Wall clock time and date at job start Mon Mar 30 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00056 * 2 1 4 4 H 1.48495 * 109.47250 * 270.00175 * 3 2 1 5 5 H 1.48503 * 109.47123 * 29.99797 * 3 2 1 6 6 H 1.48498 * 109.47399 * 149.99932 * 3 2 1 7 7 C 1.37875 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99958 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99949 * 180.02562 * 7 2 1 10 10 H 1.09000 * 110.64562 * 298.28313 * 9 7 2 11 11 C 1.54459 * 110.88112 * 175.02079 * 9 7 2 12 12 O 1.43887 * 105.08302 * 219.77747 * 11 9 7 13 13 C 1.43790 * 107.10252 * 358.29099 * 12 11 9 14 14 H 1.08994 * 110.16439 * 265.87712 * 13 12 11 15 15 C 1.53004 * 110.11143 * 144.26513 * 13 12 11 16 16 C 1.52997 * 109.47468 * 68.25517 * 15 13 12 17 17 H 1.09008 * 109.46192 * 305.02132 * 16 15 13 18 18 C 1.53032 * 109.46450 * 185.05426 * 16 15 13 19 19 C 1.53114 * 109.28141 * 180.80368 * 18 16 15 20 20 C 1.53123 * 109.16198 * 57.65126 * 19 18 16 21 21 C 1.53035 * 109.27774 * 302.35270 * 20 19 18 22 22 N 1.46844 * 109.46174 * 64.99798 * 16 15 13 23 23 O 1.44383 * 106.17267 * 25.08619 * 13 12 11 24 24 H 0.97004 * 119.99770 * 0.02562 * 1 2 3 25 25 H 1.08997 * 110.31852 * 338.67699 * 11 9 7 26 26 H 1.09004 * 110.31862 * 100.77561 * 11 9 7 27 27 H 1.09001 * 109.46916 * 308.25068 * 15 13 12 28 28 H 1.09001 * 109.46565 * 188.25723 * 15 13 12 29 29 H 1.09000 * 109.50025 * 300.74661 * 18 16 15 30 30 H 1.09000 * 109.50523 * 60.82186 * 18 16 15 31 31 H 1.09000 * 109.52528 * 177.55766 * 19 18 16 32 32 H 1.08998 * 109.52620 * 297.74970 * 19 18 16 33 33 H 1.08995 * 109.51026 * 182.40543 * 20 19 18 34 34 H 1.09011 * 109.49940 * 62.28508 * 20 19 18 35 35 H 1.09008 * 109.45841 * 299.15478 * 21 20 19 36 36 H 1.09003 * 109.46290 * 179.19461 * 21 20 19 37 37 H 1.00904 * 110.99961 * 57.66275 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8962 -0.7109 -0.8971 11 6 4.0621 -2.6316 0.1269 12 8 5.1928 -2.5236 1.0102 13 6 5.3335 -1.1333 1.3490 14 1 6.0433 -0.6526 0.6760 15 6 5.8031 -0.9899 2.7981 16 6 7.2392 -1.5029 2.9220 17 1 7.2935 -2.5248 2.5463 18 6 7.6648 -1.4770 4.3917 19 6 9.1090 -1.9722 4.5086 20 6 10.0141 -1.0911 3.6431 21 6 9.5202 -1.1281 2.1951 22 7 8.1349 -0.6445 2.1364 23 8 4.0238 -0.5464 1.1910 24 1 -0.4850 0.8401 -0.0004 25 1 3.3072 -3.2897 0.5572 26 1 4.3760 -3.0035 -0.8485 27 1 5.1518 -1.5716 3.4504 28 1 5.7658 0.0597 3.0898 29 1 7.5977 -0.4578 4.7721 30 1 7.0090 -2.1259 4.9721 31 1 9.4309 -1.9145 5.5484 32 1 9.1691 -3.0047 4.1645 33 1 11.0370 -1.4647 3.6884 34 1 9.9838 -0.0656 4.0117 35 1 9.5637 -2.1517 1.8226 36 1 10.1539 -0.4904 1.5788 37 1 8.0739 0.3157 2.4402 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258774234.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:45 Heat of formation + Delta-G solvation = -125.518693 kcal Electronic energy + Delta-G solvation = -18096.529419 eV Core-core repulsion = 15258.146600 eV Total energy + Delta-G solvation = -2838.382819 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.08986 -39.74152 -35.86006 -34.85190 -34.09248 -32.54397 -31.40872 -28.78881 -26.74433 -24.71471 -23.65911 -22.96928 -21.63955 -21.26791 -19.36332 -17.98057 -17.15005 -16.90429 -16.27127 -16.20859 -15.75701 -15.60825 -15.31512 -14.96744 -14.77272 -14.27128 -13.96643 -13.63059 -13.45054 -13.04418 -12.94680 -12.81387 -12.58914 -12.25683 -12.04852 -11.93835 -11.80057 -11.57192 -11.50152 -11.30322 -10.82745 -10.77328 -10.37784 -9.19057 -8.41005 -6.56795 1.35906 1.38568 1.65929 2.38423 2.75848 2.97817 3.28409 3.38467 3.88069 3.93950 4.03139 4.05606 4.14529 4.19419 4.30153 4.35094 4.40491 4.50041 4.62545 4.64533 4.81655 4.89007 4.94779 4.97349 5.09358 5.10152 5.13532 5.18292 5.21957 5.25960 5.41878 5.56042 6.08528 6.14435 6.33574 6.53334 6.55563 7.19527 8.72574 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040463 B = 0.005877 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.821708 B = 4763.015952 C = 4987.492967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.032 3.968 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.216 1.216 7 C -0.537 4.537 8 H 0.049 0.951 9 C 0.143 3.857 10 H 0.048 0.952 11 C 0.043 3.957 12 O -0.402 6.402 13 C 0.220 3.780 14 H 0.078 0.922 15 C -0.104 4.104 16 C 0.103 3.897 17 H 0.072 0.928 18 C -0.147 4.147 19 C -0.118 4.118 20 C -0.152 4.152 21 C 0.058 3.942 22 N -0.693 5.693 23 O -0.400 6.400 24 H 0.271 0.729 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.952 -0.386 7.135 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.169 4.169 3 Si 0.757 3.243 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.138 1.138 7 C -0.574 4.574 8 H 0.067 0.933 9 C 0.087 3.913 10 H 0.065 0.935 11 C -0.034 4.034 12 O -0.324 6.324 13 C 0.126 3.874 14 H 0.095 0.905 15 C -0.142 4.142 16 C -0.007 4.007 17 H 0.090 0.910 18 C -0.187 4.187 19 C -0.155 4.155 20 C -0.191 4.191 21 C -0.071 4.071 22 N -0.323 5.323 23 O -0.322 6.322 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 20.695 -0.621 6.736 21.773 hybrid contribution -0.359 0.782 0.627 1.065 sum 20.336 0.161 7.363 21.629 Atomic orbital electron populations 1.70031 1.08321 1.28761 1.49970 1.25907 0.95468 1.03576 0.91941 0.85980 0.81610 0.77575 0.79095 1.19532 1.21420 1.13805 1.21046 0.89223 0.94071 1.53042 0.93308 1.21591 0.94299 0.89699 0.85689 0.93465 1.23804 0.87383 0.97951 0.94227 1.88707 1.49229 1.27442 1.67023 1.24374 0.86814 0.78639 0.97606 0.90454 1.21719 0.96435 1.02539 0.93546 1.21303 0.90078 0.97288 0.92002 0.91006 1.22216 0.97631 1.02178 0.96654 1.21550 0.93991 0.99462 1.00511 1.22218 1.00045 1.00362 0.96464 1.22037 0.88177 1.01236 0.95667 1.60608 1.07483 1.06251 1.57991 1.89711 1.30696 1.63585 1.48247 0.91998 0.91658 0.89092 0.91285 0.89849 0.91406 0.91494 0.90959 0.92200 0.90272 0.91643 0.91726 0.89699 0.83760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.24 13.96 21.45 0.30 -57.94 16 2 C 0.03 1.88 5.47 84.65 0.46 2.34 16 3 Si 0.93 45.00 27.12 68.60 1.86 46.86 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.22 -9.97 5.37 99.48 0.53 -9.44 16 7 C -0.54 -31.26 9.39 25.60 0.24 -31.02 16 8 H 0.05 3.08 7.84 -2.91 -0.02 3.05 16 9 C 0.14 6.95 2.61 30.34 0.08 7.03 16 10 H 0.05 2.21 7.70 -2.39 -0.02 2.19 16 11 C 0.04 1.81 7.65 72.48 0.55 2.37 16 12 O -0.40 -16.27 10.89 -125.98 -1.37 -17.64 16 13 C 0.22 8.50 3.82 71.98 0.28 8.77 16 14 H 0.08 2.88 7.62 -2.39 -0.02 2.87 16 15 C -0.10 -3.25 4.96 30.59 0.15 -3.09 16 16 C 0.10 2.57 2.39 44.94 0.11 2.68 16 17 H 0.07 2.05 7.84 -2.38 -0.02 2.03 16 18 C -0.15 -2.91 5.36 30.64 0.16 -2.75 16 19 C -0.12 -1.91 6.00 30.67 0.18 -1.73 16 20 C -0.15 -2.20 6.08 30.65 0.19 -2.01 16 21 C 0.06 1.03 6.55 86.33 0.57 1.59 16 22 N -0.69 -15.55 5.87 -491.69 -2.89 -18.44 16 23 O -0.40 -19.04 8.26 -125.98 -1.04 -20.08 16 24 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 25 H 0.07 2.88 7.70 -2.39 -0.02 2.86 16 26 H 0.09 3.32 8.14 -2.38 -0.02 3.30 16 27 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.34 6.98 8.79 -89.69 -0.79 6.19 16 Total: -1.00 -66.01 291.32 -0.09 -66.10 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.08 Total: 16.95 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 2.97 Total: -15.82 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -2.59 Total: -76.37 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -2.41 Total: -37.72 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.86 Total: 46.86 kcal Total: -66.01 -0.09 -66.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258774234.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.419 kcal (2) G-P(sol) polarization free energy of solvation -66.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds