Wall clock time and date at job start Mon Mar 30 2020 03:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00629 * 2 1 4 4 H 1.48498 * 109.47453 * 240.00022 * 3 2 1 5 5 H 1.48506 * 109.46770 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47265 * 119.99612 * 3 2 1 7 7 C 1.37879 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00514 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99887 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.64889 * 300.70427 * 9 7 2 11 11 C 1.54458 * 110.72908 * 177.53821 * 9 7 2 12 12 O 1.43887 * 105.08238 * 219.67616 * 11 9 7 13 13 C 1.43788 * 107.10607 * 358.28868 * 12 11 9 14 14 H 1.08997 * 110.11578 * 265.84492 * 13 12 11 15 15 C 1.53003 * 110.11148 * 144.26318 * 13 12 11 16 16 C 1.52996 * 109.47072 * 66.45496 * 15 13 12 17 17 H 1.09003 * 109.46294 * 54.99849 * 16 15 13 18 18 C 1.53032 * 109.46371 * 174.97826 * 16 15 13 19 19 C 1.53120 * 109.28338 * 179.19463 * 18 16 15 20 20 C 1.53122 * 109.16211 * 302.35166 * 19 18 16 21 21 C 1.53034 * 109.27767 * 57.64730 * 20 19 18 22 22 N 1.46847 * 109.51690 * 300.81354 * 21 20 19 23 23 O 1.44832 * 110.72604 * 63.86776 * 9 7 2 24 24 H 0.97007 * 119.99300 * 0.02562 * 1 2 3 25 25 H 1.09004 * 110.31795 * 338.58156 * 11 9 7 26 26 H 1.09002 * 110.31355 * 100.77493 * 11 9 7 27 27 H 1.08997 * 109.47121 * 186.45891 * 15 13 12 28 28 H 1.09000 * 109.46813 * 306.45892 * 15 13 12 29 29 H 1.08996 * 109.50455 * 299.14068 * 18 16 15 30 30 H 1.09007 * 109.50411 * 59.21831 * 18 16 15 31 31 H 1.09008 * 109.51901 * 62.25142 * 19 18 16 32 32 H 1.08995 * 109.52827 * 182.44002 * 19 18 16 33 33 H 1.08992 * 109.50211 * 177.59148 * 20 19 18 34 34 H 1.08999 * 109.49630 * 297.70738 * 20 19 18 35 35 H 1.08992 * 109.46397 * 60.84324 * 21 20 19 36 36 H 1.09003 * 109.45847 * 180.82162 * 21 20 19 37 37 H 1.00897 * 111.01317 * 297.66402 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6080 -2.5718 0.8767 11 6 2.2273 -3.6943 -0.0632 12 8 1.6032 -4.6417 -0.9482 13 6 0.3406 -4.0805 -1.3462 14 1 -0.4533 -4.4426 -0.6931 15 6 0.0353 -4.4500 -2.7993 16 6 -0.1859 -5.9601 -2.9058 17 1 -0.9658 -6.2631 -2.2071 18 6 -0.6137 -6.3134 -4.3320 19 6 -0.8144 -7.8276 -4.4392 20 6 0.4855 -8.5360 -4.0477 21 6 0.8813 -8.1181 -2.6298 22 7 1.0624 -6.6617 -2.5800 23 8 0.4774 -2.6444 -1.2164 24 1 -0.4849 0.8402 -0.0004 25 1 3.1891 -3.3766 -0.4661 26 1 2.3564 -4.1299 0.9276 27 1 -0.8635 -3.9271 -3.1260 28 1 0.8744 -4.1602 -3.4318 29 1 -1.5483 -5.8048 -4.5682 30 1 0.1595 -5.9979 -5.0326 31 1 -1.6147 -8.1374 -3.7669 32 1 -1.0771 -8.0887 -5.4643 33 1 0.3360 -9.6151 -4.0809 34 1 1.2762 -8.2559 -4.7438 35 1 0.0964 -8.4108 -1.9325 36 1 1.8143 -8.6095 -2.3535 37 1 1.8112 -6.3692 -3.1896 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258774243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:50 Heat of formation + Delta-G solvation = -105.161616 kcal Electronic energy + Delta-G solvation = -18074.256450 eV Core-core repulsion = 15236.756380 eV Total energy + Delta-G solvation = -2837.500070 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.24301 -38.34851 -33.68250 -33.05756 -32.29382 -31.49859 -29.32449 -27.18683 -24.60483 -23.41664 -22.37016 -21.19284 -20.30536 -20.17495 -16.84844 -16.02976 -15.47167 -15.05956 -14.81996 -14.55683 -14.46831 -14.18476 -13.85863 -13.60488 -13.03983 -12.29713 -12.25549 -12.00232 -11.81430 -11.62136 -11.29824 -11.08149 -10.99822 -10.88116 -10.81045 -10.59339 -10.49051 -10.35553 -9.91199 -9.27348 -8.79802 -8.55758 -8.27518 -7.96804 -6.08627 -4.22500 3.30391 3.34572 3.37243 4.36913 4.41124 4.63315 4.78914 4.84920 4.98541 5.02604 5.20828 5.36241 5.40366 5.51199 5.64674 5.71027 5.84488 5.87541 5.94839 5.99604 6.04516 6.11743 6.15931 6.25709 6.29175 6.34180 6.46399 6.65883 6.69977 7.23884 7.35343 7.41695 7.69443 7.81107 8.17310 8.49023 8.86380 9.48701 10.99660 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.052202 B = 0.005215 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.246292 B = 5368.195451 C = 5634.929734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.077 3.923 3 Si 0.898 3.102 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.067 0.933 9 C 0.181 3.819 10 H 0.036 0.964 11 C 0.022 3.978 12 O -0.372 6.372 13 C 0.226 3.774 14 H 0.046 0.954 15 C -0.108 4.108 16 C 0.095 3.905 17 H 0.077 0.923 18 C -0.153 4.153 19 C -0.118 4.118 20 C -0.160 4.160 21 C 0.058 3.942 22 N -0.659 5.659 23 O -0.362 6.362 24 H 0.264 0.736 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.869 -13.602 -6.768 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.129 4.129 3 Si 0.725 3.275 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.570 4.570 8 H 0.085 0.915 9 C 0.125 3.875 10 H 0.054 0.946 11 C -0.055 4.055 12 O -0.293 6.293 13 C 0.129 3.871 14 H 0.063 0.937 15 C -0.146 4.146 16 C -0.015 4.015 17 H 0.095 0.905 18 C -0.193 4.193 19 C -0.155 4.155 20 C -0.199 4.199 21 C -0.072 4.072 22 N -0.287 5.287 23 O -0.282 6.282 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.136 -13.468 -6.273 14.901 hybrid contribution 0.238 0.755 -0.868 1.175 sum -0.898 -12.713 -7.141 14.609 Atomic orbital electron populations 1.70024 1.06151 1.26998 1.46880 1.25088 0.94841 0.99533 0.93422 0.86576 0.79626 0.82473 0.78830 1.19949 1.21098 1.19941 1.20899 0.92759 0.89422 1.53968 0.91501 1.21256 0.87808 0.93520 0.84887 0.94619 1.24062 0.98367 0.90339 0.92740 1.88923 1.32905 1.42243 1.65240 1.23916 0.87183 0.82369 0.93594 0.93690 1.21701 1.02468 0.93871 0.96580 1.21482 0.92492 0.93713 0.93832 0.90478 1.22311 1.02105 0.95925 0.98940 1.21541 0.97618 0.95426 1.00963 1.22312 0.97915 1.00230 0.99447 1.22006 1.01406 0.89328 0.94426 1.60548 1.06253 1.03530 1.58418 1.89833 1.74543 1.17731 1.46131 0.92675 0.91512 0.92658 0.90248 0.91041 0.91491 0.91995 0.92031 0.92424 0.91997 0.92237 0.91354 0.91066 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.76 13.05 55.43 0.72 -25.03 16 2 C 0.08 2.20 5.43 -17.82 -0.10 2.10 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -15.11 8.80 -34.44 -0.30 -15.42 16 8 H 0.07 1.82 7.57 -52.49 -0.40 1.42 16 9 C 0.18 4.82 3.19 -27.12 -0.09 4.73 16 10 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 11 C 0.02 0.50 7.65 37.92 0.29 0.79 16 12 O -0.37 -8.07 9.70 -59.25 -0.57 -8.65 16 13 C 0.23 4.87 3.89 37.16 0.14 5.02 16 14 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 15 C -0.11 -1.88 5.05 -26.73 -0.13 -2.02 16 16 C 0.10 1.35 2.42 -67.72 -0.16 1.18 16 17 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 18 C -0.15 -1.78 5.36 -26.65 -0.14 -1.93 16 19 C -0.12 -1.20 6.00 -26.61 -0.16 -1.35 16 20 C -0.16 -1.57 6.08 -26.65 -0.16 -1.73 16 21 C 0.06 0.67 6.55 -3.84 -0.03 0.65 16 22 N -0.66 -9.38 4.92 -106.76 -0.53 -9.90 16 23 O -0.36 -9.72 10.95 -59.25 -0.65 -10.37 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 25 H 0.07 1.50 7.68 -51.93 -0.40 1.10 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.34 4.81 8.79 -39.29 -0.35 4.46 16 LS Contribution 296.24 15.07 4.46 4.46 Total: -1.00 -30.50 296.24 -8.62 -39.11 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.20 Total: 2.04 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -0.84 Total: -7.98 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.20 Total: -34.94 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -1.22 Total: -19.02 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.50 -8.62 -39.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258774243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.048 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds