Wall clock time and date at job start Mon Mar 30 2020 03:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99944 * 2 1 4 4 H 1.48502 * 109.47016 * 239.99417 * 3 2 1 5 5 H 1.48498 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47110 * 119.99752 * 3 2 1 7 7 C 1.37880 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99580 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46882 * 179.97438 * 9 7 2 11 11 O 1.21280 * 120.00182 * 0.02562 * 10 9 7 12 12 N 1.34775 * 119.99850 * 180.02562 * 10 9 7 13 13 C 1.46494 * 120.00354 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47795 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47540 * 179.97438 * 14 13 12 16 16 C 1.53175 * 109.53913 * 65.44548 * 15 14 13 17 17 C 1.53092 * 109.16179 * 176.85000 * 16 15 14 18 18 O 1.42910 * 109.41107 * 302.39040 * 17 16 15 19 19 C 1.42900 * 114.09727 * 61.16189 * 18 17 16 20 20 C 1.53090 * 109.41229 * 298.83586 * 19 18 17 21 21 H 0.97003 * 120.00253 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.46863 * 59.99949 * 9 7 2 23 23 H 1.08997 * 109.47397 * 299.99938 * 9 7 2 24 24 H 0.97002 * 120.00038 * 359.97438 * 12 10 9 25 25 H 1.09009 * 109.46956 * 59.99811 * 13 12 10 26 26 H 1.09005 * 109.47149 * 300.00230 * 13 12 10 27 27 H 1.09005 * 109.46474 * 59.99873 * 14 13 12 28 28 H 1.09005 * 109.47030 * 300.00389 * 14 13 12 29 29 H 1.08997 * 109.61228 * 305.22843 * 15 14 13 30 30 H 1.09006 * 109.52647 * 296.75300 * 16 15 14 31 31 H 1.08998 * 109.52537 * 56.94192 * 16 15 14 32 32 H 1.08998 * 109.48147 * 182.40843 * 17 16 15 33 33 H 1.08997 * 109.48550 * 62.37144 * 17 16 15 34 34 H 1.09003 * 109.47953 * 178.86010 * 19 18 17 35 35 H 1.08995 * 109.49265 * 58.82602 * 19 18 17 36 36 H 1.09001 * 109.52724 * 297.70937 * 20 19 18 37 37 H 1.09000 * 109.52338 * 177.51272 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4227 -3.4230 0.0010 12 7 1.7811 -4.9153 0.0000 13 6 2.7330 -6.0288 0.0006 14 6 1.9680 -7.3539 0.0005 15 6 2.9623 -8.5168 0.0004 16 6 3.7511 -8.5165 1.3134 17 6 4.6866 -9.7280 1.3379 18 8 3.9192 -10.9239 1.1855 19 6 3.1976 -11.0011 -0.0455 20 6 2.2022 -9.8407 -0.1255 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 0.8274 -5.0925 0.0000 25 1 3.3590 -5.9712 0.8911 26 1 3.3604 -5.9710 -0.8889 27 1 1.3418 -7.4116 -0.8898 28 1 1.3409 -7.4115 0.8902 29 1 3.6502 -8.4100 -0.8383 30 1 4.3386 -7.6011 1.3853 31 1 3.0594 -8.5733 2.1539 32 1 5.2195 -9.7567 2.2883 33 1 5.4040 -9.6500 0.5210 34 1 2.6577 -11.9469 -0.0917 35 1 3.8953 -10.9397 -0.8806 36 1 1.4793 -9.9243 0.6859 37 1 1.6820 -9.8724 -1.0829 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258770782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:39 Heat of formation + Delta-G solvation = -138.257132 kcal Electronic energy + Delta-G solvation = -17005.426788 eV Core-core repulsion = 14166.491589 eV Total energy + Delta-G solvation = -2838.935199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.65717 -40.14696 -37.01054 -35.10693 -34.83904 -32.03846 -31.49446 -30.00774 -26.44641 -25.03150 -24.41678 -22.61773 -21.48268 -20.79340 -18.54011 -17.64828 -17.25481 -16.97258 -16.65001 -16.56354 -16.23049 -15.76940 -15.50319 -14.89892 -14.58325 -14.36004 -14.15701 -13.41701 -13.25292 -13.14655 -12.89975 -12.76234 -12.60551 -12.37104 -12.20339 -12.03451 -11.82434 -11.47635 -11.30075 -11.17295 -10.63375 -10.60594 -10.37663 -9.96106 -8.25889 -6.33397 1.39919 1.42862 1.51558 1.88612 2.33849 2.52781 3.00340 3.09368 3.67394 3.74896 3.89100 4.09413 4.21023 4.23334 4.36894 4.42168 4.51927 4.58058 4.63584 4.81382 4.82658 4.89812 4.93948 5.04831 5.07112 5.15009 5.17878 5.25226 5.27438 5.45821 5.59431 5.73918 6.05700 6.29144 6.71249 6.84226 7.33002 7.51939 8.86134 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.066080 B = 0.003566 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.624642 B = 7848.972645 C = 8121.671938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.054 0.946 9 C 0.007 3.993 10 C 0.515 3.485 11 O -0.588 6.588 12 N -0.728 5.728 13 C 0.118 3.882 14 C -0.111 4.111 15 C -0.085 4.085 16 C -0.155 4.155 17 C 0.059 3.941 18 O -0.406 6.406 19 C 0.055 3.945 20 C -0.145 4.145 21 H 0.268 0.732 22 H 0.043 0.957 23 H 0.042 0.958 24 H 0.411 0.589 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.676 -21.825 -0.217 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.073 0.927 9 C -0.032 4.032 10 C 0.304 3.696 11 O -0.468 6.468 12 N -0.381 5.381 13 C -0.006 4.006 14 C -0.149 4.149 15 C -0.104 4.104 16 C -0.193 4.193 17 C -0.018 4.018 18 O -0.325 6.325 19 C -0.022 4.022 20 C -0.183 4.183 21 H 0.077 0.923 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.247 0.753 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.365 -21.716 -0.080 21.975 hybrid contribution -0.093 1.216 -0.146 1.228 sum 3.272 -20.500 -0.226 20.761 Atomic orbital electron populations 1.70022 1.07144 1.28203 1.51090 1.25803 0.95872 1.02780 0.94428 0.85505 0.78369 0.78255 0.78933 1.19726 1.19797 1.19740 1.21366 0.93701 0.91398 1.51366 0.92734 1.19080 0.94312 0.90985 0.98857 1.21480 0.89811 0.84878 0.73396 1.90504 1.19296 1.85639 1.51365 1.46044 1.11032 1.04931 1.76094 1.21416 0.92343 0.85850 1.00959 1.21744 0.98136 0.91165 1.03839 1.21119 0.96998 0.94320 0.97925 1.22314 0.99646 0.99021 0.98299 1.22654 0.92764 0.83744 1.02605 1.87898 1.64091 1.40460 1.40046 1.22746 0.93912 0.99441 0.86074 1.22206 0.98628 0.93727 1.03707 0.92339 0.93938 0.93971 0.75261 0.92904 0.93154 0.89794 0.90479 0.90639 0.91054 0.91316 0.88274 0.92583 0.87624 0.92556 0.91148 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.51 13.29 21.45 0.28 -54.23 16 2 C 0.01 0.57 5.46 84.66 0.46 1.03 16 3 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 4 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.54 -32.33 8.92 25.60 0.23 -32.11 16 8 H 0.05 3.43 6.75 -2.91 -0.02 3.41 16 9 C 0.01 0.37 5.46 29.10 0.16 0.53 16 10 C 0.52 24.01 7.82 87.66 0.69 24.69 16 11 O -0.59 -31.81 15.46 -3.03 -0.05 -31.86 16 12 N -0.73 -24.38 5.56 -463.06 -2.57 -26.95 16 13 C 0.12 3.25 5.44 86.38 0.47 3.72 16 14 C -0.11 -2.03 4.80 30.59 0.15 -1.89 16 15 C -0.08 -1.38 2.27 -10.68 -0.02 -1.40 16 16 C -0.16 -2.74 5.10 30.68 0.16 -2.59 16 17 C 0.06 0.98 6.84 72.01 0.49 1.48 16 18 O -0.41 -7.79 10.77 -148.98 -1.60 -9.39 16 19 C 0.05 0.76 6.84 72.01 0.49 1.25 16 20 C -0.15 -1.94 5.42 30.68 0.17 -1.78 16 21 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 22 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.41 11.23 8.47 -92.71 -0.79 10.44 16 25 H 0.05 1.57 6.66 -2.38 -0.02 1.56 16 26 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.37 6.75 -2.38 -0.02 1.36 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -71.14 303.10 1.78 -69.35 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.26 Total: 12.46 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 3.44 Total: -7.06 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -2.29 Total: -81.18 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -1.65 Total: -41.25 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -71.14 1.78 -69.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258770782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.905 kcal (2) G-P(sol) polarization free energy of solvation -71.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds