Wall clock time and date at job start Mon Mar 30 2020 03:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.64587 * 303.16168 * 9 7 2 11 11 C 1.54445 * 110.73002 * 179.97438 * 9 7 2 12 12 O 1.43895 * 105.08247 * 219.85014 * 11 9 7 13 13 C 1.43779 * 107.10377 * 358.29554 * 12 11 9 14 14 H 1.09005 * 110.11189 * 265.90567 * 13 12 11 15 15 C 1.52999 * 110.11602 * 144.32567 * 13 12 11 16 16 C 1.53004 * 109.47241 * 66.44930 * 15 13 12 17 17 N 1.46891 * 109.47075 * 180.02562 * 16 15 13 18 18 C 1.48532 * 111.00023 * 52.60800 * 17 16 15 19 19 C 1.54943 * 103.22839 * 159.72136 * 18 17 16 20 20 C 1.54596 * 102.91708 * 322.58191 * 19 18 17 21 21 C 1.47905 * 110.99720 * 169.99802 * 17 16 15 22 22 O 1.44386 * 106.17314 * 25.08143 * 13 12 11 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09003 * 110.31919 * 338.75250 * 11 9 7 25 25 H 1.09002 * 110.31753 * 100.94778 * 11 9 7 26 26 H 1.08992 * 109.47120 * 186.44973 * 15 13 12 27 27 H 1.09000 * 109.46814 * 306.45083 * 15 13 12 28 28 H 1.09005 * 109.47039 * 300.00391 * 16 15 13 29 29 H 1.09006 * 109.46952 * 59.99884 * 16 15 13 30 30 H 1.09005 * 110.66393 * 278.14770 * 18 17 16 31 31 H 1.08995 * 110.66844 * 41.28227 * 18 17 16 32 32 H 1.09002 * 110.72098 * 204.22894 * 19 18 17 33 33 H 1.08995 * 110.72588 * 80.94274 * 19 18 17 34 34 H 1.09006 * 110.30959 * 263.04284 * 20 19 18 35 35 H 1.09000 * 110.31006 * 140.87872 * 20 19 18 36 36 H 1.08994 * 109.92065 * 333.51104 * 21 17 16 37 37 H 1.09010 * 109.91450 * 94.60783 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5754 -2.5529 0.8542 11 6 2.2288 -3.6948 0.0005 12 8 1.6401 -4.6599 -0.8898 13 6 0.3948 -4.1070 -1.3490 14 1 -0.4246 -4.4556 -0.7203 15 6 0.1468 -4.5066 -2.8050 16 6 -0.0712 -6.0187 -2.8889 17 7 -0.3086 -6.4023 -4.2868 18 6 0.7668 -5.8844 -5.1709 19 6 0.6581 -6.7857 -6.4266 20 6 0.3155 -8.1700 -5.8298 21 6 -0.2864 -7.8728 -4.4439 22 8 0.5275 -2.6733 -1.2419 23 1 -0.4850 -0.8401 -0.0004 24 1 3.2059 -3.3847 -0.3699 25 1 2.3181 -4.1107 1.0041 26 1 -0.7380 -3.9907 -3.1776 27 1 1.0104 -4.2299 -3.4097 28 1 0.8138 -6.5346 -2.5161 29 1 -0.9348 -6.2954 -2.2840 30 1 0.5835 -4.8414 -5.4291 31 1 1.7421 -5.9993 -4.6981 32 1 1.6081 -6.8200 -6.9600 33 1 -0.1411 -6.4395 -7.0818 34 1 1.2183 -8.7725 -5.7288 35 1 -0.4139 -8.6824 -6.4571 36 1 0.3328 -8.3201 -3.6664 37 1 -1.3006 -8.2680 -4.3838 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258808712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:34 Heat of formation + Delta-G solvation = -101.146361 kcal Electronic energy + Delta-G solvation = -17750.034436 eV Core-core repulsion = 14912.708481 eV Total energy + Delta-G solvation = -2837.325956 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.44607 -38.75293 -34.26211 -33.69531 -32.61101 -30.20188 -28.95999 -27.97811 -24.45465 -23.89578 -21.89379 -21.38070 -20.83869 -19.99407 -17.24751 -16.61568 -16.11914 -15.98120 -14.99884 -14.61040 -14.52254 -13.89008 -13.80957 -13.68969 -13.04236 -12.81844 -12.54178 -12.23674 -11.89946 -11.49442 -11.44850 -11.30158 -11.18252 -10.93035 -10.81863 -10.79395 -10.65512 -10.32886 -10.08189 -9.35421 -8.93057 -8.69149 -8.44057 -8.39793 -6.52127 -4.32584 3.38382 3.41383 3.59807 3.94017 4.38656 4.49147 4.54665 4.61944 4.80391 4.94157 5.22894 5.26166 5.35279 5.42817 5.48509 5.62960 5.63999 5.67214 5.73676 5.80236 5.90564 5.91851 5.98682 6.02014 6.03717 6.10943 6.24273 6.37871 6.50699 6.84396 6.91012 6.99404 7.06395 7.86624 8.09209 8.26111 8.68534 9.49680 10.88652 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.042371 B = 0.004798 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.675693 B = 5833.929667 C = 6059.187075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.033 3.967 3 Si 1.074 2.926 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.061 0.939 9 C 0.160 3.840 10 H 0.034 0.966 11 C 0.034 3.966 12 O -0.405 6.405 13 C 0.222 3.778 14 H 0.054 0.946 15 C -0.113 4.113 16 C 0.053 3.947 17 N -0.518 5.518 18 C 0.031 3.969 19 C -0.124 4.124 20 C -0.131 4.131 21 C 0.034 3.966 22 O -0.373 6.373 23 H 0.277 0.723 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.734 -13.290 -8.042 15.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.176 4.176 3 Si 0.901 3.099 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.645 4.645 8 H 0.080 0.920 9 C 0.106 3.894 10 H 0.052 0.948 11 C -0.042 4.042 12 O -0.327 6.327 13 C 0.125 3.875 14 H 0.071 0.929 15 C -0.151 4.151 16 C -0.075 4.075 17 N -0.243 5.243 18 C -0.096 4.096 19 C -0.162 4.162 20 C -0.169 4.169 21 C -0.094 4.094 22 O -0.294 6.294 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.014 -11.477 -8.370 14.205 hybrid contribution 0.938 -2.087 0.532 2.349 sum 0.952 -13.564 -7.837 15.695 Atomic orbital electron populations 1.70709 1.06957 1.31567 1.42598 1.25994 0.96473 1.02985 0.92125 0.83490 0.74924 0.74803 0.76728 1.20506 1.21140 1.21140 1.21798 0.94070 0.90183 1.58418 0.92038 1.21510 0.88980 0.95099 0.83858 0.94840 1.23970 0.98747 0.89159 0.92369 1.88706 1.36387 1.43060 1.64541 1.23978 0.86793 0.82632 0.94065 0.92895 1.21688 1.03272 0.94746 0.95372 1.22184 1.00483 0.95906 0.88886 1.64809 1.44029 1.08337 1.07110 1.23275 0.93481 0.99941 0.92933 1.22492 1.01643 0.94695 0.97411 1.22393 1.00618 0.97657 0.96207 1.22869 1.00945 0.89002 0.96569 1.89755 1.76988 1.18045 1.44585 0.91198 0.90823 0.92054 0.89713 0.90760 0.93839 0.90757 0.89694 0.93456 0.91191 0.90790 0.91680 0.91159 0.93812 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.92 13.62 55.43 0.75 -26.16 16 2 C 0.03 0.95 5.45 -17.82 -0.10 0.85 16 3 Si 1.07 24.80 29.90 -169.99 -5.08 19.71 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.61 -17.24 8.80 -34.44 -0.30 -17.54 16 8 H 0.06 1.69 7.55 -52.48 -0.40 1.29 16 9 C 0.16 4.19 2.70 -27.12 -0.07 4.12 16 10 H 0.03 0.91 7.91 -51.93 -0.41 0.50 16 11 C 0.03 0.76 7.65 37.92 0.29 1.05 16 12 O -0.40 -8.75 10.90 -59.28 -0.65 -9.40 16 13 C 0.22 4.70 3.89 37.16 0.14 4.85 16 14 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 15 C -0.11 -2.02 5.00 -26.73 -0.13 -2.15 16 16 C 0.05 0.81 4.94 -3.83 -0.02 0.79 16 17 N -0.52 -7.09 5.40 -230.45 -1.24 -8.33 16 18 C 0.03 0.40 5.10 -1.90 -0.01 0.39 16 19 C -0.12 -1.26 7.06 -24.87 -0.18 -1.43 16 20 C -0.13 -1.24 6.93 -25.37 -0.18 -1.41 16 21 C 0.03 0.39 6.69 -2.75 -0.02 0.37 16 22 O -0.37 -9.80 10.52 -59.28 -0.62 -10.42 16 23 H 0.28 8.52 6.74 -40.82 -0.28 8.25 16 24 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.07 1.37 6.79 -51.93 -0.35 1.02 16 28 H 0.04 0.68 7.57 -51.93 -0.39 0.29 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.13 7.66 -51.93 -0.40 0.73 16 31 H 0.05 0.64 8.00 -51.93 -0.42 0.22 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.04 0.49 7.57 -51.93 -0.39 0.10 16 37 H 0.08 0.81 8.14 -51.92 -0.42 0.38 16 LS Contribution 296.60 15.07 4.47 4.47 Total: -1.00 -31.05 296.60 -8.98 -40.02 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.03 Total: 0.24 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -0.57 Total: -10.12 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: -0.49 Total: -34.50 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -1.27 Total: -19.82 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.71 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.05 -8.98 -40.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258808712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.125 kcal (2) G-P(sol) polarization free energy of solvation -31.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds