Wall clock time and date at job start Mon Mar 30 2020 03:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99944 * 2 1 4 4 H 1.48502 * 109.47016 * 239.99417 * 3 2 1 5 5 H 1.48498 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47110 * 119.99752 * 3 2 1 7 7 C 1.37880 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99580 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46882 * 179.97438 * 9 7 2 11 11 O 1.21280 * 120.00182 * 0.02562 * 10 9 7 12 12 N 1.34775 * 119.99850 * 180.02562 * 10 9 7 13 13 C 1.46494 * 120.00354 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47795 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47540 * 179.97438 * 14 13 12 16 16 C 1.53175 * 109.53913 * 65.44548 * 15 14 13 17 17 C 1.53092 * 109.16179 * 176.85000 * 16 15 14 18 18 O 1.42910 * 109.41107 * 302.39040 * 17 16 15 19 19 C 1.42900 * 114.09727 * 61.16189 * 18 17 16 20 20 C 1.53090 * 109.41229 * 298.83586 * 19 18 17 21 21 H 0.97003 * 120.00253 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.46863 * 59.99949 * 9 7 2 23 23 H 1.08997 * 109.47397 * 299.99938 * 9 7 2 24 24 H 0.97002 * 120.00038 * 359.97438 * 12 10 9 25 25 H 1.09009 * 109.46956 * 59.99811 * 13 12 10 26 26 H 1.09005 * 109.47149 * 300.00230 * 13 12 10 27 27 H 1.09005 * 109.46474 * 59.99873 * 14 13 12 28 28 H 1.09005 * 109.47030 * 300.00389 * 14 13 12 29 29 H 1.08997 * 109.61228 * 305.22843 * 15 14 13 30 30 H 1.09006 * 109.52647 * 296.75300 * 16 15 14 31 31 H 1.08998 * 109.52537 * 56.94192 * 16 15 14 32 32 H 1.08998 * 109.48147 * 182.40843 * 17 16 15 33 33 H 1.08997 * 109.48550 * 62.37144 * 17 16 15 34 34 H 1.09003 * 109.47953 * 178.86010 * 19 18 17 35 35 H 1.08995 * 109.49265 * 58.82602 * 19 18 17 36 36 H 1.09001 * 109.52724 * 297.70937 * 20 19 18 37 37 H 1.09000 * 109.52338 * 177.51272 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4227 -3.4230 0.0010 12 7 1.7811 -4.9153 0.0000 13 6 2.7330 -6.0288 0.0006 14 6 1.9680 -7.3539 0.0005 15 6 2.9623 -8.5168 0.0004 16 6 3.7511 -8.5165 1.3134 17 6 4.6866 -9.7280 1.3379 18 8 3.9192 -10.9239 1.1855 19 6 3.1976 -11.0011 -0.0455 20 6 2.2022 -9.8407 -0.1255 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 0.8274 -5.0925 0.0000 25 1 3.3590 -5.9712 0.8911 26 1 3.3604 -5.9710 -0.8889 27 1 1.3418 -7.4116 -0.8898 28 1 1.3409 -7.4115 0.8902 29 1 3.6502 -8.4100 -0.8383 30 1 4.3386 -7.6011 1.3853 31 1 3.0594 -8.5733 2.1539 32 1 5.2195 -9.7567 2.2883 33 1 5.4040 -9.6500 0.5210 34 1 2.6577 -11.9469 -0.0917 35 1 3.8953 -10.9397 -0.8806 36 1 1.4793 -9.9243 0.6859 37 1 1.6820 -9.8724 -1.0829 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258770782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:39 Heat of formation + Delta-G solvation = -115.010329 kcal Electronic energy + Delta-G solvation = -17004.418731 eV Core-core repulsion = 14166.491589 eV Total energy + Delta-G solvation = -2837.927142 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.74181 -38.58402 -35.92920 -33.53960 -32.90481 -31.36211 -29.91914 -28.44745 -25.12603 -23.81539 -23.22695 -21.61572 -20.34216 -19.47202 -16.51838 -16.28403 -16.24464 -15.91413 -15.48806 -15.06237 -14.87860 -14.47072 -14.33092 -13.88133 -13.30501 -12.80777 -12.51178 -12.37371 -12.08877 -11.89379 -11.62802 -11.52714 -11.16196 -10.97764 -10.79255 -10.60495 -10.49915 -10.47016 -9.94644 -9.74501 -9.27218 -8.62778 -8.46837 -8.37537 -6.04524 -4.03985 3.38234 3.40115 3.45643 3.63707 3.74949 3.89652 4.43862 4.48159 4.52619 4.65974 4.76398 4.94426 5.09938 5.16524 5.23656 5.32439 5.33791 5.41811 5.46907 5.57423 5.64563 5.75059 5.80394 5.87415 5.99301 6.12067 6.21704 6.42545 6.94823 7.07619 7.21074 7.34710 7.97204 8.08076 8.46667 9.06681 9.26062 9.61046 11.07935 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.066080 B = 0.003566 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.624642 B = 7848.972645 C = 8121.671938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.054 3.946 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.074 0.926 9 C 0.005 3.995 10 C 0.513 3.487 11 O -0.548 6.548 12 N -0.751 5.751 13 C 0.119 3.881 14 C -0.124 4.124 15 C -0.086 4.086 16 C -0.156 4.156 17 C 0.060 3.940 18 O -0.386 6.386 19 C 0.060 3.940 20 C -0.151 4.151 21 H 0.262 0.738 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.395 0.605 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.967 -21.006 0.090 21.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.146 4.146 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.092 0.908 9 C -0.034 4.034 10 C 0.303 3.697 11 O -0.424 6.424 12 N -0.405 5.405 13 C -0.005 4.005 14 C -0.162 4.162 15 C -0.105 4.105 16 C -0.193 4.193 17 C -0.017 4.017 18 O -0.305 6.305 19 C -0.017 4.017 20 C -0.188 4.188 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.228 0.772 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.699 -20.845 0.230 21.172 hybrid contribution -0.155 1.030 -0.241 1.069 sum 3.544 -19.815 -0.012 20.130 Atomic orbital electron populations 1.69950 1.06048 1.27004 1.51166 1.25013 0.94914 0.99483 0.95226 0.86478 0.79376 0.82260 0.78867 1.20126 1.21359 1.20113 1.21140 0.94237 0.89192 1.50147 0.90763 1.19231 0.94172 0.90631 0.99413 1.22009 0.91074 0.83485 0.73142 1.90527 1.18093 1.84732 1.49052 1.46326 1.09518 1.06060 1.78607 1.21222 0.92514 0.85156 1.01647 1.21822 0.98200 0.93382 1.02784 1.21128 0.97164 0.94106 0.98121 1.22337 0.99640 0.99135 0.98204 1.22606 0.92845 0.84296 1.01920 1.87922 1.63688 1.40023 1.38854 1.22571 0.93751 0.98699 0.86631 1.22248 0.98860 0.94771 1.02958 0.92860 0.93517 0.93498 0.77150 0.92145 0.92423 0.91210 0.91213 0.90761 0.90182 0.90849 0.88886 0.93189 0.89033 0.93268 0.90898 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.99 8.92 -34.44 -0.31 -15.29 16 8 H 0.07 2.28 6.75 -52.49 -0.35 1.92 16 9 C 0.00 0.12 5.46 -29.03 -0.16 -0.04 16 10 C 0.51 11.87 7.82 -10.98 -0.09 11.78 16 11 O -0.55 -14.56 15.46 5.56 0.09 -14.47 16 12 N -0.75 -12.92 5.56 -60.29 -0.33 -13.25 16 13 C 0.12 1.70 5.44 -4.05 -0.02 1.68 16 14 C -0.12 -1.27 4.80 -26.73 -0.13 -1.40 16 15 C -0.09 -0.79 2.27 -90.44 -0.21 -0.99 16 16 C -0.16 -1.46 5.10 -26.59 -0.14 -1.60 16 17 C 0.06 0.54 6.84 37.21 0.25 0.79 16 18 O -0.39 -4.00 10.77 -35.23 -0.38 -4.38 16 19 C 0.06 0.49 6.84 37.20 0.25 0.74 16 20 C -0.15 -1.20 5.42 -26.59 -0.14 -1.34 16 21 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 22 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 24 H 0.40 5.72 8.47 -40.82 -0.35 5.38 16 25 H 0.06 0.92 6.66 -51.92 -0.35 0.57 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.79 6.75 -51.93 -0.35 0.44 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 303.10 15.07 4.57 4.57 Total: -1.00 -33.33 303.10 -7.15 -40.48 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.03 Total: -0.12 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -0.78 Total: -4.19 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.40 Total: -39.20 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.29 Total: -18.85 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.33 -7.15 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258770782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.531 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds