 kcal (2) G-P(sol) polarization free energy of solvation -28.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds