Wall clock time and date at job start Mon Mar 30 2020 03:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00044 * 2 1 4 4 H 1.48495 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46745 * 300.00013 * 3 2 1 6 6 H 1.48504 * 109.46839 * 59.99896 * 3 2 1 7 7 C 1.37872 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00255 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00218 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.64825 * 59.29804 * 9 7 2 11 11 C 1.54452 * 110.88315 * 182.57001 * 9 7 2 12 12 O 1.43896 * 105.08158 * 140.21949 * 11 9 7 13 13 C 1.43782 * 107.10445 * 1.70913 * 12 11 9 14 14 H 1.08996 * 110.11189 * 94.09005 * 13 12 11 15 15 C 1.52999 * 110.16731 * 215.70884 * 13 12 11 16 16 C 1.53000 * 109.47118 * 291.77523 * 15 13 12 17 17 C 1.53116 * 109.52128 * 294.87102 * 16 15 13 18 18 C 1.53042 * 109.27325 * 182.50207 * 17 16 15 19 19 N 1.46854 * 109.57595 * 59.08602 * 18 17 16 20 20 C 1.46842 * 111.19505 * 298.29074 * 19 18 17 21 21 C 1.53030 * 109.52798 * 61.73868 * 20 19 18 22 22 O 1.44389 * 106.17353 * 334.91422 * 13 12 11 23 23 H 0.96998 * 120.00354 * 359.97438 * 1 2 3 24 24 H 1.09001 * 110.31874 * 259.12145 * 11 9 7 25 25 H 1.09004 * 110.32149 * 21.31712 * 11 9 7 26 26 H 1.09008 * 109.46923 * 51.77182 * 15 13 12 27 27 H 1.08996 * 109.47339 * 171.77557 * 15 13 12 28 28 H 1.09004 * 109.51889 * 55.00043 * 16 15 13 29 29 H 1.08997 * 109.50447 * 302.38078 * 17 16 15 30 30 H 1.09004 * 109.50491 * 62.49914 * 17 16 15 31 31 H 1.09000 * 109.41517 * 299.07128 * 18 17 16 32 32 H 1.09007 * 109.45431 * 179.12726 * 18 17 16 33 33 H 1.00894 * 110.99974 * 174.18958 * 19 18 17 34 34 H 1.09007 * 109.46043 * 301.72275 * 20 19 18 35 35 H 1.09001 * 109.45444 * 181.75345 * 20 19 18 36 36 H 1.09000 * 109.50979 * 180.87669 * 21 20 19 37 37 H 1.09001 * 109.53263 * 60.77842 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 1 0.6082 -2.5711 -0.8790 11 6 2.2242 -3.6967 0.0626 12 8 1.5972 -4.6416 0.9484 13 6 0.3362 -4.0765 1.3455 14 1 -0.4583 -4.4363 0.6918 15 6 0.0279 -4.4434 2.7985 16 6 -0.2417 -5.9461 2.8989 17 6 -1.5134 -6.2910 2.1190 18 6 -1.8122 -7.7839 2.2748 19 7 -1.9850 -8.1053 3.6972 20 6 -0.7597 -7.8269 4.4571 21 6 -0.4302 -6.3352 4.3678 22 8 0.4774 -2.6455 1.2140 23 1 -0.4850 0.8400 0.0004 24 1 2.3525 -4.1338 -0.9277 25 1 3.1867 -3.3812 0.4655 26 1 0.8798 -4.1843 3.4273 27 1 -0.8515 -3.8934 3.1334 28 1 0.6020 -6.4961 2.4819 29 1 -2.3489 -5.7108 2.5104 30 1 -1.3686 -6.0559 1.0645 31 1 -0.9828 -8.3636 1.8696 32 1 -2.7258 -8.0297 1.7333 33 1 -2.2759 -9.0638 3.8186 34 1 0.0649 -8.4064 4.0417 35 1 -0.9088 -8.1041 5.5007 36 1 0.4878 -6.1315 4.9190 37 1 -1.2479 -5.7551 4.7958 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258756105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:29 Heat of formation + Delta-G solvation = -131.124937 kcal Electronic energy + Delta-G solvation = -17956.436845 eV Core-core repulsion = 15117.810921 eV Total energy + Delta-G solvation = -2838.625924 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.03883 -39.53329 -35.82028 -35.08642 -34.44986 -31.77781 -31.30754 -28.96360 -26.70754 -24.67345 -23.76135 -23.20413 -21.87242 -20.53450 -19.01032 -17.92437 -17.60403 -16.91067 -16.60111 -16.22044 -15.64067 -15.52238 -15.21561 -14.95376 -14.38064 -14.37323 -13.76026 -13.73341 -13.43302 -13.04314 -13.01649 -12.80984 -12.69862 -12.39104 -12.14890 -12.06779 -11.63617 -11.42106 -11.28250 -11.14824 -10.93096 -10.64463 -10.26674 -9.37917 -8.27140 -6.50069 1.40018 1.41409 1.54646 2.35406 2.82581 3.00556 3.32547 3.40732 3.80073 3.84809 3.99156 4.14459 4.18022 4.31149 4.33300 4.36848 4.49584 4.55932 4.59684 4.67338 4.70344 4.81362 4.93489 5.00653 5.04168 5.07315 5.19455 5.23202 5.25492 5.36418 5.51890 5.60401 5.98997 6.07691 6.40486 6.56295 6.69490 7.26892 8.82574 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049613 B = 0.005002 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.231003 B = 5596.104750 C = 5681.586439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 0.973 3.027 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.280 1.280 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.171 3.829 10 H 0.014 0.986 11 C 0.035 3.965 12 O -0.404 6.404 13 C 0.213 3.787 14 H 0.058 0.942 15 C -0.100 4.100 16 C -0.075 4.075 17 C -0.116 4.116 18 C 0.063 3.937 19 N -0.697 5.697 20 C 0.061 3.939 21 C -0.110 4.110 22 O -0.391 6.391 23 H 0.266 0.734 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.085 0.915 33 H 0.354 0.646 34 H 0.031 0.969 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.689 -14.345 5.908 15.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.180 4.180 3 Si 0.796 3.204 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.206 1.206 7 C -0.594 4.594 8 H 0.093 0.907 9 C 0.115 3.885 10 H 0.032 0.968 11 C -0.042 4.042 12 O -0.326 6.326 13 C 0.117 3.883 14 H 0.075 0.925 15 C -0.137 4.137 16 C -0.093 4.093 17 C -0.154 4.154 18 C -0.066 4.066 19 N -0.330 5.330 20 C -0.068 4.068 21 C -0.148 4.148 22 O -0.312 6.312 23 H 0.075 0.925 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.104 0.896 33 H 0.173 0.827 34 H 0.049 0.951 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.138 -13.681 6.262 15.197 hybrid contribution 0.713 0.395 -0.725 1.091 sum -1.425 -13.286 5.537 14.464 Atomic orbital electron populations 1.70160 1.07947 1.28064 1.47832 1.26039 0.95719 1.03578 0.92623 0.85296 0.79153 0.78001 0.77915 1.18232 1.19705 1.20554 1.21360 0.93419 0.90429 1.54190 0.90692 1.21266 0.88181 0.94851 0.84169 0.96842 1.24012 0.97413 0.88910 0.93856 1.88679 1.34212 1.43655 1.66032 1.24410 0.86287 0.80641 0.96919 0.92507 1.21645 1.01892 0.97352 0.92841 1.21026 0.97902 0.93243 0.97157 1.21695 0.97255 0.96937 0.99530 1.21858 1.00689 0.94942 0.89098 1.60243 1.33696 1.29536 1.09478 1.21910 0.90583 0.95310 0.98991 1.21618 1.01802 0.96608 0.94742 1.89703 1.74815 1.20651 1.46057 0.92463 0.89635 0.90702 0.91734 0.90773 0.91744 0.91770 0.92416 0.95121 0.89634 0.82726 0.95064 0.89111 0.90970 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.46 13.05 21.44 0.28 -54.18 16 2 C 0.02 1.31 5.43 84.65 0.46 1.77 16 3 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.56 -31.58 8.81 25.60 0.23 -31.35 16 8 H 0.07 4.03 7.58 -2.91 -0.02 4.01 16 9 C 0.17 9.19 3.20 30.34 0.10 9.29 16 10 H 0.01 0.79 8.14 -2.39 -0.02 0.77 16 11 C 0.03 1.53 7.65 72.48 0.55 2.08 16 12 O -0.40 -17.48 10.90 -125.98 -1.37 -18.85 16 13 C 0.21 9.28 3.75 71.98 0.27 9.55 16 14 H 0.06 2.42 6.39 -2.39 -0.02 2.41 16 15 C -0.10 -3.59 4.81 30.59 0.15 -3.44 16 16 C -0.07 -2.13 2.22 -10.72 -0.02 -2.15 16 17 C -0.12 -3.11 5.09 30.65 0.16 -2.95 16 18 C 0.06 1.34 6.55 86.33 0.57 1.90 16 19 N -0.70 -13.41 6.85 -513.99 -3.52 -16.93 16 20 C 0.06 1.17 6.55 86.32 0.57 1.73 16 21 C -0.11 -2.58 5.38 30.64 0.16 -2.41 16 22 O -0.39 -21.54 10.91 -125.98 -1.37 -22.91 16 23 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 24 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 25 H 0.07 3.25 7.69 -2.39 -0.02 3.23 16 26 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 27 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.06 1.96 7.84 -2.38 -0.02 1.94 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 1.65 6.57 -2.38 -0.02 1.64 16 31 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.35 5.08 8.90 -89.70 -0.80 4.28 16 34 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -65.76 294.84 -0.53 -66.30 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.25 Total: 17.05 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 3.18 Total: -15.98 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -3.24 Total: -71.11 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -2.75 Total: -41.76 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -65.76 -0.53 -66.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258756105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.830 kcal (2) G-P(sol) polarization free energy of solvation -65.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds