Wall clock time and date at job start Mon Mar 30 2020 03:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99856 * 2 1 4 4 H 1.48505 * 109.46736 * 270.00062 * 3 2 1 5 5 H 1.48497 * 109.47221 * 29.99458 * 3 2 1 6 6 H 1.48500 * 109.47380 * 150.00133 * 3 2 1 7 7 C 1.37883 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99790 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99768 * 180.02562 * 7 2 1 10 10 H 1.09005 * 110.28488 * 302.11634 * 9 7 2 11 11 C 1.54455 * 110.31745 * 180.02562 * 9 7 2 12 12 O 1.44834 * 102.89383 * 219.20157 * 11 9 7 13 13 C 1.44381 * 103.23442 * 36.61046 * 12 11 9 14 14 H 1.08998 * 110.11802 * 80.02120 * 13 12 11 15 15 C 1.53012 * 110.11455 * 201.59933 * 13 12 11 16 16 C 1.52997 * 109.46814 * 293.70927 * 15 13 12 17 17 H 1.09001 * 109.45522 * 306.73787 * 16 15 13 18 18 C 1.53039 * 109.45912 * 186.77242 * 16 15 13 19 19 C 1.53120 * 109.31158 * 180.78427 * 18 16 15 20 20 C 1.53200 * 109.11564 * 57.63290 * 19 18 16 21 21 C 1.53035 * 109.30086 * 302.36914 * 20 19 18 22 22 N 1.46844 * 109.46593 * 66.71851 * 16 15 13 23 23 O 1.43785 * 106.17198 * 320.77591 * 13 12 11 24 24 H 0.97001 * 120.00449 * 0.02562 * 1 2 3 25 25 H 1.09000 * 110.72898 * 100.84538 * 11 9 7 26 26 H 1.09000 * 110.72432 * 337.54792 * 11 9 7 27 27 H 1.08991 * 109.47080 * 173.70320 * 15 13 12 28 28 H 1.08998 * 109.46553 * 53.70432 * 15 13 12 29 29 H 1.09005 * 109.50204 * 300.74609 * 18 16 15 30 30 H 1.09000 * 109.50638 * 60.82191 * 18 16 15 31 31 H 1.08999 * 109.52155 * 177.57850 * 19 18 16 32 32 H 1.08998 * 109.52077 * 297.76927 * 19 18 16 33 33 H 1.08999 * 109.49052 * 182.42321 * 20 19 18 34 34 H 1.08995 * 109.52699 * 62.33968 * 20 19 18 35 35 H 1.08993 * 109.46367 * 299.16483 * 21 20 19 36 36 H 1.08999 * 109.45930 * 179.19410 * 21 20 19 37 37 H 1.00901 * 111.00078 * 305.85341 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8898 -0.6506 -0.8648 11 6 4.0480 -2.6424 0.0010 12 8 5.1859 -2.5657 0.8938 13 6 4.7494 -1.6333 1.9061 14 1 4.1066 -2.1373 2.6279 15 6 5.9596 -1.0232 2.6164 16 6 6.6892 -2.1115 3.4065 17 1 5.9820 -2.6208 4.0611 18 6 7.7961 -1.4741 4.2495 19 6 8.5366 -2.5681 5.0237 20 6 9.0994 -3.5911 4.0319 21 6 7.9548 -4.1672 3.1953 22 7 7.2789 -3.0809 2.4744 23 8 4.0128 -0.6091 1.2164 24 1 -0.4851 0.8400 -0.0004 25 1 4.3622 -2.9373 -1.0002 26 1 3.2983 -3.3314 0.3899 27 1 5.6248 -0.2417 3.2983 28 1 6.6368 -0.5950 1.8774 29 1 8.4962 -0.9527 3.5967 30 1 7.3566 -0.7655 4.9516 31 1 9.3532 -2.1229 5.5921 32 1 7.8451 -3.0638 5.7050 33 1 9.5910 -4.3956 4.5789 34 1 9.8204 -3.1038 3.3756 35 1 7.2416 -4.6669 3.8507 36 1 8.3542 -4.8850 2.4788 37 1 6.5817 -3.4452 1.8425 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258774240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:49 Heat of formation + Delta-G solvation = -101.461109 kcal Electronic energy + Delta-G solvation = -18204.749347 eV Core-core repulsion = 15367.409743 eV Total energy + Delta-G solvation = -2837.339604 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.60248 -38.34970 -34.16696 -33.24553 -32.42498 -31.71555 -29.71313 -27.41280 -24.89652 -23.61615 -22.64488 -20.86291 -20.79117 -19.62808 -17.09383 -16.69502 -15.83399 -15.69994 -15.37679 -14.57610 -14.33003 -14.16327 -13.62504 -13.32330 -13.12189 -12.77595 -12.61899 -12.58598 -11.97178 -11.66992 -11.53891 -11.46914 -10.95542 -10.81238 -10.80329 -10.52622 -10.34473 -10.17806 -9.93984 -9.55503 -9.33238 -8.66326 -8.39410 -8.18822 -6.19946 -4.31127 3.33287 3.39297 3.63477 4.13107 4.45663 4.47786 4.63325 4.87370 4.93316 4.99184 5.19731 5.32113 5.38808 5.48340 5.54115 5.64010 5.75082 5.80738 5.83384 5.87178 5.90532 5.95080 5.99806 6.07363 6.13594 6.18686 6.29503 6.32800 6.45585 6.73934 7.03393 7.29112 7.53343 7.82704 8.04451 8.32214 8.78445 9.43241 10.90301 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044632 B = 0.005947 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.195220 B = 4707.040886 C = 5074.622594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.088 3.912 3 Si 0.872 3.128 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.228 1.228 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.146 3.854 10 H 0.050 0.950 11 C 0.033 3.967 12 O -0.394 6.394 13 C 0.227 3.773 14 H 0.056 0.944 15 C -0.115 4.115 16 C 0.094 3.906 17 H 0.034 0.966 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.117 4.117 21 C 0.057 3.943 22 N -0.685 5.685 23 O -0.385 6.385 24 H 0.267 0.733 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.023 0.977 36 H 0.070 0.930 37 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.263 -5.109 7.471 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.118 4.118 3 Si 0.698 3.302 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.152 1.152 7 C -0.578 4.578 8 H 0.096 0.904 9 C 0.091 3.909 10 H 0.068 0.932 11 C -0.043 4.043 12 O -0.315 6.315 13 C 0.131 3.869 14 H 0.073 0.927 15 C -0.153 4.153 16 C -0.016 4.016 17 H 0.052 0.948 18 C -0.150 4.150 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.072 4.072 22 N -0.325 5.325 23 O -0.308 6.308 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.088 0.912 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 15.829 -4.557 7.418 18.065 hybrid contribution -0.804 0.206 0.292 0.880 sum 15.025 -4.351 7.710 17.439 Atomic orbital electron populations 1.69921 1.06682 1.27643 1.48259 1.25012 0.94658 0.99857 0.92239 0.86905 0.82517 0.82258 0.78496 1.20764 1.21503 1.15151 1.21155 0.87991 0.95058 1.53641 0.90372 1.21463 0.95474 0.89344 0.84646 0.93194 1.24227 0.86961 0.99150 0.93973 1.89049 1.38652 1.64167 1.39624 1.24080 0.90456 0.82853 0.89504 0.92694 1.21836 0.96162 0.97724 0.99581 1.21344 0.94168 0.93245 0.92838 0.94805 1.21619 0.97716 0.97516 0.98133 1.21580 0.99613 0.96955 0.97633 1.21602 0.97958 0.98346 0.97601 1.21870 0.95803 0.93167 0.96390 1.60438 1.36173 1.16304 1.19550 1.89203 1.69820 1.35042 1.36688 0.92351 0.89234 0.91428 0.89851 0.89896 0.91104 0.91793 0.92095 0.92498 0.92184 0.91284 0.95857 0.91185 0.81224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 2 C 0.09 2.52 5.47 -17.82 -0.10 2.43 16 3 Si 0.87 21.80 27.04 -169.99 -4.60 17.20 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.23 -5.64 5.54 56.52 0.31 -5.33 16 7 C -0.54 -15.12 9.36 -34.44 -0.32 -15.44 16 8 H 0.08 2.31 7.79 -52.49 -0.41 1.90 16 9 C 0.15 3.49 2.97 -27.12 -0.08 3.41 16 10 H 0.05 1.19 7.49 -51.93 -0.39 0.81 16 11 C 0.03 0.66 7.35 37.92 0.28 0.94 16 12 O -0.39 -7.48 8.53 -59.28 -0.51 -7.99 16 13 C 0.23 4.44 3.87 37.16 0.14 4.58 16 14 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 15 C -0.12 -1.88 5.09 -26.73 -0.14 -2.02 16 16 C 0.09 1.33 2.48 -67.72 -0.17 1.16 16 17 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 18 C -0.11 -1.33 5.37 -26.65 -0.14 -1.47 16 19 C -0.12 -1.24 6.01 -26.57 -0.16 -1.40 16 20 C -0.12 -1.22 6.09 -26.61 -0.16 -1.38 16 21 C 0.06 0.68 6.55 -3.83 -0.03 0.66 16 22 N -0.68 -9.87 6.44 -106.76 -0.69 -10.56 16 23 O -0.39 -9.16 8.28 -59.28 -0.49 -9.65 16 24 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 26 H 0.07 1.35 7.68 -51.93 -0.40 0.95 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.36 5.70 5.59 -39.29 -0.22 5.48 16 LS Contribution 287.30 15.07 4.33 4.33 Total: -1.00 -30.02 287.30 -8.19 -38.21 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.14 Total: 3.13 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -0.87 Total: -8.53 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.09 Total: -36.70 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -1.00 Total: -17.64 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.60 Total: 17.20 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.02 -8.19 -38.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258774240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.253 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds