Wall clock time and date at job start Mon Mar 30 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99934 * 2 1 4 4 H 1.48492 * 109.47064 * 269.99995 * 3 2 1 5 5 H 1.48500 * 109.47057 * 30.00311 * 3 2 1 6 6 H 1.48505 * 109.46887 * 149.99905 * 3 2 1 7 7 C 1.37881 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99536 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00042 * 179.97438 * 7 2 1 10 10 H 1.08995 * 110.61533 * 56.92250 * 9 7 2 11 11 C 1.54905 * 110.69496 * 180.02562 * 9 7 2 12 12 O 1.44788 * 101.72192 * 153.96251 * 11 9 7 13 13 C 1.43752 * 104.81197 * 323.89049 * 12 11 9 14 14 H 1.09002 * 109.63304 * 264.43646 * 13 12 11 15 15 C 1.52997 * 109.62809 * 144.04346 * 13 12 11 16 16 C 1.53002 * 109.47086 * 66.09917 * 15 13 12 17 17 C 1.53123 * 109.52270 * 294.68061 * 16 15 13 18 18 C 1.53032 * 109.28116 * 182.44142 * 17 16 15 19 19 N 1.46842 * 109.52416 * 59.17585 * 18 17 16 20 20 C 1.46850 * 111.20098 * 298.26111 * 19 18 17 21 21 C 1.53038 * 109.52324 * 61.73789 * 20 19 18 22 22 O 1.43370 * 108.79300 * 24.31786 * 13 12 11 23 23 H 0.97004 * 120.00042 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.98434 * 35.84948 * 11 9 7 25 25 H 1.09008 * 110.97674 * 272.06446 * 11 9 7 26 26 H 1.09002 * 109.46908 * 186.09409 * 15 13 12 27 27 H 1.08993 * 109.47736 * 306.09966 * 15 13 12 28 28 H 1.08997 * 109.52607 * 54.87010 * 16 15 13 29 29 H 1.09007 * 109.49684 * 302.38184 * 17 16 15 30 30 H 1.08996 * 109.49897 * 62.49661 * 17 16 15 31 31 H 1.09001 * 109.46039 * 299.16345 * 18 17 16 32 32 H 1.09000 * 109.46192 * 179.19550 * 18 17 16 33 33 H 1.00899 * 110.99878 * 62.35837 * 19 18 17 34 34 H 1.08998 * 109.46041 * 301.72381 * 20 19 18 35 35 H 1.09000 * 109.46074 * 181.75662 * 20 19 18 36 36 H 1.08997 * 109.49988 * 180.88035 * 21 20 19 37 37 H 1.09001 * 109.53012 * 60.78617 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8956 -0.6368 0.8542 11 6 4.0589 -2.6432 0.0001 12 8 5.3543 -2.4684 -0.6228 13 6 5.1496 -1.4504 -1.6169 14 1 4.9596 -1.9159 -2.5840 15 6 6.3934 -0.5641 -1.7085 16 6 7.5673 -1.3865 -2.2439 17 6 7.9305 -2.4781 -1.2334 18 6 9.1432 -3.2580 -1.7460 19 7 10.2747 -2.3404 -1.9302 20 6 9.9664 -1.3113 -2.9314 21 6 8.7781 -0.4732 -2.4541 22 8 4.0206 -0.6531 -1.2359 23 1 -0.4850 0.8401 -0.0004 24 1 3.4249 -3.3000 -0.5956 25 1 4.1629 -3.0210 1.0173 26 1 6.1965 0.2696 -2.3825 27 1 6.6401 -0.1807 -0.7185 28 1 7.2881 -1.8452 -3.1924 29 1 8.1713 -2.0201 -0.2740 30 1 7.0863 -3.1566 -1.1117 31 1 8.8972 -3.7269 -2.6987 32 1 9.4132 -4.0268 -1.0220 33 1 10.5473 -1.9218 -1.0536 34 1 9.7165 -1.7894 -3.8785 35 1 10.8342 -0.6661 -3.0682 36 1 8.5397 0.2805 -3.2045 37 1 9.0320 0.0167 -1.5141 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258756102.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:27 Heat of formation + Delta-G solvation = -125.076964 kcal Electronic energy + Delta-G solvation = -18215.821652 eV Core-core repulsion = 15377.457987 eV Total energy + Delta-G solvation = -2838.363664 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.26709 -39.66605 -35.98395 -35.04819 -34.49024 -31.80751 -31.44027 -28.90374 -26.82592 -24.44564 -23.76360 -22.85384 -22.29262 -21.12558 -19.29036 -17.90304 -17.72355 -16.80442 -16.70759 -16.06291 -15.53561 -15.41653 -15.20923 -14.84611 -14.66359 -14.58237 -14.13459 -13.58203 -13.46898 -13.19686 -12.96168 -12.86148 -12.51385 -12.44370 -12.11039 -12.08807 -11.85079 -11.61290 -11.41796 -11.15016 -10.96002 -10.88834 -10.27316 -9.25132 -8.45508 -6.60843 1.29744 1.35625 1.44324 2.27528 2.60475 2.90728 3.33461 3.46382 3.73628 3.87977 4.00012 4.03541 4.17533 4.23514 4.25696 4.41725 4.48071 4.50460 4.53190 4.61120 4.70795 4.84862 4.91269 5.00019 5.02713 5.12181 5.12980 5.18137 5.21939 5.43974 5.46811 5.54283 6.03940 6.12998 6.36576 6.51042 6.54233 7.15565 8.68330 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044411 B = 0.006021 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.328380 B = 4648.941449 C = 5089.444918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.036 3.964 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.255 1.255 7 C -0.536 4.536 8 H 0.053 0.947 9 C 0.144 3.856 10 H 0.045 0.955 11 C 0.036 3.964 12 O -0.377 6.377 13 C 0.224 3.776 14 H 0.071 0.929 15 C -0.120 4.120 16 C -0.077 4.077 17 C -0.148 4.148 18 C 0.061 3.939 19 N -0.692 5.692 20 C 0.060 3.940 21 C -0.146 4.146 22 O -0.419 6.419 23 H 0.272 0.728 24 H 0.064 0.936 25 H 0.117 0.883 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.344 0.656 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.513 -2.196 -3.725 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.166 4.166 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.179 1.179 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.089 3.911 10 H 0.062 0.938 11 C -0.040 4.040 12 O -0.298 6.298 13 C 0.129 3.871 14 H 0.089 0.911 15 C -0.158 4.158 16 C -0.095 4.095 17 C -0.187 4.187 18 C -0.068 4.068 19 N -0.320 5.320 20 C -0.069 4.069 21 C -0.186 4.186 22 O -0.342 6.342 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.135 0.865 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.162 0.838 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.825 -2.462 -4.240 20.422 hybrid contribution -1.292 1.264 0.537 1.886 sum 18.533 -1.197 -3.703 18.937 Atomic orbital electron populations 1.70013 1.08019 1.28764 1.49933 1.25831 0.95421 1.03158 0.92155 0.85570 0.79024 0.78579 0.78848 1.20147 1.20818 1.17929 1.21162 0.89559 0.94123 1.52461 0.92834 1.21682 0.93606 0.91814 0.84013 0.93765 1.24258 0.83263 0.96836 0.99655 1.89132 1.30157 1.57475 1.53064 1.24077 0.87283 0.84050 0.91713 0.91129 1.22059 0.93476 0.98193 1.02048 1.21046 0.93751 0.95879 0.98868 1.22383 1.00089 0.98441 0.97788 1.22000 0.88421 0.95118 1.01303 1.60718 1.36605 1.20754 1.13931 1.22026 0.96507 0.92741 0.95652 1.22267 0.95755 0.98536 1.01993 1.88947 1.45700 1.56275 1.43293 0.91838 0.91758 0.86482 0.90351 0.92169 0.91149 0.93036 0.90421 0.91271 0.90269 0.83843 0.91068 0.89449 0.90878 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.04 13.96 21.45 0.30 -56.74 16 2 C 0.04 2.09 5.47 84.66 0.46 2.55 16 3 Si 0.95 46.59 26.60 68.60 1.83 48.42 16 4 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.26 -11.88 6.46 99.48 0.64 -11.24 16 7 C -0.54 -30.52 9.39 25.60 0.24 -30.28 16 8 H 0.05 3.27 8.00 -2.91 -0.02 3.25 16 9 C 0.14 6.87 2.86 30.50 0.09 6.96 16 10 H 0.04 2.13 7.03 -2.39 -0.02 2.11 16 11 C 0.04 1.40 7.37 72.63 0.54 1.93 16 12 O -0.38 -13.53 8.02 -126.22 -1.01 -14.54 16 13 C 0.22 8.28 3.98 71.98 0.29 8.56 16 14 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 15 C -0.12 -3.62 4.90 30.59 0.15 -3.47 16 16 C -0.08 -1.82 2.25 -10.71 -0.02 -1.85 16 17 C -0.15 -3.50 4.66 30.65 0.14 -3.35 16 18 C 0.06 1.20 6.55 86.33 0.57 1.77 16 19 N -0.69 -12.54 6.87 -514.02 -3.53 -16.07 16 20 C 0.06 1.01 6.55 86.33 0.57 1.58 16 21 C -0.15 -2.79 5.36 30.64 0.16 -2.62 16 22 O -0.42 -19.66 9.28 -126.22 -1.17 -20.83 16 23 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 24 H 0.06 2.56 8.02 -2.39 -0.02 2.54 16 25 H 0.12 3.97 8.14 -2.38 -0.02 3.95 16 26 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.08 2.14 5.46 -2.39 -0.01 2.13 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.34 5.66 8.86 -89.69 -0.79 4.87 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -63.41 288.13 -0.23 -63.64 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.19 Total: 14.36 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 3.18 Total: -18.23 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -3.23 Total: -72.81 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -2.18 Total: -35.38 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.83 Total: 48.42 kcal Total: -63.41 -0.23 -63.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258756102.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.441 kcal (2) G-P(sol) polarization free energy of solvation -63.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds