Wall clock time and date at job start Mon Mar 30 2020 03:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47443 * 110.99755 * 2 1 4 4 C 1.54313 * 107.23273 * 123.25901 * 3 2 1 5 5 C 1.55147 * 103.02085 * 22.27903 * 4 3 2 6 6 C 1.47847 * 110.99697 * 120.84084 * 2 1 3 7 7 H 1.08994 * 110.37473 * 332.57915 * 6 2 1 8 8 C 1.53003 * 110.37122 * 94.81115 * 6 2 1 9 9 C 1.53000 * 109.51069 * 53.85904 * 8 6 2 10 10 O 1.43373 * 109.62951 * 174.18139 * 8 6 2 11 11 C 1.44196 * 107.28834 * 120.54703 * 10 8 6 12 12 C 1.54909 * 103.07727 * 21.43462 * 11 10 8 13 13 H 1.08999 * 110.98055 * 82.54581 * 12 11 10 14 14 C 1.50707 * 110.97616 * 206.33218 * 12 11 10 15 15 H 1.07994 * 119.99918 * 353.78694 * 14 12 11 16 16 C 1.37876 * 119.99646 * 173.78760 * 14 12 11 17 17 N 1.31512 * 119.99486 * 179.97438 * 16 14 12 18 18 Si 1.86793 * 120.00390 * 0.02562 * 16 14 12 19 19 H 1.48504 * 109.47132 * 89.99837 * 18 16 14 20 20 H 1.48500 * 109.47202 * 209.99850 * 18 16 14 21 21 H 1.48498 * 109.47334 * 330.00042 * 18 16 14 22 22 O 1.43758 * 109.62960 * 293.53942 * 8 6 2 23 23 H 1.09001 * 109.47228 * 299.15451 * 1 2 3 24 24 H 1.08997 * 109.47232 * 59.15852 * 1 2 3 25 25 H 1.09006 * 109.47079 * 179.15858 * 1 2 3 26 26 H 1.09001 * 109.88453 * 242.65781 * 3 2 1 27 27 H 1.09000 * 109.89277 * 3.85233 * 3 2 1 28 28 H 1.09001 * 110.71165 * 140.66005 * 4 3 2 29 29 H 1.09005 * 110.70692 * 263.72714 * 4 3 2 30 30 H 1.08998 * 110.98854 * 206.25610 * 5 4 3 31 31 H 1.08995 * 110.98740 * 82.44006 * 5 4 3 32 32 H 1.08996 * 109.47278 * 300.38565 * 9 8 6 33 33 H 1.08998 * 109.46697 * 60.38155 * 9 8 6 34 34 H 1.08993 * 109.47287 * 180.37955 * 9 8 6 35 35 H 1.08996 * 110.68821 * 263.03745 * 11 10 8 36 36 H 1.08997 * 110.69106 * 139.83403 * 11 10 8 37 37 H 0.97001 * 120.00282 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5137 1.2324 5 6 3.3047 0.0444 1.5438 6 6 1.9988 -0.7076 1.1851 7 1 1.2881 -0.6518 2.0095 8 6 2.3020 -2.1676 0.8423 9 6 3.2242 -2.2253 -0.3772 10 8 2.9394 -2.8022 1.9588 11 6 2.1059 -3.9099 2.3554 12 6 1.2717 -4.1946 1.0815 13 1 1.8303 -4.8137 0.3795 14 6 -0.0467 -4.8350 1.4319 15 1 -0.2522 -5.1246 2.4518 16 6 -0.9904 -5.0513 0.4502 17 7 -2.1408 -5.6107 0.7559 18 14 -0.6347 -4.5512 -1.3140 19 1 0.0074 -5.6831 -2.0295 20 1 -1.9059 -4.1935 -1.9931 21 1 0.2775 -3.3794 -1.3220 22 8 1.0759 -2.8606 0.5539 23 1 -0.3634 0.5006 0.8975 24 1 -0.3633 0.5268 -0.8823 25 1 -0.3633 -1.0276 -0.0151 26 1 2.5698 1.5539 -0.9105 27 1 1.1755 2.0892 0.0689 28 1 3.8001 2.1033 0.9905 29 1 2.3752 1.9575 2.0685 30 1 3.5494 -0.0795 2.5987 31 1 4.1302 -0.2833 0.9120 32 1 2.7376 -1.7412 -1.2239 33 1 4.1577 -1.7099 -0.1514 34 1 3.4343 -3.2657 -0.6249 35 1 1.4579 -3.6267 3.1848 36 1 2.7145 -4.7750 2.6186 37 1 -2.8046 -5.7632 0.0654 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258727455.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:40 Heat of formation + Delta-G solvation = -97.854222 kcal Electronic energy + Delta-G solvation = -19079.740233 eV Core-core repulsion = 16242.557036 eV Total energy + Delta-G solvation = -2837.183198 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.52104 -39.49736 -35.90374 -34.78514 -33.24419 -32.70254 -30.20388 -28.83465 -26.80398 -26.51335 -23.74237 -22.91954 -21.79921 -20.52436 -19.22292 -17.83518 -17.59268 -16.86104 -16.59328 -16.22662 -15.42766 -15.22714 -14.81184 -14.73935 -14.62122 -14.28841 -13.98610 -13.55614 -13.28719 -13.07435 -12.90093 -12.80149 -12.66679 -12.37299 -12.22982 -12.01534 -11.99369 -11.74254 -11.60075 -11.35965 -10.82779 -10.74992 -10.25371 -9.25380 -8.41578 -6.56499 1.34506 1.37808 1.68289 2.38337 2.54296 2.85443 3.21162 3.44631 3.69727 3.87851 4.02338 4.07063 4.15413 4.20259 4.29401 4.46806 4.48772 4.52324 4.59076 4.69265 4.76479 4.80933 4.89213 4.98330 5.02843 5.08071 5.11529 5.13178 5.27676 5.31049 5.43954 5.52036 5.98826 6.08259 6.16417 6.46251 6.59684 7.19982 8.71667 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028878 B = 0.009501 C = 0.008266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.356225 B = 2946.423135 C = 3386.412387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.531 5.531 3 C 0.039 3.961 4 C -0.132 4.132 5 C -0.113 4.113 6 C 0.073 3.927 7 H 0.036 0.964 8 C 0.248 3.752 9 C -0.149 4.149 10 O -0.393 6.393 11 C 0.042 3.958 12 C 0.145 3.855 13 H 0.042 0.958 14 C -0.532 4.532 15 H 0.050 0.950 16 C 0.036 3.964 17 N -0.932 5.932 18 Si 0.927 3.073 19 H -0.276 1.276 20 H -0.291 1.291 21 H -0.208 1.208 22 O -0.381 6.381 23 H 0.025 0.975 24 H 0.081 0.919 25 H 0.048 0.952 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.529 14.026 -2.106 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.256 5.256 3 C -0.088 4.088 4 C -0.170 4.170 5 C -0.151 4.151 6 C -0.036 4.036 7 H 0.054 0.946 8 C 0.170 3.830 9 C -0.207 4.207 10 O -0.314 6.314 11 C -0.034 4.034 12 C 0.089 3.911 13 H 0.060 0.940 14 C -0.569 4.569 15 H 0.068 0.932 16 C -0.165 4.165 17 N -0.570 5.570 18 Si 0.750 3.250 19 H -0.201 1.201 20 H -0.217 1.217 21 H -0.130 1.130 22 O -0.303 6.303 23 H 0.044 0.956 24 H 0.099 0.901 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.529 13.876 -2.629 18.231 hybrid contribution -1.096 -0.219 0.297 1.156 sum 10.434 13.657 -2.333 17.344 Atomic orbital electron populations 1.22486 0.87629 1.01677 1.00494 1.63226 1.08078 1.15030 1.39308 1.22959 0.98448 0.87932 0.99449 1.22778 1.00594 0.96016 0.97646 1.22696 0.95533 0.94653 1.02193 1.22736 0.97362 0.92375 0.91126 0.94625 1.23374 0.83155 0.90467 0.85998 1.22177 0.99607 1.01584 0.97293 1.88691 1.47312 1.45461 1.49967 1.24019 0.92785 0.89110 0.97466 1.21672 0.95669 0.82443 0.91276 0.94036 1.20964 1.00432 1.39461 0.96087 0.93207 1.25813 0.94054 0.92655 1.03932 1.70021 1.07712 1.43436 1.35851 0.86103 0.78978 0.81361 0.78568 1.20134 1.21735 1.13011 1.89566 1.35495 1.25372 1.79873 0.95618 0.90076 0.93285 0.89322 0.91887 0.88167 0.91335 0.90497 0.89561 0.90280 0.89831 0.93653 0.92448 0.87492 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 9.04 127.69 1.15 1.98 16 2 N -0.53 -16.16 4.12 -886.64 -3.65 -19.81 16 3 C 0.04 0.86 6.90 86.64 0.60 1.45 16 4 C -0.13 -2.53 6.94 31.78 0.22 -2.31 16 5 C -0.11 -2.80 6.07 31.98 0.19 -2.61 16 6 C 0.07 2.42 2.23 45.38 0.10 2.52 16 7 H 0.04 1.34 7.77 -2.39 -0.02 1.32 16 8 C 0.25 9.44 0.95 30.60 0.03 9.47 16 9 C -0.15 -4.94 8.74 71.98 0.63 -4.31 16 10 O -0.39 -15.17 10.52 -126.22 -1.33 -16.50 16 11 C 0.04 1.75 7.51 72.63 0.55 2.30 16 12 C 0.15 6.96 2.66 30.50 0.08 7.04 16 13 H 0.04 1.97 7.74 -2.39 -0.02 1.96 16 14 C -0.53 -30.58 9.43 25.60 0.24 -30.34 16 15 H 0.05 3.09 8.03 -2.91 -0.02 3.07 16 16 C 0.04 2.13 5.47 84.65 0.46 2.60 16 17 N -0.93 -57.97 13.96 21.45 0.30 -57.68 16 18 Si 0.93 45.28 27.15 68.60 1.86 47.14 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.21 -9.83 5.37 99.48 0.53 -9.30 16 22 O -0.38 -17.73 6.40 -126.22 -0.81 -18.53 16 23 H 0.03 0.77 8.09 -2.39 -0.02 0.76 16 24 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.05 1.96 6.85 -2.38 -0.02 1.95 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 1.25 7.58 -2.39 -0.02 1.23 16 28 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 2.04 5.98 -2.39 -0.01 2.03 16 32 H 0.08 2.66 7.48 -2.39 -0.02 2.64 16 33 H 0.08 2.31 6.22 -2.39 -0.01 2.29 16 34 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 2.46 8.03 -2.39 -0.02 2.44 16 36 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 37 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -65.72 286.75 1.49 -64.23 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.86 Total: 13.37 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 4.26 Total: -12.22 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -3.35 Total: -77.48 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -2.14 Total: -35.03 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.86 Total: 47.14 kcal Total: -65.72 1.49 -64.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258727455.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.623 kcal (2) G-P(sol) polarization free energy of solvation -65.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds