Wall clock time and date at job start Mon Mar 30 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99934 * 2 1 4 4 H 1.48492 * 109.47064 * 269.99995 * 3 2 1 5 5 H 1.48500 * 109.47057 * 30.00311 * 3 2 1 6 6 H 1.48505 * 109.46887 * 149.99905 * 3 2 1 7 7 C 1.37881 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99536 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00042 * 179.97438 * 7 2 1 10 10 H 1.08995 * 110.61533 * 56.92250 * 9 7 2 11 11 C 1.54905 * 110.69496 * 180.02562 * 9 7 2 12 12 O 1.44788 * 101.72192 * 153.96251 * 11 9 7 13 13 C 1.43752 * 104.81197 * 323.89049 * 12 11 9 14 14 H 1.09002 * 109.63304 * 264.43646 * 13 12 11 15 15 C 1.52997 * 109.62809 * 144.04346 * 13 12 11 16 16 C 1.53002 * 109.47086 * 66.09917 * 15 13 12 17 17 C 1.53123 * 109.52270 * 294.68061 * 16 15 13 18 18 C 1.53032 * 109.28116 * 182.44142 * 17 16 15 19 19 N 1.46842 * 109.52416 * 59.17585 * 18 17 16 20 20 C 1.46850 * 111.20098 * 298.26111 * 19 18 17 21 21 C 1.53038 * 109.52324 * 61.73789 * 20 19 18 22 22 O 1.43370 * 108.79300 * 24.31786 * 13 12 11 23 23 H 0.97004 * 120.00042 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.98434 * 35.84948 * 11 9 7 25 25 H 1.09008 * 110.97674 * 272.06446 * 11 9 7 26 26 H 1.09002 * 109.46908 * 186.09409 * 15 13 12 27 27 H 1.08993 * 109.47736 * 306.09966 * 15 13 12 28 28 H 1.08997 * 109.52607 * 54.87010 * 16 15 13 29 29 H 1.09007 * 109.49684 * 302.38184 * 17 16 15 30 30 H 1.08996 * 109.49897 * 62.49661 * 17 16 15 31 31 H 1.09001 * 109.46039 * 299.16345 * 18 17 16 32 32 H 1.09000 * 109.46192 * 179.19550 * 18 17 16 33 33 H 1.00899 * 110.99878 * 62.35837 * 19 18 17 34 34 H 1.08998 * 109.46041 * 301.72381 * 20 19 18 35 35 H 1.09000 * 109.46074 * 181.75662 * 20 19 18 36 36 H 1.08997 * 109.49988 * 180.88035 * 21 20 19 37 37 H 1.09001 * 109.53012 * 60.78617 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8956 -0.6368 0.8542 11 6 4.0589 -2.6432 0.0001 12 8 5.3543 -2.4684 -0.6228 13 6 5.1496 -1.4504 -1.6169 14 1 4.9596 -1.9159 -2.5840 15 6 6.3934 -0.5641 -1.7085 16 6 7.5673 -1.3865 -2.2439 17 6 7.9305 -2.4781 -1.2334 18 6 9.1432 -3.2580 -1.7460 19 7 10.2747 -2.3404 -1.9302 20 6 9.9664 -1.3113 -2.9314 21 6 8.7781 -0.4732 -2.4541 22 8 4.0206 -0.6531 -1.2359 23 1 -0.4850 0.8401 -0.0004 24 1 3.4249 -3.3000 -0.5956 25 1 4.1629 -3.0210 1.0173 26 1 6.1965 0.2696 -2.3825 27 1 6.6401 -0.1807 -0.7185 28 1 7.2881 -1.8452 -3.1924 29 1 8.1713 -2.0201 -0.2740 30 1 7.0863 -3.1566 -1.1117 31 1 8.8972 -3.7269 -2.6987 32 1 9.4132 -4.0268 -1.0220 33 1 10.5473 -1.9218 -1.0536 34 1 9.7165 -1.7894 -3.8785 35 1 10.8342 -0.6661 -3.0682 36 1 8.5397 0.2805 -3.2045 37 1 9.0320 0.0167 -1.5141 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258756102.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:27 Heat of formation + Delta-G solvation = -104.130603 kcal Electronic energy + Delta-G solvation = -18214.913349 eV Core-core repulsion = 15377.457987 eV Total energy + Delta-G solvation = -2837.455362 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.74378 -38.58828 -34.26930 -33.70140 -32.57612 -30.85673 -29.81933 -27.51456 -24.95598 -23.28037 -22.81744 -21.12474 -20.92400 -20.13128 -17.21488 -16.41242 -16.09126 -15.58372 -15.14638 -14.69235 -14.33223 -14.28376 -13.97741 -13.42597 -13.00829 -12.80140 -12.60688 -12.35057 -12.16616 -11.79109 -11.64701 -11.35172 -11.20407 -11.07002 -10.79803 -10.54982 -10.43756 -10.17925 -9.81518 -9.73589 -9.23494 -8.76377 -8.54944 -8.34421 -6.24702 -4.36151 3.31876 3.36532 3.45652 4.20242 4.31369 4.36727 4.53069 4.76804 4.94048 5.01615 5.14610 5.29940 5.34541 5.40421 5.49010 5.65802 5.72374 5.79672 5.81269 5.82787 5.90644 5.94772 6.01082 6.09431 6.16981 6.22626 6.34974 6.43321 6.58811 6.61571 6.96642 7.04503 7.27591 7.48348 8.09324 8.26231 8.73967 9.36724 10.85374 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044411 B = 0.006021 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.328380 B = 4648.941449 C = 5089.444918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.087 3.913 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.083 0.917 9 C 0.146 3.854 10 H 0.046 0.954 11 C 0.028 3.972 12 O -0.390 6.390 13 C 0.232 3.768 14 H 0.065 0.935 15 C -0.127 4.127 16 C -0.081 4.081 17 C -0.154 4.154 18 C 0.055 3.945 19 N -0.690 5.690 20 C 0.058 3.942 21 C -0.153 4.153 22 O -0.395 6.395 23 H 0.268 0.732 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.338 0.662 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.981 -2.593 -3.400 17.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.119 4.119 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.101 0.899 9 C 0.091 3.909 10 H 0.063 0.937 11 C -0.047 4.047 12 O -0.312 6.312 13 C 0.137 3.863 14 H 0.082 0.918 15 C -0.165 4.165 16 C -0.099 4.099 17 C -0.193 4.193 18 C -0.075 4.075 19 N -0.318 5.318 20 C -0.072 4.072 21 C -0.192 4.192 22 O -0.318 6.318 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 17.273 -2.848 -3.919 17.939 hybrid contribution -0.510 1.474 0.474 1.630 sum 16.763 -1.374 -3.445 17.168 Atomic orbital electron populations 1.69911 1.06530 1.27702 1.48105 1.25037 0.94742 0.99785 0.92296 0.86470 0.79737 0.82277 0.79008 1.19788 1.21980 1.19066 1.20914 0.87182 0.95226 1.53065 0.89923 1.21840 0.95922 0.89224 0.83907 0.93657 1.24356 0.82967 0.99318 0.98090 1.89078 1.31224 1.57597 1.53290 1.23739 0.87234 0.83778 0.91586 0.91816 1.22103 0.93923 0.98322 1.02161 1.21065 0.94040 0.95814 0.99019 1.22464 0.99977 0.98792 0.98033 1.22067 0.89090 0.95087 1.01219 1.60710 1.37166 1.20484 1.13418 1.21998 0.96408 0.92861 0.95946 1.22315 0.96442 0.98723 1.01701 1.89043 1.43758 1.55319 1.43641 0.92194 0.91373 0.89017 0.90665 0.91382 0.91349 0.92382 0.88526 0.91258 0.91012 0.84495 0.91102 0.91089 0.91603 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 2 C 0.09 2.51 5.47 -17.82 -0.10 2.42 16 3 Si 0.90 22.65 26.60 -169.99 -4.52 18.13 16 4 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.54 6.46 56.52 0.37 -6.17 16 7 C -0.53 -14.78 9.39 -34.44 -0.32 -15.11 16 8 H 0.08 2.44 8.00 -52.49 -0.42 2.02 16 9 C 0.15 3.52 2.86 -26.88 -0.08 3.44 16 10 H 0.05 1.12 7.03 -51.93 -0.37 0.75 16 11 C 0.03 0.57 7.37 38.16 0.28 0.85 16 12 O -0.39 -7.30 8.02 -59.04 -0.47 -7.78 16 13 C 0.23 4.45 3.98 37.16 0.15 4.60 16 14 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 15 C -0.13 -2.04 4.90 -26.73 -0.13 -2.17 16 16 C -0.08 -1.05 2.25 -90.50 -0.20 -1.25 16 17 C -0.15 -1.97 4.66 -26.65 -0.12 -2.10 16 18 C 0.05 0.60 6.55 -3.84 -0.03 0.58 16 19 N -0.69 -7.23 6.87 -113.82 -0.78 -8.02 16 20 C 0.06 0.57 6.55 -3.83 -0.03 0.55 16 21 C -0.15 -1.67 5.36 -26.65 -0.14 -1.81 16 22 O -0.40 -9.44 9.28 -59.04 -0.55 -9.99 16 23 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.07 1.37 8.02 -51.93 -0.42 0.95 16 25 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.10 1.42 5.46 -51.93 -0.28 1.13 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.34 3.26 8.86 -39.29 -0.35 2.92 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 288.13 15.07 4.34 4.34 Total: -1.00 -29.80 288.13 -8.01 -37.81 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.08 Total: 1.43 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -0.72 Total: -10.01 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: -0.01 Total: -33.94 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -1.02 Total: -17.77 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.52 Total: 18.13 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.80 -8.01 -37.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258756102.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.321 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds