Wall clock time and date at job start Mon Mar 30 2020 03:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00629 * 2 1 4 4 H 1.48498 * 109.47453 * 240.00022 * 3 2 1 5 5 H 1.48506 * 109.46770 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47265 * 119.99612 * 3 2 1 7 7 C 1.37879 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00514 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99887 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.64889 * 300.70427 * 9 7 2 11 11 C 1.54458 * 110.72908 * 177.53821 * 9 7 2 12 12 O 1.43887 * 105.08238 * 219.67616 * 11 9 7 13 13 C 1.43788 * 107.10607 * 358.28868 * 12 11 9 14 14 H 1.08997 * 110.11578 * 265.84492 * 13 12 11 15 15 C 1.53003 * 110.11148 * 144.26318 * 13 12 11 16 16 C 1.52996 * 109.47072 * 66.45496 * 15 13 12 17 17 H 1.09003 * 109.46294 * 54.99849 * 16 15 13 18 18 C 1.53032 * 109.46371 * 174.97826 * 16 15 13 19 19 C 1.53120 * 109.28338 * 179.19463 * 18 16 15 20 20 C 1.53122 * 109.16211 * 302.35166 * 19 18 16 21 21 C 1.53034 * 109.27767 * 57.64730 * 20 19 18 22 22 N 1.46847 * 109.51690 * 300.81354 * 21 20 19 23 23 O 1.44832 * 110.72604 * 63.86776 * 9 7 2 24 24 H 0.97007 * 119.99300 * 0.02562 * 1 2 3 25 25 H 1.09004 * 110.31795 * 338.58156 * 11 9 7 26 26 H 1.09002 * 110.31355 * 100.77493 * 11 9 7 27 27 H 1.08997 * 109.47121 * 186.45891 * 15 13 12 28 28 H 1.09000 * 109.46813 * 306.45892 * 15 13 12 29 29 H 1.08996 * 109.50455 * 299.14068 * 18 16 15 30 30 H 1.09007 * 109.50411 * 59.21831 * 18 16 15 31 31 H 1.09008 * 109.51901 * 62.25142 * 19 18 16 32 32 H 1.08995 * 109.52827 * 182.44002 * 19 18 16 33 33 H 1.08992 * 109.50211 * 177.59148 * 20 19 18 34 34 H 1.08999 * 109.49630 * 297.70738 * 20 19 18 35 35 H 1.08992 * 109.46397 * 60.84324 * 21 20 19 36 36 H 1.09003 * 109.45847 * 180.82162 * 21 20 19 37 37 H 1.00897 * 111.01317 * 297.66402 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6080 -2.5718 0.8767 11 6 2.2273 -3.6943 -0.0632 12 8 1.6032 -4.6417 -0.9482 13 6 0.3406 -4.0805 -1.3462 14 1 -0.4533 -4.4426 -0.6931 15 6 0.0353 -4.4500 -2.7993 16 6 -0.1859 -5.9601 -2.9058 17 1 -0.9658 -6.2631 -2.2071 18 6 -0.6137 -6.3134 -4.3320 19 6 -0.8144 -7.8276 -4.4392 20 6 0.4855 -8.5360 -4.0477 21 6 0.8813 -8.1181 -2.6298 22 7 1.0624 -6.6617 -2.5800 23 8 0.4774 -2.6444 -1.2164 24 1 -0.4849 0.8402 -0.0004 25 1 3.1891 -3.3766 -0.4661 26 1 2.3564 -4.1299 0.9276 27 1 -0.8635 -3.9271 -3.1260 28 1 0.8744 -4.1602 -3.4318 29 1 -1.5483 -5.8048 -4.5682 30 1 0.1595 -5.9979 -5.0326 31 1 -1.6147 -8.1374 -3.7669 32 1 -1.0771 -8.0887 -5.4643 33 1 0.3360 -9.6151 -4.0809 34 1 1.2762 -8.2559 -4.7438 35 1 0.0964 -8.4108 -1.9325 36 1 1.8143 -8.6095 -2.3535 37 1 1.8112 -6.3692 -3.1896 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258774243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:50 Heat of formation + Delta-G solvation = -125.523213 kcal Electronic energy + Delta-G solvation = -18075.139395 eV Core-core repulsion = 15236.756380 eV Total energy + Delta-G solvation = -2838.383015 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.84387 -39.63129 -35.61948 -34.71531 -33.97129 -32.46160 -31.05923 -28.69763 -26.59796 -24.50784 -23.59622 -23.06158 -21.74211 -21.20455 -18.93303 -17.80574 -16.85297 -16.73869 -16.30252 -16.05420 -15.81542 -15.54562 -15.26083 -14.91846 -14.33654 -14.16995 -13.76411 -13.43239 -13.08311 -13.00448 -12.80863 -12.67659 -12.62046 -12.39370 -12.12994 -12.00644 -11.85188 -11.52677 -11.32423 -11.22471 -10.86091 -10.53516 -10.21385 -9.00410 -8.23480 -6.45961 1.41554 1.45163 1.53014 2.37945 2.92373 3.12014 3.40271 3.44193 3.89846 3.99957 4.08133 4.14740 4.23410 4.27418 4.39074 4.46260 4.49291 4.58886 4.65206 4.73534 4.78819 4.95102 4.97634 5.03512 5.12315 5.15918 5.19364 5.22142 5.31135 5.41090 5.48620 5.63380 6.06656 6.30769 6.51696 6.62899 6.75209 7.30380 8.85796 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.052202 B = 0.005215 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.246292 B = 5368.195451 C = 5634.929734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.557 4.557 8 H 0.073 0.927 9 C 0.172 3.828 10 H 0.008 0.992 11 C 0.032 3.968 12 O -0.366 6.366 13 C 0.221 3.779 14 H 0.043 0.957 15 C -0.099 4.099 16 C 0.104 3.896 17 H 0.072 0.928 18 C -0.147 4.147 19 C -0.115 4.115 20 C -0.152 4.152 21 C 0.059 3.941 22 N -0.679 5.679 23 O -0.394 6.394 24 H 0.266 0.734 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.173 -14.375 -7.690 16.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.180 4.180 3 Si 0.795 3.205 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.594 4.594 8 H 0.092 0.908 9 C 0.117 3.883 10 H 0.026 0.974 11 C -0.045 4.045 12 O -0.286 6.286 13 C 0.126 3.874 14 H 0.060 0.940 15 C -0.137 4.137 16 C -0.007 4.007 17 H 0.090 0.910 18 C -0.187 4.187 19 C -0.153 4.153 20 C -0.192 4.192 21 C -0.071 4.071 22 N -0.309 5.309 23 O -0.316 6.316 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.433 -14.270 -7.193 15.986 hybrid contribution -0.007 0.927 -0.550 1.078 sum -0.440 -13.344 -7.743 15.434 Atomic orbital electron populations 1.70162 1.07932 1.28046 1.47971 1.26037 0.95713 1.03518 0.92713 0.85419 0.78275 0.77427 0.79358 1.19370 1.20627 1.18473 1.21316 0.93356 0.90573 1.54126 0.90842 1.21192 0.88186 0.94900 0.84052 0.97434 1.23947 0.97398 0.89100 0.94048 1.88916 1.32871 1.41727 1.65115 1.24202 0.86951 0.80044 0.96236 0.93995 1.21679 1.02223 0.96534 0.93309 1.21335 0.92563 0.91200 0.95572 0.90967 1.22226 1.02226 0.97384 0.96822 1.21540 0.97842 0.93956 1.01962 1.22234 0.97727 1.01195 0.98021 1.22035 1.01725 0.87645 0.95661 1.60517 1.06172 1.05256 1.58915 1.89763 1.74924 1.21007 1.45866 0.92560 0.91147 0.90591 0.89963 0.91663 0.91028 0.91939 0.91854 0.90926 0.90302 0.92075 0.91701 0.90439 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.93 13.05 21.45 0.28 -54.65 16 2 C 0.02 1.30 5.43 84.66 0.46 1.76 16 3 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.56 -31.89 8.80 25.60 0.23 -31.66 16 8 H 0.07 3.98 7.57 -2.91 -0.02 3.96 16 9 C 0.17 9.40 3.19 30.34 0.10 9.50 16 10 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 11 C 0.03 1.45 7.65 72.48 0.55 2.00 16 12 O -0.37 -15.74 9.70 -126.02 -1.22 -16.97 16 13 C 0.22 9.67 3.89 71.98 0.28 9.95 16 14 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 15 C -0.10 -3.44 5.05 30.59 0.15 -3.29 16 16 C 0.10 2.83 2.42 44.93 0.11 2.94 16 17 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 18 C -0.15 -3.15 5.36 30.64 0.16 -2.99 16 19 C -0.12 -2.03 6.00 30.68 0.18 -1.85 16 20 C -0.15 -2.59 6.08 30.65 0.19 -2.41 16 21 C 0.06 1.25 6.55 86.32 0.57 1.81 16 22 N -0.68 -18.54 4.92 -491.69 -2.42 -20.95 16 23 O -0.39 -21.73 10.95 -126.02 -1.38 -23.11 16 24 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 25 H 0.07 3.12 7.68 -2.38 -0.02 3.10 16 26 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.34 9.21 8.79 -89.70 -0.79 8.42 16 Total: -1.00 -65.45 296.24 0.52 -64.93 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.25 Total: 19.17 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 2.98 Total: -14.23 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -2.14 Total: -75.60 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -2.60 Total: -40.08 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -65.45 0.52 -64.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258774243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.589 kcal (2) G-P(sol) polarization free energy of solvation -65.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds