Wall clock time and date at job start Mon Mar 30 2020 03:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47907 * 110.99845 * 2 1 4 4 C 1.53990 * 107.05675 * 145.84878 * 3 2 1 5 5 C 1.54597 * 105.14143 * 358.77466 * 4 3 2 6 6 C 1.48529 * 111.00554 * 117.39837 * 2 1 3 7 7 H 1.08999 * 110.66437 * 318.71748 * 6 2 1 8 8 C 1.52999 * 110.66795 * 81.84230 * 6 2 1 9 9 C 1.52997 * 109.62992 * 178.41957 * 8 6 2 10 10 O 1.43746 * 109.63122 * 58.17180 * 8 6 2 11 11 C 1.44782 * 104.81745 * 215.80835 * 10 8 6 12 12 C 1.54908 * 101.72049 * 36.10522 * 11 10 8 13 13 H 1.09003 * 110.69568 * 82.83846 * 12 11 10 14 14 C 1.50704 * 110.69661 * 206.03930 * 12 11 10 15 15 H 1.07999 * 119.99981 * 355.11473 * 14 12 11 16 16 C 1.37872 * 120.00314 * 175.10946 * 14 12 11 17 17 N 1.31516 * 120.00015 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00273 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47185 * 90.00180 * 18 16 14 20 20 H 1.48501 * 109.47106 * 210.00386 * 18 16 14 21 21 H 1.48500 * 109.46691 * 329.99750 * 18 16 14 22 22 O 1.43377 * 109.63238 * 298.81107 * 8 6 2 23 23 H 1.08995 * 109.47398 * 60.12313 * 1 2 3 24 24 H 1.09000 * 109.47063 * 180.12844 * 1 2 3 25 25 H 1.09000 * 109.46598 * 300.12057 * 1 2 3 26 26 H 1.08996 * 109.91720 * 26.48982 * 3 2 1 27 27 H 1.09004 * 110.07880 * 265.28981 * 3 2 1 28 28 H 1.09005 * 110.30685 * 239.86077 * 4 3 2 29 29 H 1.09003 * 110.39778 * 117.73322 * 4 3 2 30 30 H 1.09000 * 110.72471 * 96.39833 * 5 4 3 31 31 H 1.09001 * 110.72634 * 219.68854 * 5 4 3 32 32 H 1.09001 * 109.47331 * 59.99406 * 9 8 6 33 33 H 1.09004 * 109.47093 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.46991 * 299.99780 * 9 8 6 35 35 H 1.09004 * 110.98023 * 277.99263 * 11 10 8 36 36 H 1.09006 * 110.97607 * 154.21552 * 11 10 8 37 37 H 0.96993 * 120.00365 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3660 0.8264 5 6 3.4492 -0.0929 1.3152 6 6 2.0014 -0.6381 1.2311 7 1 1.4238 -0.3323 2.1034 8 6 2.0054 -2.1617 1.0912 9 6 2.5939 -2.7923 2.3548 10 8 2.7968 -2.5400 -0.0476 11 6 2.1158 -3.6891 -0.6064 12 6 0.6301 -3.3214 -0.3672 13 1 0.2644 -2.6632 -1.1553 14 6 -0.2175 -4.5639 -0.2732 15 1 0.2240 -5.5335 -0.4501 16 6 -1.5567 -4.4630 0.0387 17 7 -2.0946 -3.2822 0.2537 18 14 -2.6072 -6.0032 0.1559 19 1 -2.5767 -6.5184 1.5483 20 1 -4.0063 -5.6779 -0.2210 21 1 -2.0738 -7.0374 -0.7666 22 8 0.6644 -2.6312 0.8982 23 1 -0.3634 0.5119 -0.8910 24 1 -0.3633 -1.0277 0.0023 25 1 -0.3632 0.5157 0.8889 26 1 1.2758 2.0562 0.4571 27 1 2.2116 1.7001 -1.0203 28 1 3.2136 2.0429 1.6766 29 1 4.1479 1.6461 0.2037 30 1 4.1115 -0.6540 0.6560 31 1 3.8124 -0.1199 2.3426 32 1 1.9901 -2.5095 3.2171 33 1 2.5959 -3.8775 2.2522 34 1 3.6156 -2.4391 2.4952 35 1 2.3836 -4.6000 -0.0709 36 1 2.3268 -3.7879 -1.6713 37 1 -3.0368 -3.2111 0.4728 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258727376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:37 Heat of formation + Delta-G solvation = -102.650474 kcal Electronic energy + Delta-G solvation = -19122.778760 eV Core-core repulsion = 16285.387582 eV Total energy + Delta-G solvation = -2837.391179 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.35209 -39.14767 -35.69452 -34.60341 -33.35126 -32.48587 -29.87350 -28.74571 -26.65004 -26.37270 -23.35446 -23.01878 -21.61977 -20.86156 -18.76764 -17.76627 -17.31104 -16.79546 -16.49117 -15.80916 -15.67802 -15.08436 -14.82319 -14.37753 -14.23343 -13.89789 -13.59853 -13.44189 -13.31666 -13.08560 -12.87028 -12.76832 -12.53863 -12.38435 -12.26638 -12.15479 -12.04694 -11.80409 -11.40269 -11.12488 -10.75308 -10.53094 -9.93319 -9.22584 -8.15327 -6.36663 1.42533 1.43118 1.53617 2.40428 2.87931 3.06651 3.14599 3.51450 3.80890 3.90346 4.10998 4.21480 4.34629 4.38315 4.41189 4.50204 4.55998 4.56673 4.65592 4.69469 4.81603 4.87189 4.95575 4.98229 5.03639 5.20242 5.21190 5.25914 5.36285 5.44954 5.58201 5.73976 6.08924 6.15796 6.22273 6.62515 6.94602 7.38606 8.91643 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035143 B = 0.008132 C = 0.007342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.560638 B = 3442.166789 C = 3812.891837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.519 5.519 3 C 0.029 3.971 4 C -0.120 4.120 5 C -0.108 4.108 6 C 0.064 3.936 7 H 0.050 0.950 8 C 0.247 3.753 9 C -0.159 4.159 10 O -0.377 6.377 11 C 0.029 3.971 12 C 0.195 3.805 13 H 0.008 0.992 14 C -0.562 4.562 15 H 0.068 0.932 16 C 0.031 3.969 17 N -0.890 5.890 18 Si 0.961 3.039 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.263 1.263 22 O -0.379 6.379 23 H 0.058 0.942 24 H 0.080 0.920 25 H 0.015 0.985 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.281 6.587 2.596 11.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.243 5.243 3 C -0.099 4.099 4 C -0.157 4.157 5 C -0.146 4.146 6 C -0.045 4.045 7 H 0.068 0.932 8 C 0.169 3.831 9 C -0.217 4.217 10 O -0.298 6.298 11 C -0.048 4.048 12 C 0.140 3.860 13 H 0.026 0.974 14 C -0.599 4.599 15 H 0.086 0.914 16 C -0.173 4.173 17 N -0.527 5.527 18 Si 0.786 3.214 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.187 1.187 22 O -0.301 6.301 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.033 0.967 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.295 6.556 2.221 11.590 hybrid contribution -1.425 -0.403 0.628 1.609 sum 7.870 6.153 2.849 10.388 Atomic orbital electron populations 1.22625 0.87951 1.03917 0.98749 1.64542 1.07912 1.15257 1.36629 1.22984 0.96669 0.89082 1.01130 1.22369 0.97167 0.96289 0.99912 1.22450 0.93760 0.96043 1.02302 1.23088 0.97283 0.92685 0.91405 0.93217 1.23339 0.79972 0.92454 0.87364 1.22292 1.01813 1.01015 0.96612 1.89033 1.49212 1.46993 1.44572 1.24339 0.92206 0.88731 0.99476 1.20922 0.91693 0.90733 0.82681 0.97410 1.21396 0.94522 0.92797 1.51202 0.91398 1.25844 0.99117 0.99007 0.93288 1.70132 1.12734 1.24653 1.45162 0.85528 0.77730 0.79636 0.78507 1.20294 1.20715 1.18673 1.89111 1.25886 1.74125 1.40963 0.92320 0.90139 0.96650 0.93882 0.90299 0.89886 0.89462 0.90828 0.89104 0.91492 0.92967 0.89154 0.91914 0.88274 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.15 127.69 1.17 1.85 16 2 N -0.52 -19.82 5.12 -884.26 -4.53 -24.35 16 3 C 0.03 0.84 6.70 86.44 0.58 1.42 16 4 C -0.12 -2.77 6.93 31.47 0.22 -2.56 16 5 C -0.11 -2.97 5.55 31.80 0.18 -2.79 16 6 C 0.06 2.35 2.03 45.26 0.09 2.44 16 7 H 0.05 1.88 7.96 -2.39 -0.02 1.86 16 8 C 0.25 10.29 0.89 30.59 0.03 10.32 16 9 C -0.16 -5.61 9.02 71.98 0.65 -4.96 16 10 O -0.38 -15.98 9.91 -126.22 -1.25 -17.23 16 11 C 0.03 1.27 7.33 72.63 0.53 1.80 16 12 C 0.20 10.26 3.03 30.50 0.09 10.35 16 13 H 0.01 0.48 7.48 -2.39 -0.02 0.46 16 14 C -0.56 -31.26 8.83 25.60 0.23 -31.03 16 15 H 0.07 3.62 7.78 -2.91 -0.02 3.59 16 16 C 0.03 1.71 5.42 84.65 0.46 2.17 16 17 N -0.89 -52.06 12.95 21.45 0.28 -51.78 16 18 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 22 O -0.38 -19.65 8.01 -126.22 -1.01 -20.66 16 23 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.08 4.15 4.80 -2.39 -0.01 4.14 16 25 H 0.01 0.61 8.00 -2.39 -0.02 0.59 16 26 H 0.04 1.18 7.73 -2.39 -0.02 1.17 16 27 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 2.21 7.25 -2.39 -0.02 2.19 16 31 H 0.09 2.04 8.04 -2.39 -0.02 2.02 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.09 2.58 7.37 -2.38 -0.02 2.56 16 35 H 0.06 2.66 8.04 -2.38 -0.02 2.64 16 36 H 0.10 3.97 8.14 -2.38 -0.02 3.95 16 37 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -63.56 291.47 0.76 -62.80 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 1.03 Total: 16.87 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 4.22 Total: -10.98 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -4.25 Total: -76.13 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -2.26 Total: -37.89 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -63.56 0.76 -62.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258727376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.853 kcal (2) G-P(sol) polarization free energy of solvation -63.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds