Wall clock time and date at job start Mon Mar 30 2020 03:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47899 * 111.00068 * 2 1 4 4 C 1.53997 * 107.05889 * 145.84368 * 3 2 1 5 5 C 1.54593 * 105.13807 * 358.77516 * 4 3 2 6 6 C 1.48538 * 111.00123 * 117.39842 * 2 1 3 7 7 H 1.09007 * 110.66246 * 318.71191 * 6 2 1 8 8 C 1.52993 * 110.66548 * 81.67514 * 6 2 1 9 9 C 1.53006 * 109.62404 * 182.84737 * 8 6 2 10 10 O 1.43368 * 109.63252 * 62.45663 * 8 6 2 11 11 C 1.43901 * 107.44459 * 239.40171 * 10 8 6 12 12 C 1.54919 * 103.06700 * 338.67798 * 11 10 8 13 13 H 1.09001 * 110.98073 * 277.36529 * 12 11 10 14 14 C 1.50708 * 111.00548 * 153.60239 * 12 11 10 15 15 H 1.07996 * 120.00290 * 6.19566 * 14 12 11 16 16 C 1.37871 * 119.99680 * 186.18993 * 14 12 11 17 17 N 1.31519 * 120.00336 * 179.97438 * 16 14 12 18 18 Si 1.86805 * 120.00300 * 0.02562 * 16 14 12 19 19 H 1.48502 * 109.47032 * 89.99784 * 18 16 14 20 20 H 1.48501 * 109.47077 * 209.99856 * 18 16 14 21 21 H 1.48498 * 109.46980 * 329.99624 * 18 16 14 22 22 O 1.43749 * 109.63449 * 303.23431 * 8 6 2 23 23 H 1.08997 * 109.46923 * 60.12347 * 1 2 3 24 24 H 1.09003 * 109.47222 * 180.12818 * 1 2 3 25 25 H 1.09007 * 109.47006 * 300.12405 * 1 2 3 26 26 H 1.09004 * 109.91646 * 26.49394 * 3 2 1 27 27 H 1.09001 * 110.08341 * 265.29071 * 3 2 1 28 28 H 1.09004 * 110.30998 * 117.69119 * 4 3 2 29 29 H 1.08998 * 110.30811 * 239.85930 * 4 3 2 30 30 H 1.09007 * 110.72450 * 96.40308 * 5 4 3 31 31 H 1.09004 * 110.72461 * 219.68231 * 5 4 3 32 32 H 1.09001 * 109.47339 * 59.99986 * 9 8 6 33 33 H 1.09006 * 109.46977 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.47412 * 300.00026 * 9 8 6 35 35 H 1.09004 * 110.76735 * 220.25447 * 11 10 8 36 36 H 1.08995 * 110.77910 * 97.11131 * 11 10 8 37 37 H 0.96991 * 120.00626 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3807 0.0000 4 6 3.2983 1.3659 0.8266 5 6 3.4491 -0.0929 1.3154 6 6 2.0013 -0.6381 1.2312 7 1 1.4237 -0.3323 2.1035 8 6 2.0013 -2.1618 1.0928 9 6 2.4865 -2.7962 2.3979 10 8 2.8681 -2.5479 0.0181 11 6 2.0722 -3.2673 -0.9409 12 6 0.8555 -3.7366 -0.1046 13 1 1.0881 -4.6488 0.4449 14 6 -0.3576 -3.9305 -0.9776 15 1 -0.2710 -3.8404 -2.0503 16 6 -1.5780 -4.2231 -0.4067 17 7 -2.6368 -4.3919 -1.1684 18 14 -1.7281 -4.3785 1.4488 19 1 -2.0529 -3.0519 2.0319 20 1 -2.8084 -5.3424 1.7790 21 1 -0.4422 -4.8646 2.0104 22 8 0.6710 -2.6201 0.7985 23 1 -0.3633 0.5119 -0.8911 24 1 -0.3634 -1.0277 0.0023 25 1 -0.3633 0.5158 0.8889 26 1 1.2758 2.0561 0.4572 27 1 2.2116 1.7001 -1.0203 28 1 4.1470 1.6454 0.2024 29 1 3.2136 2.0429 1.6766 30 1 4.1115 -0.6541 0.6562 31 1 3.8123 -0.1199 2.3428 32 1 1.8218 -2.5067 3.2118 33 1 2.4860 -3.8816 2.2964 34 1 3.4979 -2.4525 2.6150 35 1 2.6214 -4.1223 -1.3353 36 1 1.7532 -2.6097 -1.7496 37 1 -3.4954 -4.5973 -0.7668 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258727420.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:38 Heat of formation + Delta-G solvation = -100.534181 kcal Electronic energy + Delta-G solvation = -19242.206612 eV Core-core repulsion = 16404.907202 eV Total energy + Delta-G solvation = -2837.299409 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.52348 -39.25347 -35.85681 -34.81221 -33.45095 -32.69403 -30.20530 -28.81033 -26.73899 -26.46359 -23.57438 -22.82404 -21.65471 -20.83163 -19.24755 -18.00566 -17.40339 -16.65506 -16.49000 -16.27430 -15.60678 -14.99852 -14.94733 -14.68539 -14.51000 -14.12707 -13.94196 -13.57183 -13.23279 -13.17862 -13.06113 -12.79759 -12.74118 -12.40602 -12.23732 -12.06689 -11.91248 -11.76979 -11.49866 -11.36282 -10.91295 -10.62937 -10.25273 -9.25619 -8.39616 -6.52877 1.32437 1.38541 1.47558 2.31361 2.66101 2.96826 3.05191 3.37225 3.75858 3.88065 4.06429 4.15443 4.20679 4.21554 4.33634 4.47077 4.51560 4.53839 4.56541 4.64521 4.75155 4.82324 4.87301 4.96333 5.00193 5.10827 5.16816 5.20547 5.23151 5.36409 5.43893 5.56963 6.06037 6.12620 6.17668 6.48258 6.60431 7.20995 8.74209 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029755 B = 0.009513 C = 0.008903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.800708 B = 2942.719184 C = 3144.159828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.522 5.522 3 C 0.030 3.970 4 C -0.120 4.120 5 C -0.106 4.106 6 C 0.061 3.939 7 H 0.057 0.943 8 C 0.251 3.749 9 C -0.166 4.166 10 O -0.379 6.379 11 C 0.053 3.947 12 C 0.148 3.852 13 H 0.041 0.959 14 C -0.520 4.520 15 H 0.050 0.950 16 C 0.038 3.962 17 N -0.931 5.931 18 Si 0.956 3.044 19 H -0.276 1.276 20 H -0.291 1.291 21 H -0.253 1.253 22 O -0.392 6.392 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.023 0.977 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.973 9.247 8.111 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.246 5.246 3 C -0.097 4.097 4 C -0.158 4.158 5 C -0.144 4.144 6 C -0.048 4.048 7 H 0.075 0.925 8 C 0.174 3.826 9 C -0.224 4.224 10 O -0.300 6.300 11 C -0.023 4.023 12 C 0.092 3.908 13 H 0.059 0.941 14 C -0.557 4.557 15 H 0.068 0.932 16 C -0.163 4.163 17 N -0.569 5.569 18 Si 0.782 3.218 19 H -0.202 1.202 20 H -0.218 1.218 21 H -0.177 1.177 22 O -0.314 6.314 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.972 9.071 7.690 16.874 hybrid contribution -1.256 0.063 0.884 1.537 sum 10.715 9.135 8.574 16.486 Atomic orbital electron populations 1.22557 0.88059 1.02931 0.99379 1.64500 1.07974 1.15444 1.36702 1.22963 0.96725 0.88954 1.01102 1.22373 0.97110 0.96406 0.99905 1.22418 0.93596 0.95869 1.02488 1.23149 0.97733 0.92261 0.91682 0.92466 1.23359 0.78022 0.92852 0.88398 1.22369 1.03131 1.01205 0.95676 1.88597 1.33833 1.74947 1.32626 1.23793 0.91149 0.95256 0.92117 1.21744 0.94935 0.86621 0.87477 0.94110 1.20919 0.93038 1.48469 0.93306 0.93170 1.25751 0.95122 0.92643 1.02803 1.70016 1.00769 1.48360 1.37797 0.85553 0.78070 0.77874 0.80349 1.20210 1.21766 1.17677 1.89254 1.25899 1.49554 1.66703 0.92090 0.91392 0.95837 0.93627 0.90537 0.89695 0.89775 0.90725 0.88901 0.90724 0.92616 0.88740 0.88369 0.92861 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 9.13 127.69 1.17 1.90 16 2 N -0.52 -18.25 5.18 -884.23 -4.58 -22.83 16 3 C 0.03 0.80 6.70 86.45 0.58 1.38 16 4 C -0.12 -2.50 6.93 31.47 0.22 -2.28 16 5 C -0.11 -2.59 5.75 31.80 0.18 -2.41 16 6 C 0.06 1.96 2.01 45.26 0.09 2.05 16 7 H 0.06 1.83 7.97 -2.38 -0.02 1.81 16 8 C 0.25 9.33 0.90 30.59 0.03 9.35 16 9 C -0.17 -5.05 9.07 71.98 0.65 -4.39 16 10 O -0.38 -14.64 9.65 -126.21 -1.22 -15.86 16 11 C 0.05 2.24 7.51 72.64 0.55 2.79 16 12 C 0.15 7.07 2.64 30.51 0.08 7.15 16 13 H 0.04 1.95 7.41 -2.39 -0.02 1.93 16 14 C -0.52 -29.66 9.43 25.60 0.24 -29.42 16 15 H 0.05 3.12 8.03 -2.91 -0.02 3.10 16 16 C 0.04 2.19 5.47 84.65 0.46 2.65 16 17 N -0.93 -57.27 13.96 21.45 0.30 -56.97 16 18 Si 0.96 46.62 26.35 68.60 1.81 48.43 16 19 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.25 -11.64 6.62 99.48 0.66 -10.98 16 22 O -0.39 -17.93 5.95 -126.21 -0.75 -18.68 16 23 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.07 3.20 5.71 -2.39 -0.01 3.19 16 25 H 0.02 0.81 8.00 -2.38 -0.02 0.79 16 26 H 0.05 1.13 7.73 -2.39 -0.02 1.11 16 27 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 2.05 7.11 -2.38 -0.02 2.03 16 31 H 0.09 1.79 8.09 -2.38 -0.02 1.77 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.05 1.77 8.14 -2.38 -0.02 1.76 16 34 H 0.09 2.30 7.56 -2.39 -0.02 2.28 16 35 H 0.10 3.66 8.14 -2.38 -0.02 3.64 16 36 H 0.05 2.43 8.03 -2.39 -0.02 2.41 16 37 H 0.27 15.54 8.31 -92.72 -0.77 14.77 16 Total: -1.00 -65.01 288.41 0.79 -64.23 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.98 Total: 12.92 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 4.25 Total: -11.23 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -4.28 Total: -79.80 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.97 Total: -34.55 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.81 Total: 48.43 kcal Total: -65.01 0.79 -64.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258727420.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.306 kcal (2) G-P(sol) polarization free energy of solvation -65.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds