Wall clock time and date at job start Mon Mar 30 2020 03:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47443 * 110.99755 * 2 1 4 4 C 1.54313 * 107.23273 * 123.25901 * 3 2 1 5 5 C 1.55147 * 103.02085 * 22.27903 * 4 3 2 6 6 C 1.47847 * 110.99697 * 120.84084 * 2 1 3 7 7 H 1.08994 * 110.37473 * 332.57915 * 6 2 1 8 8 C 1.53003 * 110.37122 * 94.81115 * 6 2 1 9 9 C 1.53000 * 109.51069 * 53.85904 * 8 6 2 10 10 O 1.43373 * 109.62951 * 174.18139 * 8 6 2 11 11 C 1.44196 * 107.28834 * 120.54703 * 10 8 6 12 12 C 1.54909 * 103.07727 * 21.43462 * 11 10 8 13 13 H 1.08999 * 110.98055 * 82.54581 * 12 11 10 14 14 C 1.50707 * 110.97616 * 206.33218 * 12 11 10 15 15 H 1.07994 * 119.99918 * 353.78694 * 14 12 11 16 16 C 1.37876 * 119.99646 * 173.78760 * 14 12 11 17 17 N 1.31512 * 119.99486 * 179.97438 * 16 14 12 18 18 Si 1.86793 * 120.00390 * 0.02562 * 16 14 12 19 19 H 1.48504 * 109.47132 * 89.99837 * 18 16 14 20 20 H 1.48500 * 109.47202 * 209.99850 * 18 16 14 21 21 H 1.48498 * 109.47334 * 330.00042 * 18 16 14 22 22 O 1.43758 * 109.62960 * 293.53942 * 8 6 2 23 23 H 1.09001 * 109.47228 * 299.15451 * 1 2 3 24 24 H 1.08997 * 109.47232 * 59.15852 * 1 2 3 25 25 H 1.09006 * 109.47079 * 179.15858 * 1 2 3 26 26 H 1.09001 * 109.88453 * 242.65781 * 3 2 1 27 27 H 1.09000 * 109.89277 * 3.85233 * 3 2 1 28 28 H 1.09001 * 110.71165 * 140.66005 * 4 3 2 29 29 H 1.09005 * 110.70692 * 263.72714 * 4 3 2 30 30 H 1.08998 * 110.98854 * 206.25610 * 5 4 3 31 31 H 1.08995 * 110.98740 * 82.44006 * 5 4 3 32 32 H 1.08996 * 109.47278 * 300.38565 * 9 8 6 33 33 H 1.08998 * 109.46697 * 60.38155 * 9 8 6 34 34 H 1.08993 * 109.47287 * 180.37955 * 9 8 6 35 35 H 1.08996 * 110.68821 * 263.03745 * 11 10 8 36 36 H 1.08997 * 110.69106 * 139.83403 * 11 10 8 37 37 H 0.97001 * 120.00282 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5137 1.2324 5 6 3.3047 0.0444 1.5438 6 6 1.9988 -0.7076 1.1851 7 1 1.2881 -0.6518 2.0095 8 6 2.3020 -2.1676 0.8423 9 6 3.2242 -2.2253 -0.3772 10 8 2.9394 -2.8022 1.9588 11 6 2.1059 -3.9099 2.3554 12 6 1.2717 -4.1946 1.0815 13 1 1.8303 -4.8137 0.3795 14 6 -0.0467 -4.8350 1.4319 15 1 -0.2522 -5.1246 2.4518 16 6 -0.9904 -5.0513 0.4502 17 7 -2.1408 -5.6107 0.7559 18 14 -0.6347 -4.5512 -1.3140 19 1 0.0074 -5.6831 -2.0295 20 1 -1.9059 -4.1935 -1.9931 21 1 0.2775 -3.3794 -1.3220 22 8 1.0759 -2.8606 0.5539 23 1 -0.3634 0.5006 0.8975 24 1 -0.3633 0.5268 -0.8823 25 1 -0.3633 -1.0276 -0.0151 26 1 2.5698 1.5539 -0.9105 27 1 1.1755 2.0892 0.0689 28 1 3.8001 2.1033 0.9905 29 1 2.3752 1.9575 2.0685 30 1 3.5494 -0.0795 2.5987 31 1 4.1302 -0.2833 0.9120 32 1 2.7376 -1.7412 -1.2239 33 1 4.1577 -1.7099 -0.1514 34 1 3.4343 -3.2657 -0.6249 35 1 1.4579 -3.6267 3.1848 36 1 2.7145 -4.7750 2.6186 37 1 -2.8046 -5.7632 0.0654 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258727455.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:40 Heat of formation + Delta-G solvation = -77.382230 kcal Electronic energy + Delta-G solvation = -19078.852501 eV Core-core repulsion = 16242.557036 eV Total energy + Delta-G solvation = -2836.295466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.98024 -38.17468 -34.13220 -32.75993 -31.88751 -31.29129 -28.44686 -27.54971 -25.28704 -24.85900 -22.37902 -21.18465 -20.60575 -19.09772 -17.13474 -16.33329 -15.94735 -15.49038 -15.14774 -14.37892 -13.98485 -13.77394 -13.38842 -13.09038 -13.03189 -12.59963 -12.50790 -12.16794 -11.81132 -11.50955 -11.48200 -11.20985 -11.09408 -11.06281 -10.88349 -10.76395 -10.48712 -10.11155 -9.78112 -9.54521 -9.06789 -8.64834 -8.54504 -7.98765 -6.19318 -4.30371 3.35159 3.41968 3.68619 3.97571 4.47158 4.49570 4.74683 4.84653 4.98918 5.06548 5.30398 5.45023 5.57657 5.60443 5.68739 5.82176 5.84054 5.86926 5.87525 5.96678 6.06121 6.06319 6.18074 6.21563 6.27046 6.42679 6.43082 6.57444 6.61904 6.81453 7.09048 7.24462 7.35784 7.53187 8.21023 8.31127 8.78653 9.42540 10.90405 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028878 B = 0.009501 C = 0.008266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.356225 B = 2946.423135 C = 3386.412387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.520 5.520 3 C 0.042 3.958 4 C -0.143 4.143 5 C -0.118 4.118 6 C 0.075 3.925 7 H 0.061 0.939 8 C 0.261 3.739 9 C -0.156 4.156 10 O -0.398 6.398 11 C 0.035 3.965 12 C 0.146 3.854 13 H 0.038 0.962 14 C -0.526 4.526 15 H 0.082 0.918 16 C 0.088 3.912 17 N -0.887 5.887 18 Si 0.862 3.138 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.215 1.215 22 O -0.363 6.363 23 H 0.021 0.979 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.381 11.928 -1.013 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.245 5.245 3 C -0.086 4.086 4 C -0.181 4.181 5 C -0.156 4.156 6 C -0.033 4.033 7 H 0.079 0.921 8 C 0.182 3.818 9 C -0.213 4.213 10 O -0.319 6.319 11 C -0.041 4.041 12 C 0.090 3.910 13 H 0.056 0.944 14 C -0.562 4.562 15 H 0.100 0.900 16 C -0.117 4.117 17 N -0.524 5.524 18 Si 0.688 3.312 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.138 1.138 22 O -0.284 6.284 23 H 0.039 0.961 24 H 0.079 0.921 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.361 11.763 -1.544 15.112 hybrid contribution -0.436 0.405 -0.119 0.607 sum 8.925 12.168 -1.663 15.182 Atomic orbital electron populations 1.22593 0.86933 1.03929 0.99271 1.63253 1.08552 1.12698 1.39979 1.22835 0.97723 0.89898 0.98159 1.22799 0.99747 0.97444 0.98125 1.22702 0.97390 0.93488 1.01978 1.22772 0.95915 0.93245 0.91412 0.92131 1.22918 0.84012 0.89527 0.85310 1.22230 0.99033 1.01558 0.98517 1.88702 1.47715 1.45786 1.49680 1.24135 0.92736 0.87983 0.99243 1.21858 0.97457 0.82055 0.89582 0.94423 1.20750 0.98638 1.39360 0.97486 0.89987 1.24997 0.94299 0.92619 0.99821 1.69908 1.06504 1.41492 1.34464 0.87089 0.79198 0.81415 0.83479 1.20993 1.21625 1.13785 1.89636 1.33248 1.25859 1.79689 0.96060 0.92116 0.89315 0.90791 0.93029 0.90974 0.91771 0.90666 0.90175 0.90095 0.92416 0.93078 0.91445 0.89968 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.04 60.07 0.54 0.89 16 2 N -0.52 -8.47 4.12 -231.60 -0.95 -9.43 16 3 C 0.04 0.53 6.90 -2.84 -0.02 0.51 16 4 C -0.14 -1.65 6.94 -24.91 -0.17 -1.83 16 5 C -0.12 -1.64 6.07 -24.59 -0.15 -1.79 16 6 C 0.08 1.31 2.23 -66.19 -0.15 1.16 16 7 H 0.06 1.14 7.77 -51.93 -0.40 0.74 16 8 C 0.26 5.15 0.95 -26.73 -0.03 5.13 16 9 C -0.16 -2.78 8.74 37.16 0.32 -2.46 16 10 O -0.40 -7.98 10.52 -59.04 -0.62 -8.60 16 11 C 0.04 0.73 7.51 38.16 0.29 1.02 16 12 C 0.15 3.50 2.66 -26.87 -0.07 3.43 16 13 H 0.04 0.91 7.74 -51.93 -0.40 0.51 16 14 C -0.53 -14.69 9.43 -34.44 -0.32 -15.02 16 15 H 0.08 2.43 8.03 -52.49 -0.42 2.01 16 16 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 17 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 18 Si 0.86 21.56 27.15 -169.99 -4.61 16.95 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.22 -5.26 5.37 56.52 0.30 -4.96 16 22 O -0.36 -8.49 6.40 -59.04 -0.38 -8.87 16 23 H 0.02 0.33 8.09 -51.93 -0.42 -0.09 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.09 1.77 6.85 -51.93 -0.36 1.41 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.61 7.58 -51.93 -0.39 0.21 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.11 5.98 -51.93 -0.31 0.80 16 32 H 0.08 1.47 7.48 -51.93 -0.39 1.08 16 33 H 0.06 0.90 6.22 -51.93 -0.32 0.58 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 36 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 286.75 15.07 4.32 4.32 Total: -1.00 -30.09 286.75 -7.35 -37.45 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.03 Total: 0.75 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 0.15 Total: -6.52 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.18 Total: -35.47 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -1.00 Total: -17.47 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.61 Total: 16.95 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.09 -7.35 -37.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258727455.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.935 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds