Wall clock time and date at job start Mon Mar 30 2020 03:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00095 * 2 1 4 4 H 1.48499 * 109.47292 * 239.99879 * 3 2 1 5 5 H 1.48506 * 109.47244 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47194 * 119.99755 * 3 2 1 7 7 C 1.37880 * 119.99398 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99280 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00663 * 0.02562 * 7 2 1 10 10 H 1.08992 * 110.75386 * 298.28369 * 9 7 2 11 11 C 1.54912 * 110.69636 * 175.10824 * 9 7 2 12 12 O 1.44787 * 101.72028 * 206.04153 * 11 9 7 13 13 C 1.43751 * 104.81699 * 36.10566 * 12 11 9 14 14 H 1.09006 * 109.51267 * 95.49013 * 13 12 11 15 15 C 1.52998 * 109.63464 * 215.80650 * 13 12 11 16 16 C 1.52996 * 109.47089 * 294.36670 * 15 13 12 17 17 C 1.53118 * 109.52328 * 174.99886 * 16 15 13 18 18 C 1.53034 * 109.28068 * 177.55504 * 17 16 15 19 19 N 1.46848 * 109.52504 * 300.82023 * 18 17 16 20 20 C 1.46847 * 111.19556 * 61.74015 * 19 18 17 21 21 C 1.53044 * 109.52516 * 298.25761 * 20 19 18 22 22 O 1.43377 * 108.79057 * 335.68377 * 13 12 11 23 23 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.97998 * 324.14771 * 11 9 7 25 25 H 1.08998 * 110.97700 * 87.90068 * 11 9 7 26 26 H 1.08997 * 109.47326 * 174.35676 * 15 13 12 27 27 H 1.09006 * 109.47071 * 54.36197 * 15 13 12 28 28 H 1.08992 * 109.57558 * 54.83791 * 16 15 13 29 29 H 1.09001 * 109.50624 * 57.61525 * 17 16 15 30 30 H 1.08998 * 109.50047 * 297.49982 * 17 16 15 31 31 H 1.09000 * 109.46341 * 180.80474 * 18 17 16 32 32 H 1.08999 * 109.46274 * 60.83372 * 18 17 16 33 33 H 1.00901 * 111.00066 * 185.83397 * 19 18 17 34 34 H 1.08999 * 109.46628 * 58.27319 * 20 19 18 35 35 H 1.09003 * 109.46158 * 178.24166 * 20 19 18 36 36 H 1.08996 * 109.50067 * 299.23984 * 21 20 19 37 37 H 1.08999 * 109.53710 * 179.14269 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6393 -2.5921 0.8978 11 6 2.2277 -3.6953 -0.1224 12 8 1.3832 -4.7037 -0.7277 13 6 0.5337 -3.9774 -1.6317 14 1 0.9614 -4.0040 -2.6340 15 6 -0.8587 -4.6113 -1.6500 16 6 -0.7706 -6.0183 -2.2444 17 6 -2.1381 -6.7006 -2.1492 18 6 -2.0593 -8.0834 -2.7998 19 7 -1.6597 -7.9423 -4.2058 20 6 -0.3287 -7.3326 -4.3208 21 6 -0.3558 -5.9272 -3.7156 22 8 0.4383 -2.6184 -1.1846 23 1 -0.4850 0.8401 -0.0004 24 1 3.0674 -3.4483 -0.7720 25 1 2.5773 -4.0161 0.8589 26 1 -1.5276 -4.0015 -2.2572 27 1 -1.2444 -4.6704 -0.6322 28 1 -0.0332 -6.6020 -1.6935 29 1 -2.8830 -6.0966 -2.6673 30 1 -2.4196 -6.8067 -1.1015 31 1 -3.0351 -8.5661 -2.7464 32 1 -1.3242 -8.6915 -2.2727 33 1 -1.6925 -8.8312 -4.6821 34 1 0.3984 -7.9441 -3.7864 35 1 -0.0475 -7.2699 -5.3721 36 1 -1.0727 -5.3111 -4.2583 37 1 0.6358 -5.4803 -3.7871 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258756099.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:24 Heat of formation + Delta-G solvation = -129.254799 kcal Electronic energy + Delta-G solvation = -17989.879617 eV Core-core repulsion = 15151.334788 eV Total energy + Delta-G solvation = -2838.544829 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.06742 -39.51745 -35.81668 -35.06902 -34.40905 -31.78006 -31.25934 -28.91619 -26.67627 -24.66460 -23.76381 -23.10726 -22.05095 -20.55794 -18.92873 -17.87760 -17.37410 -17.20582 -16.70393 -16.28893 -15.52816 -15.19249 -15.10431 -14.88443 -14.45852 -14.31617 -13.92967 -13.69987 -13.26101 -13.13269 -12.99704 -12.75952 -12.73439 -12.37279 -12.31972 -12.12613 -11.63184 -11.43426 -11.34132 -11.12270 -10.87726 -10.68235 -9.99514 -9.37997 -8.22421 -6.46504 1.41471 1.44719 1.52697 2.37441 2.79402 3.06911 3.32524 3.47537 3.80511 3.86176 3.93658 4.20319 4.24918 4.27060 4.31684 4.40954 4.53470 4.54242 4.60633 4.66453 4.70710 4.80145 4.93129 4.99452 5.01777 5.06991 5.17155 5.22105 5.30920 5.39047 5.52476 5.63151 6.02703 6.07481 6.49435 6.56296 6.80901 7.30842 8.86200 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049716 B = 0.005045 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.064620 B = 5549.155555 C = 5648.886480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.024 3.976 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.564 4.564 8 H 0.076 0.924 9 C 0.178 3.822 10 H 0.008 0.992 11 C 0.031 3.969 12 O -0.398 6.398 13 C 0.218 3.782 14 H 0.070 0.930 15 C -0.112 4.112 16 C -0.075 4.075 17 C -0.111 4.111 18 C 0.062 3.938 19 N -0.697 5.697 20 C 0.063 3.937 21 C -0.115 4.115 22 O -0.399 6.399 23 H 0.265 0.735 24 H 0.070 0.930 25 H 0.112 0.888 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.031 0.969 33 H 0.354 0.646 34 H 0.031 0.969 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.094 -14.231 -6.096 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.179 4.179 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.601 4.601 8 H 0.095 0.905 9 C 0.123 3.877 10 H 0.025 0.975 11 C -0.045 4.045 12 O -0.319 6.319 13 C 0.123 3.877 14 H 0.087 0.913 15 C -0.150 4.150 16 C -0.093 4.093 17 C -0.149 4.149 18 C -0.067 4.067 19 N -0.330 5.330 20 C -0.066 4.066 21 C -0.153 4.153 22 O -0.320 6.320 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.130 0.870 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.049 0.951 33 H 0.173 0.827 34 H 0.049 0.951 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.714 -13.617 -6.233 15.073 hybrid contribution 0.842 0.410 0.492 1.058 sum -0.872 -13.206 -5.742 14.427 Atomic orbital electron populations 1.70183 1.07983 1.27981 1.47698 1.26034 0.95658 1.03519 0.92713 0.85434 0.78261 0.77489 0.79375 1.19268 1.20813 1.18473 1.21391 0.93479 0.90767 1.54486 0.90545 1.21186 0.87444 0.94679 0.84391 0.97462 1.24438 0.94066 0.86845 0.99112 1.89005 1.51135 1.32134 1.59653 1.24143 0.91350 0.79804 0.92432 0.91311 1.21913 0.94935 0.96901 1.01289 1.21020 0.98146 0.94034 0.96123 1.21626 0.96145 0.96518 1.00606 1.21898 1.00879 0.95870 0.88074 1.60247 1.27932 1.30446 1.14335 1.21868 0.89351 0.94328 1.01059 1.21681 1.01154 0.97577 0.94842 1.89158 1.71602 1.25491 1.45795 0.92627 0.91133 0.86976 0.91093 0.92746 0.91795 0.91739 0.91322 0.89208 0.95068 0.82727 0.95115 0.89520 0.91823 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.75 12.95 21.45 0.28 -54.48 16 2 C 0.02 1.34 5.42 84.65 0.46 1.80 16 3 Si 0.97 43.33 29.54 68.60 2.03 45.35 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.56 -31.70 8.83 25.60 0.23 -31.47 16 8 H 0.08 4.01 7.78 -2.91 -0.02 3.99 16 9 C 0.18 9.58 3.51 30.50 0.11 9.69 16 10 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 11 C 0.03 1.35 7.37 72.64 0.54 1.89 16 12 O -0.40 -16.85 10.84 -126.22 -1.37 -18.22 16 13 C 0.22 9.45 3.89 71.98 0.28 9.73 16 14 H 0.07 2.83 6.41 -2.38 -0.02 2.82 16 15 C -0.11 -4.17 4.78 30.59 0.15 -4.02 16 16 C -0.07 -2.18 2.21 -10.72 -0.02 -2.20 16 17 C -0.11 -2.73 5.38 30.65 0.16 -2.57 16 18 C 0.06 1.22 6.55 86.32 0.57 1.79 16 19 N -0.70 -13.61 6.85 -513.99 -3.52 -17.13 16 20 C 0.06 1.33 6.55 86.33 0.57 1.90 16 21 C -0.11 -3.05 5.09 30.65 0.16 -2.90 16 22 O -0.40 -21.86 10.46 -126.22 -1.32 -23.18 16 23 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 24 H 0.07 2.91 8.04 -2.39 -0.02 2.89 16 25 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 26 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.05 2.13 8.14 -2.38 -0.02 2.12 16 28 H 0.06 1.98 7.73 -2.39 -0.02 1.97 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.35 5.15 8.90 -89.69 -0.80 4.35 16 34 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 1.69 6.59 -2.39 -0.02 1.67 16 Total: -1.00 -65.73 294.83 -0.48 -66.21 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.25 Total: 17.82 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 3.18 Total: -16.37 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -3.24 Total: -71.61 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -2.69 Total: -41.40 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -65.73 -0.48 -66.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258756099.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.047 kcal (2) G-P(sol) polarization free energy of solvation -65.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds