Wall clock time and date at job start Mon Mar 30 2020 03:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00095 * 2 1 4 4 H 1.48499 * 109.47292 * 239.99879 * 3 2 1 5 5 H 1.48506 * 109.47244 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47194 * 119.99755 * 3 2 1 7 7 C 1.37880 * 119.99398 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99280 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00663 * 0.02562 * 7 2 1 10 10 H 1.08992 * 110.75386 * 298.28369 * 9 7 2 11 11 C 1.54912 * 110.69636 * 175.10824 * 9 7 2 12 12 O 1.44787 * 101.72028 * 206.04153 * 11 9 7 13 13 C 1.43751 * 104.81699 * 36.10566 * 12 11 9 14 14 H 1.09006 * 109.51267 * 95.49013 * 13 12 11 15 15 C 1.52998 * 109.63464 * 215.80650 * 13 12 11 16 16 C 1.52996 * 109.47089 * 294.36670 * 15 13 12 17 17 C 1.53118 * 109.52328 * 174.99886 * 16 15 13 18 18 C 1.53034 * 109.28068 * 177.55504 * 17 16 15 19 19 N 1.46848 * 109.52504 * 300.82023 * 18 17 16 20 20 C 1.46847 * 111.19556 * 61.74015 * 19 18 17 21 21 C 1.53044 * 109.52516 * 298.25761 * 20 19 18 22 22 O 1.43377 * 108.79057 * 335.68377 * 13 12 11 23 23 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.97998 * 324.14771 * 11 9 7 25 25 H 1.08998 * 110.97700 * 87.90068 * 11 9 7 26 26 H 1.08997 * 109.47326 * 174.35676 * 15 13 12 27 27 H 1.09006 * 109.47071 * 54.36197 * 15 13 12 28 28 H 1.08992 * 109.57558 * 54.83791 * 16 15 13 29 29 H 1.09001 * 109.50624 * 57.61525 * 17 16 15 30 30 H 1.08998 * 109.50047 * 297.49982 * 17 16 15 31 31 H 1.09000 * 109.46341 * 180.80474 * 18 17 16 32 32 H 1.08999 * 109.46274 * 60.83372 * 18 17 16 33 33 H 1.00901 * 111.00066 * 185.83397 * 19 18 17 34 34 H 1.08999 * 109.46628 * 58.27319 * 20 19 18 35 35 H 1.09003 * 109.46158 * 178.24166 * 20 19 18 36 36 H 1.08996 * 109.50067 * 299.23984 * 21 20 19 37 37 H 1.08999 * 109.53710 * 179.14269 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6393 -2.5921 0.8978 11 6 2.2277 -3.6953 -0.1224 12 8 1.3832 -4.7037 -0.7277 13 6 0.5337 -3.9774 -1.6317 14 1 0.9614 -4.0040 -2.6340 15 6 -0.8587 -4.6113 -1.6500 16 6 -0.7706 -6.0183 -2.2444 17 6 -2.1381 -6.7006 -2.1492 18 6 -2.0593 -8.0834 -2.7998 19 7 -1.6597 -7.9423 -4.2058 20 6 -0.3287 -7.3326 -4.3208 21 6 -0.3558 -5.9272 -3.7156 22 8 0.4383 -2.6184 -1.1846 23 1 -0.4850 0.8401 -0.0004 24 1 3.0674 -3.4483 -0.7720 25 1 2.5773 -4.0161 0.8589 26 1 -1.5276 -4.0015 -2.2572 27 1 -1.2444 -4.6704 -0.6322 28 1 -0.0332 -6.6020 -1.6935 29 1 -2.8830 -6.0966 -2.6673 30 1 -2.4196 -6.8067 -1.1015 31 1 -3.0351 -8.5661 -2.7464 32 1 -1.3242 -8.6915 -2.2727 33 1 -1.6925 -8.8312 -4.6821 34 1 0.3984 -7.9441 -3.7864 35 1 -0.0475 -7.2699 -5.3721 36 1 -1.0727 -5.3111 -4.2583 37 1 0.6358 -5.4803 -3.7871 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258756099.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:24 Heat of formation + Delta-G solvation = -107.903725 kcal Electronic energy + Delta-G solvation = -17988.953765 eV Core-core repulsion = 15151.334788 eV Total energy + Delta-G solvation = -2837.618977 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.37702 -38.32107 -33.97571 -33.64657 -32.44667 -30.77444 -29.53416 -27.33935 -24.70834 -23.37078 -22.68175 -21.16271 -20.62217 -19.42250 -16.88668 -16.66866 -15.74092 -15.34773 -15.03524 -14.60138 -14.43246 -14.06308 -13.73752 -13.44040 -12.87467 -12.70566 -12.31694 -12.13173 -11.95137 -11.63767 -11.32333 -11.21261 -11.12488 -10.91571 -10.57836 -10.37055 -10.32983 -10.18173 -10.04891 -9.32895 -9.01703 -8.64031 -8.52370 -8.06098 -6.09872 -4.25702 3.28104 3.33006 3.34880 4.17050 4.34516 4.58347 4.81303 4.92513 4.98699 5.15215 5.27054 5.39281 5.47314 5.56684 5.63892 5.74557 5.84223 5.86574 5.95220 6.05229 6.12397 6.17555 6.20823 6.28898 6.33538 6.39996 6.51011 6.64528 6.78766 6.89200 6.97652 7.30075 7.43670 7.77974 8.11649 8.47598 8.86162 9.46332 10.97702 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049716 B = 0.005045 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.064620 B = 5549.155555 C = 5648.886480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.080 3.920 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.189 3.811 10 H 0.040 0.960 11 C 0.020 3.980 12 O -0.402 6.402 13 C 0.224 3.776 14 H 0.059 0.941 15 C -0.121 4.121 16 C -0.083 4.083 17 C -0.112 4.112 18 C 0.059 3.941 19 N -0.691 5.691 20 C 0.059 3.941 21 C -0.115 4.115 22 O -0.364 6.364 23 H 0.264 0.736 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.337 0.663 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 -13.307 -5.374 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.127 4.127 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.084 0.916 9 C 0.134 3.866 10 H 0.057 0.943 11 C -0.056 4.056 12 O -0.323 6.323 13 C 0.128 3.872 14 H 0.076 0.924 15 C -0.158 4.158 16 C -0.102 4.102 17 C -0.150 4.150 18 C -0.070 4.070 19 N -0.322 5.322 20 C -0.071 4.071 21 C -0.153 4.153 22 O -0.285 6.285 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.155 0.845 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.513 -12.660 -5.507 14.033 hybrid contribution 1.115 0.168 0.271 1.159 sum -1.398 -12.493 -5.236 13.618 Atomic orbital electron populations 1.70033 1.06121 1.27018 1.46348 1.25071 0.94817 0.99472 0.93340 0.86597 0.79652 0.82568 0.78802 1.19967 1.21040 1.19954 1.20952 0.92753 0.89750 1.54679 0.91557 1.21251 0.86938 0.93008 0.85449 0.94275 1.24518 0.95019 0.88570 0.97474 1.89011 1.51130 1.32516 1.59683 1.23859 0.89562 0.81462 0.92306 0.92363 1.21984 0.97111 0.94906 1.01845 1.21103 0.96891 0.96493 0.95702 1.21645 0.97865 0.95449 1.00056 1.21921 0.99655 0.97303 0.88170 1.60290 1.28410 1.29282 1.14239 1.21934 0.88846 0.95943 1.00328 1.21707 1.01955 0.95909 0.95697 1.89233 1.71137 1.22415 1.45762 0.92627 0.92061 0.89556 0.90593 0.91343 0.91001 0.91178 0.91637 0.91127 0.95402 0.84542 0.95352 0.91068 0.91154 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.50 12.95 55.43 0.72 -24.78 16 2 C 0.08 2.25 5.42 -17.82 -0.10 2.15 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.18 8.83 -34.44 -0.30 -15.49 16 8 H 0.07 1.76 7.78 -52.49 -0.41 1.35 16 9 C 0.19 4.96 3.51 -26.88 -0.09 4.87 16 10 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 11 C 0.02 0.44 7.37 38.17 0.28 0.73 16 12 O -0.40 -8.60 10.84 -59.04 -0.64 -9.24 16 13 C 0.22 4.81 3.89 37.16 0.14 4.95 16 14 H 0.06 1.20 6.41 -51.93 -0.33 0.87 16 15 C -0.12 -2.20 4.78 -26.73 -0.13 -2.33 16 16 C -0.08 -1.24 2.21 -90.50 -0.20 -1.44 16 17 C -0.11 -1.45 5.38 -26.65 -0.14 -1.59 16 18 C 0.06 0.65 6.55 -3.83 -0.03 0.63 16 19 N -0.69 -7.65 6.85 -113.81 -0.78 -8.42 16 20 C 0.06 0.68 6.55 -3.83 -0.03 0.66 16 21 C -0.11 -1.59 5.09 -26.65 -0.14 -1.72 16 22 O -0.36 -9.72 10.46 -59.04 -0.62 -10.34 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.06 1.30 8.04 -51.93 -0.42 0.88 16 25 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 26 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.15 7.73 -51.93 -0.40 0.75 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.34 2.97 8.90 -39.29 -0.35 2.62 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.99 6.59 -51.93 -0.34 0.65 16 LS Contribution 294.83 15.07 4.44 4.44 Total: -1.00 -30.49 294.83 -8.66 -39.15 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.04 Total: 1.70 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.73 Total: -8.59 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: -0.06 Total: -33.21 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -1.26 Total: -19.58 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.49 -8.66 -39.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258756099.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.757 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds