Wall clock time and date at job start Mon Mar 30 2020 03:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00044 * 2 1 4 4 H 1.48495 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46745 * 300.00013 * 3 2 1 6 6 H 1.48504 * 109.46839 * 59.99896 * 3 2 1 7 7 C 1.37872 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00255 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00218 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.64825 * 59.29804 * 9 7 2 11 11 C 1.54452 * 110.88315 * 182.57001 * 9 7 2 12 12 O 1.43896 * 105.08158 * 140.21949 * 11 9 7 13 13 C 1.43782 * 107.10445 * 1.70913 * 12 11 9 14 14 H 1.08996 * 110.11189 * 94.09005 * 13 12 11 15 15 C 1.52999 * 110.16731 * 215.70884 * 13 12 11 16 16 C 1.53000 * 109.47118 * 291.77523 * 15 13 12 17 17 C 1.53116 * 109.52128 * 294.87102 * 16 15 13 18 18 C 1.53042 * 109.27325 * 182.50207 * 17 16 15 19 19 N 1.46854 * 109.57595 * 59.08602 * 18 17 16 20 20 C 1.46842 * 111.19505 * 298.29074 * 19 18 17 21 21 C 1.53030 * 109.52798 * 61.73868 * 20 19 18 22 22 O 1.44389 * 106.17353 * 334.91422 * 13 12 11 23 23 H 0.96998 * 120.00354 * 359.97438 * 1 2 3 24 24 H 1.09001 * 110.31874 * 259.12145 * 11 9 7 25 25 H 1.09004 * 110.32149 * 21.31712 * 11 9 7 26 26 H 1.09008 * 109.46923 * 51.77182 * 15 13 12 27 27 H 1.08996 * 109.47339 * 171.77557 * 15 13 12 28 28 H 1.09004 * 109.51889 * 55.00043 * 16 15 13 29 29 H 1.08997 * 109.50447 * 302.38078 * 17 16 15 30 30 H 1.09004 * 109.50491 * 62.49914 * 17 16 15 31 31 H 1.09000 * 109.41517 * 299.07128 * 18 17 16 32 32 H 1.09007 * 109.45431 * 179.12726 * 18 17 16 33 33 H 1.00894 * 110.99974 * 174.18958 * 19 18 17 34 34 H 1.09007 * 109.46043 * 301.72275 * 20 19 18 35 35 H 1.09001 * 109.45444 * 181.75345 * 20 19 18 36 36 H 1.09000 * 109.50979 * 180.87669 * 21 20 19 37 37 H 1.09001 * 109.53263 * 60.77842 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 1 0.6082 -2.5711 -0.8790 11 6 2.2242 -3.6967 0.0626 12 8 1.5972 -4.6416 0.9484 13 6 0.3362 -4.0765 1.3455 14 1 -0.4583 -4.4363 0.6918 15 6 0.0279 -4.4434 2.7985 16 6 -0.2417 -5.9461 2.8989 17 6 -1.5134 -6.2910 2.1190 18 6 -1.8122 -7.7839 2.2748 19 7 -1.9850 -8.1053 3.6972 20 6 -0.7597 -7.8269 4.4571 21 6 -0.4302 -6.3352 4.3678 22 8 0.4774 -2.6455 1.2140 23 1 -0.4850 0.8400 0.0004 24 1 2.3525 -4.1338 -0.9277 25 1 3.1867 -3.3812 0.4655 26 1 0.8798 -4.1843 3.4273 27 1 -0.8515 -3.8934 3.1334 28 1 0.6020 -6.4961 2.4819 29 1 -2.3489 -5.7108 2.5104 30 1 -1.3686 -6.0559 1.0645 31 1 -0.9828 -8.3636 1.8696 32 1 -2.7258 -8.0297 1.7333 33 1 -2.2759 -9.0638 3.8186 34 1 0.0649 -8.4064 4.0417 35 1 -0.9088 -8.1041 5.5007 36 1 0.4878 -6.1315 4.9190 37 1 -1.2479 -5.7551 4.7958 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258756105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:29 Heat of formation + Delta-G solvation = -109.584929 kcal Electronic energy + Delta-G solvation = -17955.502801 eV Core-core repulsion = 15117.810921 eV Total energy + Delta-G solvation = -2837.691879 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.34322 -38.33836 -34.00369 -33.64249 -32.47928 -30.79183 -29.57927 -27.39262 -24.72411 -23.38993 -22.69417 -21.31869 -20.41420 -19.38229 -16.97282 -16.65146 -16.05327 -15.12296 -14.70758 -14.60966 -14.37282 -14.06577 -13.90549 -13.86799 -13.05645 -12.54578 -12.39717 -12.18682 -11.93164 -11.70630 -11.24307 -11.17036 -11.11726 -10.94242 -10.55441 -10.43151 -10.35121 -10.08665 -9.88881 -9.37362 -8.93209 -8.67642 -8.53603 -8.34094 -6.14215 -4.28753 3.24867 3.32679 3.36612 4.15819 4.32664 4.62751 4.73426 4.90302 4.96287 5.12436 5.25337 5.36776 5.45710 5.54419 5.64779 5.69665 5.82018 5.83330 5.97253 6.01886 6.12205 6.14863 6.21490 6.28041 6.29801 6.40964 6.52584 6.59257 6.74143 6.96057 7.11070 7.27569 7.29217 7.75811 8.07075 8.36119 8.80197 9.43145 10.94141 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049613 B = 0.005002 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.231003 B = 5596.104750 C = 5681.586439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.078 3.922 3 Si 0.899 3.101 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.069 0.931 9 C 0.180 3.820 10 H 0.039 0.961 11 C 0.026 3.974 12 O -0.406 6.406 13 C 0.217 3.783 14 H 0.053 0.947 15 C -0.107 4.107 16 C -0.083 4.083 17 C -0.116 4.116 18 C 0.059 3.941 19 N -0.691 5.691 20 C 0.059 3.941 21 C -0.112 4.112 22 O -0.357 6.357 23 H 0.264 0.736 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.338 0.662 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.251 -13.469 5.242 14.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.129 4.129 3 Si 0.726 3.274 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.087 0.913 9 C 0.125 3.875 10 H 0.056 0.944 11 C -0.051 4.051 12 O -0.328 6.328 13 C 0.121 3.879 14 H 0.070 0.930 15 C -0.145 4.145 16 C -0.102 4.102 17 C -0.154 4.154 18 C -0.070 4.070 19 N -0.322 5.322 20 C -0.070 4.070 21 C -0.150 4.150 22 O -0.277 6.277 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.705 -12.773 5.596 14.205 hybrid contribution 0.926 0.171 -0.509 1.071 sum -1.779 -12.603 5.087 13.706 Atomic orbital electron populations 1.70031 1.06175 1.26953 1.46709 1.25092 0.94857 0.99632 0.93302 0.86437 0.80175 0.83028 0.77776 1.19446 1.20714 1.20663 1.20949 0.92850 0.89264 1.54092 0.91299 1.21309 0.87741 0.93478 0.84985 0.94375 1.24092 0.98446 0.90203 0.92360 1.88697 1.34131 1.43998 1.65999 1.24116 0.86348 0.82919 0.94529 0.92983 1.21661 1.02417 0.94832 0.95578 1.21098 0.97769 0.96080 0.95215 1.21720 0.98070 0.95041 1.00533 1.21933 0.99918 0.96911 0.88285 1.60283 1.33652 1.28207 1.10087 1.21918 0.90459 0.96907 0.97764 1.21636 1.01569 0.95111 0.96660 1.89774 1.74372 1.17410 1.46155 0.92660 0.92268 0.91091 0.91007 0.90519 0.90919 0.91091 0.91235 0.95329 0.91013 0.84500 0.95370 0.91094 0.91584 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.51 13.05 55.43 0.72 -24.79 16 2 C 0.08 2.19 5.43 -17.82 -0.10 2.09 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -15.01 8.81 -34.44 -0.30 -15.31 16 8 H 0.07 1.86 7.58 -52.48 -0.40 1.46 16 9 C 0.18 4.75 3.20 -27.12 -0.09 4.67 16 10 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 11 C 0.03 0.57 7.65 37.92 0.29 0.86 16 12 O -0.41 -8.87 10.90 -59.28 -0.65 -9.52 16 13 C 0.22 4.67 3.75 37.16 0.14 4.81 16 14 H 0.05 1.09 6.39 -51.93 -0.33 0.76 16 15 C -0.11 -1.92 4.81 -26.73 -0.13 -2.05 16 16 C -0.08 -1.22 2.22 -90.50 -0.20 -1.42 16 17 C -0.12 -1.59 5.09 -26.65 -0.14 -1.73 16 18 C 0.06 0.68 6.55 -3.83 -0.03 0.65 16 19 N -0.69 -7.53 6.85 -113.81 -0.78 -8.31 16 20 C 0.06 0.64 6.55 -3.84 -0.03 0.61 16 21 C -0.11 -1.40 5.38 -26.65 -0.14 -1.55 16 22 O -0.36 -9.57 10.91 -59.28 -0.65 -10.22 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.07 1.57 7.69 -51.93 -0.40 1.17 16 26 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 27 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 28 H 0.07 1.14 7.84 -51.93 -0.41 0.74 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.00 6.57 -51.93 -0.34 0.66 16 31 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.34 2.93 8.90 -39.29 -0.35 2.58 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 294.84 15.07 4.44 4.44 Total: -1.00 -30.70 294.84 -8.66 -39.35 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.01 Total: 1.25 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -0.72 Total: -8.36 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: -0.06 Total: -33.10 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -1.29 Total: -19.74 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.70 -8.66 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258756105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.231 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds