Wall clock time and date at job start Mon Mar 30 2020 03:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99856 * 2 1 4 4 H 1.48505 * 109.46736 * 270.00062 * 3 2 1 5 5 H 1.48497 * 109.47221 * 29.99458 * 3 2 1 6 6 H 1.48500 * 109.47380 * 150.00133 * 3 2 1 7 7 C 1.37883 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99790 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99768 * 180.02562 * 7 2 1 10 10 H 1.09005 * 110.28488 * 302.11634 * 9 7 2 11 11 C 1.54455 * 110.31745 * 180.02562 * 9 7 2 12 12 O 1.44834 * 102.89383 * 219.20157 * 11 9 7 13 13 C 1.44381 * 103.23442 * 36.61046 * 12 11 9 14 14 H 1.08998 * 110.11802 * 80.02120 * 13 12 11 15 15 C 1.53012 * 110.11455 * 201.59933 * 13 12 11 16 16 C 1.52997 * 109.46814 * 293.70927 * 15 13 12 17 17 H 1.09001 * 109.45522 * 306.73787 * 16 15 13 18 18 C 1.53039 * 109.45912 * 186.77242 * 16 15 13 19 19 C 1.53120 * 109.31158 * 180.78427 * 18 16 15 20 20 C 1.53200 * 109.11564 * 57.63290 * 19 18 16 21 21 C 1.53035 * 109.30086 * 302.36914 * 20 19 18 22 22 N 1.46844 * 109.46593 * 66.71851 * 16 15 13 23 23 O 1.43785 * 106.17198 * 320.77591 * 13 12 11 24 24 H 0.97001 * 120.00449 * 0.02562 * 1 2 3 25 25 H 1.09000 * 110.72898 * 100.84538 * 11 9 7 26 26 H 1.09000 * 110.72432 * 337.54792 * 11 9 7 27 27 H 1.08991 * 109.47080 * 173.70320 * 15 13 12 28 28 H 1.08998 * 109.46553 * 53.70432 * 15 13 12 29 29 H 1.09005 * 109.50204 * 300.74609 * 18 16 15 30 30 H 1.09000 * 109.50638 * 60.82191 * 18 16 15 31 31 H 1.08999 * 109.52155 * 177.57850 * 19 18 16 32 32 H 1.08998 * 109.52077 * 297.76927 * 19 18 16 33 33 H 1.08999 * 109.49052 * 182.42321 * 20 19 18 34 34 H 1.08995 * 109.52699 * 62.33968 * 20 19 18 35 35 H 1.08993 * 109.46367 * 299.16483 * 21 20 19 36 36 H 1.08999 * 109.45930 * 179.19410 * 21 20 19 37 37 H 1.00901 * 111.00078 * 305.85341 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8898 -0.6506 -0.8648 11 6 4.0480 -2.6424 0.0010 12 8 5.1859 -2.5657 0.8938 13 6 4.7494 -1.6333 1.9061 14 1 4.1066 -2.1373 2.6279 15 6 5.9596 -1.0232 2.6164 16 6 6.6892 -2.1115 3.4065 17 1 5.9820 -2.6208 4.0611 18 6 7.7961 -1.4741 4.2495 19 6 8.5366 -2.5681 5.0237 20 6 9.0994 -3.5911 4.0319 21 6 7.9548 -4.1672 3.1953 22 7 7.2789 -3.0809 2.4744 23 8 4.0128 -0.6091 1.2164 24 1 -0.4851 0.8400 -0.0004 25 1 4.3622 -2.9373 -1.0002 26 1 3.2983 -3.3314 0.3899 27 1 5.6248 -0.2417 3.2983 28 1 6.6368 -0.5950 1.8774 29 1 8.4962 -0.9527 3.5967 30 1 7.3566 -0.7655 4.9516 31 1 9.3532 -2.1229 5.5921 32 1 7.8451 -3.0638 5.7050 33 1 9.5910 -4.3956 4.5789 34 1 9.8204 -3.1038 3.3756 35 1 7.2416 -4.6669 3.8507 36 1 8.3542 -4.8850 2.4788 37 1 6.5817 -3.4452 1.8425 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258774240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:48 Heat of formation + Delta-G solvation = -122.041092 kcal Electronic energy + Delta-G solvation = -18205.641762 eV Core-core repulsion = 15367.409743 eV Total energy + Delta-G solvation = -2838.232019 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.17607 -39.46186 -35.91153 -34.84073 -34.10787 -32.69911 -31.37975 -28.78993 -26.77445 -24.70202 -23.80869 -22.71952 -22.05845 -20.57272 -19.17845 -18.14908 -17.45618 -17.11953 -16.81265 -16.20651 -15.65034 -15.23245 -14.90795 -14.73432 -14.61765 -14.39617 -14.06144 -13.92180 -13.32640 -13.11376 -13.00438 -12.78196 -12.63273 -12.44826 -11.99469 -11.81037 -11.65106 -11.59103 -11.28366 -11.14784 -11.01945 -10.80691 -10.24050 -9.26938 -8.40873 -6.56141 1.35329 1.37511 1.65227 2.37742 2.69921 2.85308 3.24914 3.44291 3.89012 3.94695 4.03379 4.12154 4.13087 4.23665 4.25761 4.39176 4.42931 4.57244 4.57698 4.67571 4.74275 4.85472 4.88342 4.98631 5.06092 5.13985 5.18355 5.19166 5.26040 5.32545 5.50475 5.55220 6.01874 6.24846 6.35206 6.56894 6.67158 7.21911 8.72904 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044632 B = 0.005947 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.195220 B = 4707.040886 C = 5074.622594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.033 3.967 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.223 1.223 7 C -0.548 4.548 8 H 0.046 0.954 9 C 0.143 3.857 10 H 0.055 0.945 11 C 0.040 3.960 12 O -0.381 6.381 13 C 0.221 3.779 14 H 0.051 0.949 15 C -0.106 4.106 16 C 0.097 3.903 17 H 0.030 0.970 18 C -0.110 4.110 19 C -0.119 4.119 20 C -0.114 4.114 21 C 0.053 3.947 22 N -0.696 5.696 23 O -0.405 6.405 24 H 0.270 0.730 25 H 0.119 0.881 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.023 0.977 36 H 0.077 0.923 37 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.680 -4.925 8.257 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.168 4.168 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.146 1.146 7 C -0.585 4.585 8 H 0.064 0.936 9 C 0.087 3.913 10 H 0.073 0.927 11 C -0.037 4.037 12 O -0.302 6.302 13 C 0.126 3.874 14 H 0.068 0.932 15 C -0.144 4.144 16 C -0.013 4.013 17 H 0.048 0.952 18 C -0.147 4.147 19 C -0.156 4.156 20 C -0.152 4.152 21 C -0.076 4.076 22 N -0.334 5.334 23 O -0.328 6.328 24 H 0.079 0.921 25 H 0.137 0.863 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.095 0.905 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 18.272 -4.390 8.213 20.508 hybrid contribution -1.570 0.039 0.067 1.572 sum 16.701 -4.351 8.281 19.142 Atomic orbital electron populations 1.70038 1.08312 1.28656 1.50253 1.25869 0.95350 1.03479 0.92054 0.85914 0.81200 0.77963 0.78987 1.19598 1.21415 1.14580 1.21425 0.90408 0.93808 1.52836 0.93563 1.21370 0.93020 0.91955 0.84971 0.92719 1.24156 0.87188 0.96628 0.95702 1.89098 1.37894 1.63946 1.39254 1.24333 0.91489 0.82373 0.89255 0.93162 1.21811 0.94628 0.98524 0.99452 1.21344 0.94788 0.92633 0.92581 0.95200 1.21612 0.96960 0.98126 0.98047 1.21589 1.00045 0.96450 0.97520 1.21602 0.97201 0.98954 0.97458 1.21995 0.96154 0.92756 0.96682 1.60493 1.35754 1.17214 1.19955 1.89116 1.70470 1.36410 1.36768 0.92112 0.86321 0.91938 0.88998 0.90557 0.91512 0.90721 0.90317 0.92276 0.90176 0.91725 0.95885 0.90472 0.82481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.77 13.96 21.45 0.30 -57.47 16 2 C 0.03 1.93 5.47 84.66 0.46 2.39 16 3 Si 0.94 45.07 27.04 68.60 1.86 46.93 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.22 -10.46 5.54 99.48 0.55 -9.91 16 7 C -0.55 -31.04 9.36 25.60 0.24 -30.81 16 8 H 0.05 2.84 7.79 -2.91 -0.02 2.81 16 9 C 0.14 6.72 2.97 30.34 0.09 6.81 16 10 H 0.06 2.54 7.49 -2.38 -0.02 2.52 16 11 C 0.04 1.54 7.35 72.48 0.53 2.07 16 12 O -0.38 -13.96 8.53 -125.98 -1.07 -15.03 16 13 C 0.22 8.41 3.87 71.99 0.28 8.69 16 14 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 15 C -0.11 -3.30 5.09 30.60 0.16 -3.14 16 16 C 0.10 2.55 2.48 44.94 0.11 2.66 16 17 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 18 C -0.11 -2.32 5.37 30.65 0.16 -2.15 16 19 C -0.12 -2.08 6.01 30.70 0.18 -1.90 16 20 C -0.11 -2.04 6.09 30.67 0.19 -1.86 16 21 C 0.05 1.16 6.55 86.32 0.57 1.72 16 22 N -0.70 -18.85 6.44 -491.69 -3.17 -22.02 16 23 O -0.41 -18.84 8.28 -125.98 -1.04 -19.89 16 24 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 25 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 26 H 0.06 2.48 7.68 -2.39 -0.02 2.46 16 27 H 0.09 2.67 8.14 -2.39 -0.02 2.66 16 28 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.35 10.56 5.59 -89.69 -0.50 10.06 16 Total: -1.00 -64.14 287.30 0.22 -63.92 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.38 Total: 19.07 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 2.97 Total: -15.52 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -2.87 Total: -79.49 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -2.12 Total: -34.92 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.86 Total: 46.93 kcal Total: -64.14 0.22 -63.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258774240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.118 kcal (2) G-P(sol) polarization free energy of solvation -64.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds