Wall clock time and date at job start Mon Mar 30 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00056 * 2 1 4 4 H 1.48495 * 109.47250 * 270.00175 * 3 2 1 5 5 H 1.48503 * 109.47123 * 29.99797 * 3 2 1 6 6 H 1.48498 * 109.47399 * 149.99932 * 3 2 1 7 7 C 1.37875 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99958 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99949 * 180.02562 * 7 2 1 10 10 H 1.09000 * 110.64562 * 298.28313 * 9 7 2 11 11 C 1.54459 * 110.88112 * 175.02079 * 9 7 2 12 12 O 1.43887 * 105.08302 * 219.77747 * 11 9 7 13 13 C 1.43790 * 107.10252 * 358.29099 * 12 11 9 14 14 H 1.08994 * 110.16439 * 265.87712 * 13 12 11 15 15 C 1.53004 * 110.11143 * 144.26513 * 13 12 11 16 16 C 1.52997 * 109.47468 * 68.25517 * 15 13 12 17 17 H 1.09008 * 109.46192 * 305.02132 * 16 15 13 18 18 C 1.53032 * 109.46450 * 185.05426 * 16 15 13 19 19 C 1.53114 * 109.28141 * 180.80368 * 18 16 15 20 20 C 1.53123 * 109.16198 * 57.65126 * 19 18 16 21 21 C 1.53035 * 109.27774 * 302.35270 * 20 19 18 22 22 N 1.46844 * 109.46174 * 64.99798 * 16 15 13 23 23 O 1.44383 * 106.17267 * 25.08619 * 13 12 11 24 24 H 0.97004 * 119.99770 * 0.02562 * 1 2 3 25 25 H 1.08997 * 110.31852 * 338.67699 * 11 9 7 26 26 H 1.09004 * 110.31862 * 100.77561 * 11 9 7 27 27 H 1.09001 * 109.46916 * 308.25068 * 15 13 12 28 28 H 1.09001 * 109.46565 * 188.25723 * 15 13 12 29 29 H 1.09000 * 109.50025 * 300.74661 * 18 16 15 30 30 H 1.09000 * 109.50523 * 60.82186 * 18 16 15 31 31 H 1.09000 * 109.52528 * 177.55766 * 19 18 16 32 32 H 1.08998 * 109.52620 * 297.74970 * 19 18 16 33 33 H 1.08995 * 109.51026 * 182.40543 * 20 19 18 34 34 H 1.09011 * 109.49940 * 62.28508 * 20 19 18 35 35 H 1.09008 * 109.45841 * 299.15478 * 21 20 19 36 36 H 1.09003 * 109.46290 * 179.19461 * 21 20 19 37 37 H 1.00904 * 110.99961 * 57.66275 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8962 -0.7109 -0.8971 11 6 4.0621 -2.6316 0.1269 12 8 5.1928 -2.5236 1.0102 13 6 5.3335 -1.1333 1.3490 14 1 6.0433 -0.6526 0.6760 15 6 5.8031 -0.9899 2.7981 16 6 7.2392 -1.5029 2.9220 17 1 7.2935 -2.5248 2.5463 18 6 7.6648 -1.4770 4.3917 19 6 9.1090 -1.9722 4.5086 20 6 10.0141 -1.0911 3.6431 21 6 9.5202 -1.1281 2.1951 22 7 8.1349 -0.6445 2.1364 23 8 4.0238 -0.5464 1.1910 24 1 -0.4850 0.8401 -0.0004 25 1 3.3072 -3.2897 0.5572 26 1 4.3760 -3.0035 -0.8485 27 1 5.1518 -1.5716 3.4504 28 1 5.7658 0.0597 3.0898 29 1 7.5977 -0.4578 4.7721 30 1 7.0090 -2.1259 4.9721 31 1 9.4309 -1.9145 5.5484 32 1 9.1691 -3.0047 4.1645 33 1 11.0370 -1.4647 3.6884 34 1 9.9838 -0.0656 4.0117 35 1 9.5637 -2.1517 1.8226 36 1 10.1539 -0.4904 1.5788 37 1 8.0739 0.3157 2.4402 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258774234.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:45 Heat of formation + Delta-G solvation = -103.933282 kcal Electronic energy + Delta-G solvation = -18095.593405 eV Core-core repulsion = 15258.146600 eV Total energy + Delta-G solvation = -2837.446806 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.52800 -38.64336 -34.03137 -33.25900 -32.41174 -31.68335 -29.72722 -27.40814 -24.79435 -23.71370 -22.57005 -21.24090 -20.44042 -20.14444 -17.29170 -16.22667 -15.72024 -15.47718 -15.01260 -14.78290 -14.57011 -14.21446 -13.98134 -13.72787 -13.06634 -12.74501 -12.50150 -12.22074 -12.06493 -11.84655 -11.60268 -11.35818 -11.13745 -11.00380 -10.84888 -10.68402 -10.52690 -10.02043 -9.84979 -9.55208 -8.97871 -8.64747 -8.62081 -8.24542 -6.17540 -4.28027 3.34825 3.40876 3.64662 4.20375 4.45616 4.48310 4.61254 4.68475 4.85517 4.87233 5.08376 5.26867 5.29351 5.42704 5.47595 5.56536 5.66902 5.77066 5.80622 5.84853 5.88627 5.95148 5.98311 6.04636 6.07274 6.25128 6.31435 6.39337 6.51619 6.91876 7.00183 7.07822 7.40991 7.55847 8.12053 8.33208 8.81081 9.44348 10.92519 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040463 B = 0.005877 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.821708 B = 4763.015952 C = 4987.492967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.086 3.914 3 Si 0.869 3.131 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.225 1.225 7 C -0.525 4.525 8 H 0.083 0.917 9 C 0.144 3.856 10 H 0.037 0.963 11 C 0.038 3.962 12 O -0.402 6.402 13 C 0.225 3.775 14 H 0.070 0.930 15 C -0.109 4.109 16 C 0.093 3.907 17 H 0.089 0.911 18 C -0.152 4.152 19 C -0.119 4.119 20 C -0.158 4.158 21 C 0.058 3.942 22 N -0.680 5.680 23 O -0.379 6.379 24 H 0.267 0.733 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.248 -1.316 6.606 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.119 4.119 3 Si 0.695 3.305 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.148 1.148 7 C -0.562 4.562 8 H 0.101 0.899 9 C 0.089 3.911 10 H 0.055 0.945 11 C -0.039 4.039 12 O -0.324 6.324 13 C 0.129 3.871 14 H 0.087 0.913 15 C -0.147 4.147 16 C -0.017 4.017 17 H 0.107 0.893 18 C -0.191 4.191 19 C -0.156 4.156 20 C -0.198 4.198 21 C -0.071 4.071 22 N -0.309 5.309 23 O -0.300 6.300 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 17.970 -1.534 6.207 19.074 hybrid contribution 0.482 1.156 0.792 1.482 sum 18.452 -0.378 6.999 19.738 Atomic orbital electron populations 1.69913 1.06630 1.27630 1.48246 1.25017 0.94725 0.99815 0.92330 0.86988 0.82784 0.82220 0.78462 1.20854 1.21539 1.14793 1.20818 0.86774 0.95240 1.53348 0.89921 1.21714 0.96678 0.87571 0.85164 0.94496 1.23884 0.87328 0.99865 0.92796 1.88706 1.49764 1.26866 1.67050 1.24040 0.88569 0.79409 0.95047 0.91309 1.21710 0.94688 1.01931 0.96347 1.21528 0.91603 0.98330 0.90259 0.89256 1.22281 0.96572 1.01698 0.98593 1.21548 0.95000 0.99579 0.99515 1.22279 0.99544 1.00137 0.97793 1.21994 0.89245 1.01504 0.94400 1.60651 1.06355 1.05990 1.57899 1.89798 1.28502 1.63046 1.48668 0.92322 0.90559 0.91901 0.90309 0.90763 0.92063 0.91222 0.92254 0.91841 0.91753 0.92187 0.90931 0.90928 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.15 13.96 55.43 0.77 -26.38 16 2 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 3 Si 0.87 21.88 27.12 -169.99 -4.61 17.27 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.23 -5.54 5.37 56.52 0.30 -5.23 16 7 C -0.53 -15.03 9.39 -34.44 -0.32 -15.35 16 8 H 0.08 2.50 7.84 -52.48 -0.41 2.09 16 9 C 0.14 3.55 2.61 -27.12 -0.07 3.48 16 10 H 0.04 0.90 7.70 -51.93 -0.40 0.50 16 11 C 0.04 0.81 7.65 37.92 0.29 1.10 16 12 O -0.40 -8.38 10.89 -59.28 -0.65 -9.03 16 13 C 0.22 4.51 3.82 37.16 0.14 4.65 16 14 H 0.07 1.36 7.62 -51.93 -0.40 0.97 16 15 C -0.11 -1.77 4.96 -26.73 -0.13 -1.91 16 16 C 0.09 1.23 2.39 -67.73 -0.16 1.07 16 17 H 0.09 1.33 7.84 -51.92 -0.41 0.92 16 18 C -0.15 -1.67 5.36 -26.66 -0.14 -1.81 16 19 C -0.12 -1.13 6.00 -26.61 -0.16 -1.29 16 20 C -0.16 -1.39 6.08 -26.65 -0.16 -1.56 16 21 C 0.06 0.59 6.55 -3.84 -0.03 0.57 16 22 N -0.68 -8.43 5.87 -106.76 -0.63 -9.05 16 23 O -0.38 -9.23 8.26 -59.28 -0.49 -9.72 16 24 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.08 1.67 7.70 -51.93 -0.40 1.27 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.34 3.88 8.79 -39.29 -0.35 3.54 16 LS Contribution 291.32 15.07 4.39 4.39 Total: -1.00 -30.84 291.32 -8.29 -39.14 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.24 Total: 1.99 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -0.84 Total: -8.60 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.15 Total: -35.43 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -1.14 Total: -18.75 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.61 Total: 17.27 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.84 -8.29 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258774234.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.796 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds