Wall clock time and date at job start Mon Mar 30 2020 03:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00059 * 2 1 4 4 H 1.48509 * 109.46812 * 269.99670 * 3 2 1 5 5 H 1.48493 * 109.47296 * 29.99199 * 3 2 1 6 6 H 1.48498 * 109.47198 * 150.00010 * 3 2 1 7 7 C 1.37881 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99663 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.28527 * 302.11543 * 9 7 2 11 11 C 1.54445 * 110.31931 * 179.97438 * 9 7 2 12 12 O 1.44839 * 102.89927 * 219.30048 * 11 9 7 13 13 C 1.44390 * 103.23035 * 36.61489 * 12 11 9 14 14 H 1.09000 * 110.11293 * 80.01406 * 13 12 11 15 15 C 1.52995 * 110.11131 * 201.59876 * 13 12 11 16 16 C 1.52999 * 109.47312 * 293.54641 * 15 13 12 17 17 H 1.08996 * 109.45370 * 54.96994 * 16 15 13 18 18 C 1.53040 * 109.46428 * 174.94824 * 16 15 13 19 19 C 1.53119 * 109.28089 * 179.19281 * 18 16 15 20 20 C 1.53124 * 109.15841 * 302.34776 * 19 18 16 21 21 C 1.53032 * 109.28012 * 57.65244 * 20 19 18 22 22 N 1.46846 * 109.52260 * 300.82015 * 21 20 19 23 23 O 1.43788 * 106.16820 * 320.77672 * 13 12 11 24 24 H 0.97003 * 119.99769 * 0.02562 * 1 2 3 25 25 H 1.08999 * 110.73279 * 100.94723 * 11 9 7 26 26 H 1.09003 * 110.73267 * 337.65392 * 11 9 7 27 27 H 1.09001 * 109.47462 * 173.54120 * 15 13 12 28 28 H 1.09008 * 109.47197 * 53.54463 * 15 13 12 29 29 H 1.09004 * 109.50602 * 59.25040 * 18 16 15 30 30 H 1.08998 * 109.50366 * 299.13560 * 18 16 15 31 31 H 1.08998 * 109.52394 * 182.44064 * 19 18 16 32 32 H 1.08999 * 109.51878 * 62.24548 * 19 18 16 33 33 H 1.08999 * 109.49853 * 297.70868 * 20 19 18 34 34 H 1.08994 * 109.53481 * 177.61659 * 20 19 18 35 35 H 1.09001 * 109.46314 * 180.80749 * 21 20 19 36 36 H 1.08997 * 109.46418 * 60.83870 * 21 20 19 37 37 H 1.00904 * 111.00089 * 185.84316 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5910 -2.5544 0.8663 11 6 2.2371 -3.6878 0.0005 12 8 1.6027 -4.6342 -0.8937 13 6 1.0145 -3.7892 -1.9060 14 1 1.7731 -3.4838 -2.6265 15 6 -0.1181 -4.5315 -2.6179 16 6 0.4607 -5.7044 -3.4118 17 1 1.0464 -6.3390 -2.7467 18 6 -0.6814 -6.5210 -4.0209 19 6 -0.0971 -7.6817 -4.8308 20 6 0.8351 -7.1227 -5.9094 21 6 1.9331 -6.2888 -5.2455 22 7 1.3232 -5.1915 -4.4838 23 8 0.4952 -2.6397 -1.2157 24 1 -0.4850 0.8401 -0.0004 25 1 2.3345 -4.1084 1.0014 26 1 3.2092 -3.3828 -0.3871 27 1 -0.6288 -3.8494 -3.2978 28 1 -0.8269 -4.9070 -1.8798 29 1 -1.2758 -5.8835 -4.6754 30 1 -1.3126 -6.9146 -3.2241 31 1 -0.9057 -8.2405 -5.3020 32 1 0.4652 -8.3406 -4.1692 33 1 0.2645 -6.4947 -6.5935 34 1 1.2874 -7.9458 -6.4624 35 1 2.5903 -5.8775 -6.0118 36 1 2.5120 -6.9207 -4.5719 37 1 2.0286 -4.5715 -4.1149 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258774237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:47 Heat of formation + Delta-G solvation = -128.734123 kcal Electronic energy + Delta-G solvation = -18037.369041 eV Core-core repulsion = 15198.846790 eV Total energy + Delta-G solvation = -2838.522251 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.05108 -39.52176 -35.78846 -34.77895 -34.03959 -32.78457 -31.09872 -28.67797 -26.64485 -24.96899 -23.72019 -22.98001 -21.90577 -20.55833 -18.88874 -18.05166 -17.23126 -17.19548 -16.72458 -16.40069 -15.64446 -15.25561 -15.06765 -14.69452 -14.31484 -14.22026 -13.97492 -13.88949 -13.24058 -13.03576 -12.91145 -12.80987 -12.72216 -12.37862 -12.26111 -11.96814 -11.65636 -11.40583 -11.33793 -11.24785 -10.95603 -10.71834 -10.07056 -9.39529 -8.21371 -6.45879 1.40874 1.42197 1.53126 2.37404 2.84290 3.01352 3.21416 3.38811 3.84053 3.94792 4.06373 4.13507 4.16304 4.21161 4.31476 4.39339 4.44444 4.53963 4.62312 4.68707 4.74913 4.87001 4.91280 5.01735 5.09994 5.10523 5.21734 5.24772 5.31210 5.37783 5.49812 5.62354 6.02912 6.13308 6.36636 6.46664 6.78237 7.32203 8.86719 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041617 B = 0.005303 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.644143 B = 5278.990558 C = 5360.604551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.025 3.975 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.172 3.828 10 H 0.020 0.980 11 C 0.032 3.968 12 O -0.399 6.399 13 C 0.221 3.779 14 H 0.057 0.943 15 C -0.102 4.102 16 C 0.103 3.897 17 H 0.034 0.966 18 C -0.111 4.111 19 C -0.118 4.118 20 C -0.114 4.114 21 C 0.054 3.946 22 N -0.696 5.696 23 O -0.399 6.399 24 H 0.265 0.735 25 H 0.109 0.891 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.027 0.973 37 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.583 -13.008 -8.973 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.791 3.209 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.606 4.606 8 H 0.089 0.911 9 C 0.117 3.883 10 H 0.038 0.962 11 C -0.045 4.045 12 O -0.320 6.320 13 C 0.126 3.874 14 H 0.074 0.926 15 C -0.140 4.140 16 C -0.007 4.007 17 H 0.052 0.948 18 C -0.149 4.149 19 C -0.156 4.156 20 C -0.152 4.152 21 C -0.075 4.075 22 N -0.329 5.329 23 O -0.321 6.321 24 H 0.074 0.926 25 H 0.127 0.873 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.045 0.955 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.731 -12.946 -9.461 16.128 hybrid contribution 0.998 0.937 0.955 1.669 sum 2.729 -12.009 -8.506 14.967 Atomic orbital electron populations 1.70175 1.07953 1.27885 1.48001 1.25999 0.95605 1.03408 0.92775 0.85432 0.78875 0.78109 0.78447 1.20041 1.20528 1.18194 1.21649 0.93369 0.91369 1.54223 0.91064 1.21013 0.89083 0.94093 0.84123 0.96182 1.24323 0.96641 0.88410 0.95094 1.89231 1.72008 1.31130 1.39619 1.24286 0.92967 0.81032 0.89138 0.92586 1.21722 0.96534 0.97414 0.98317 1.21293 0.94923 0.93725 0.90789 0.94784 1.21624 0.96513 0.96946 0.99789 1.21577 0.99553 0.96863 0.97567 1.21596 0.96725 0.99135 0.97767 1.22020 0.96351 0.92104 0.96994 1.60445 1.25531 1.19694 1.27199 1.89109 1.60421 1.45965 1.36620 0.92645 0.87284 0.91030 0.90188 0.91054 0.91468 0.91114 0.90210 0.92260 0.91615 0.89800 0.89865 0.95488 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.78 13.05 21.45 0.28 -54.50 16 2 C 0.02 1.40 5.43 84.66 0.46 1.86 16 3 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.57 -31.80 8.77 25.60 0.22 -31.58 16 8 H 0.07 3.75 7.54 -2.91 -0.02 3.73 16 9 C 0.17 9.20 3.53 30.34 0.11 9.31 16 10 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 11 C 0.03 1.34 7.35 72.47 0.53 1.88 16 12 O -0.40 -16.74 11.08 -125.98 -1.40 -18.13 16 13 C 0.22 9.49 3.75 71.98 0.27 9.76 16 14 H 0.06 2.36 6.48 -2.39 -0.02 2.34 16 15 C -0.10 -3.66 5.02 30.59 0.15 -3.50 16 16 C 0.10 2.98 2.46 44.94 0.11 3.10 16 17 H 0.03 1.07 7.77 -2.39 -0.02 1.05 16 18 C -0.11 -2.64 5.37 30.65 0.16 -2.47 16 19 C -0.12 -2.25 6.00 30.68 0.18 -2.06 16 20 C -0.11 -2.11 6.09 30.65 0.19 -1.92 16 21 C 0.05 1.18 6.55 86.32 0.57 1.74 16 22 N -0.70 -19.21 6.50 -491.70 -3.20 -22.40 16 23 O -0.40 -21.77 10.63 -125.98 -1.34 -23.11 16 24 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 25 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 26 H 0.07 2.89 7.68 -2.39 -0.02 2.87 16 27 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 28 H 0.07 2.59 8.14 -2.38 -0.02 2.58 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.34 9.90 6.93 -89.69 -0.62 9.28 16 Total: -1.00 -65.10 294.85 -0.25 -65.35 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.42 Total: 21.28 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 2.96 Total: -13.89 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -2.92 Total: -76.91 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -2.73 Total: -41.24 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -65.10 -0.25 -65.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258774237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.387 kcal (2) G-P(sol) polarization free energy of solvation -65.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds