Wall clock time and date at job start Mon Mar 30 2020 03:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.64587 * 303.16168 * 9 7 2 11 11 C 1.54445 * 110.73002 * 179.97438 * 9 7 2 12 12 O 1.43895 * 105.08247 * 219.85014 * 11 9 7 13 13 C 1.43779 * 107.10377 * 358.29554 * 12 11 9 14 14 H 1.09005 * 110.11189 * 265.90567 * 13 12 11 15 15 C 1.52999 * 110.11602 * 144.32567 * 13 12 11 16 16 C 1.53004 * 109.47241 * 66.44930 * 15 13 12 17 17 N 1.46891 * 109.47075 * 180.02562 * 16 15 13 18 18 C 1.48532 * 111.00023 * 52.60800 * 17 16 15 19 19 C 1.54943 * 103.22839 * 159.72136 * 18 17 16 20 20 C 1.54596 * 102.91708 * 322.58191 * 19 18 17 21 21 C 1.47905 * 110.99720 * 169.99802 * 17 16 15 22 22 O 1.44386 * 106.17314 * 25.08143 * 13 12 11 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09003 * 110.31919 * 338.75250 * 11 9 7 25 25 H 1.09002 * 110.31753 * 100.94778 * 11 9 7 26 26 H 1.08992 * 109.47120 * 186.44973 * 15 13 12 27 27 H 1.09000 * 109.46814 * 306.45083 * 15 13 12 28 28 H 1.09005 * 109.47039 * 300.00391 * 16 15 13 29 29 H 1.09006 * 109.46952 * 59.99884 * 16 15 13 30 30 H 1.09005 * 110.66393 * 278.14770 * 18 17 16 31 31 H 1.08995 * 110.66844 * 41.28227 * 18 17 16 32 32 H 1.09002 * 110.72098 * 204.22894 * 19 18 17 33 33 H 1.08995 * 110.72588 * 80.94274 * 19 18 17 34 34 H 1.09006 * 110.30959 * 263.04284 * 20 19 18 35 35 H 1.09000 * 110.31006 * 140.87872 * 20 19 18 36 36 H 1.08994 * 109.92065 * 333.51104 * 21 17 16 37 37 H 1.09010 * 109.91450 * 94.60783 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5754 -2.5529 0.8542 11 6 2.2288 -3.6948 0.0005 12 8 1.6401 -4.6599 -0.8898 13 6 0.3948 -4.1070 -1.3490 14 1 -0.4246 -4.4556 -0.7203 15 6 0.1468 -4.5066 -2.8050 16 6 -0.0712 -6.0187 -2.8889 17 7 -0.3086 -6.4023 -4.2868 18 6 0.7668 -5.8844 -5.1709 19 6 0.6581 -6.7857 -6.4266 20 6 0.3155 -8.1700 -5.8298 21 6 -0.2864 -7.8728 -4.4439 22 8 0.5275 -2.6733 -1.2419 23 1 -0.4850 -0.8401 -0.0004 24 1 3.2059 -3.3847 -0.3699 25 1 2.3181 -4.1107 1.0041 26 1 -0.7380 -3.9907 -3.1776 27 1 1.0104 -4.2299 -3.4097 28 1 0.8138 -6.5346 -2.5161 29 1 -0.9348 -6.2954 -2.2840 30 1 0.5835 -4.8414 -5.4291 31 1 1.7421 -5.9993 -4.6981 32 1 1.6081 -6.8200 -6.9600 33 1 -0.1411 -6.4395 -7.0818 34 1 1.2183 -8.7725 -5.7288 35 1 -0.4139 -8.6824 -6.4571 36 1 0.3328 -8.3201 -3.6664 37 1 -1.3006 -8.2680 -4.3838 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258808712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:34 Heat of formation + Delta-G solvation = -122.509352 kcal Electronic energy + Delta-G solvation = -17750.960805 eV Core-core repulsion = 14912.708481 eV Total energy + Delta-G solvation = -2838.252324 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18509 -39.86096 -36.16630 -35.17203 -34.49178 -31.65890 -30.06677 -29.49300 -26.44016 -25.31225 -23.64832 -22.91142 -21.73048 -21.26778 -19.31449 -18.36942 -17.48757 -17.04241 -16.56096 -16.31151 -16.00883 -15.65126 -15.25571 -15.06955 -14.64996 -14.23344 -13.90773 -13.66397 -13.42611 -13.22230 -12.75601 -12.61931 -12.43366 -12.32325 -12.25689 -12.06286 -11.92936 -11.82316 -11.43325 -11.30749 -10.82555 -10.70354 -10.50061 -9.47015 -8.78681 -6.60227 1.53132 1.61218 1.81179 2.49990 2.66683 2.77011 3.06718 3.40893 3.71151 3.73984 3.85337 3.94956 4.03882 4.09829 4.13097 4.20773 4.32284 4.36386 4.47943 4.55614 4.63162 4.70557 4.78064 4.89368 4.95295 4.98321 5.00346 5.03324 5.14992 5.18429 5.29904 5.76058 5.88355 5.96367 5.97850 6.23588 6.40408 7.31699 8.61604 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.042371 B = 0.004798 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.675693 B = 5833.929667 C = 6059.187075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.018 4.018 3 Si 1.123 2.877 4 H -0.282 1.282 5 H -0.260 1.260 6 H -0.272 1.272 7 C -0.626 4.626 8 H 0.066 0.934 9 C 0.150 3.850 10 H 0.017 0.983 11 C 0.043 3.957 12 O -0.402 6.402 13 C 0.217 3.783 14 H 0.065 0.935 15 C -0.102 4.102 16 C 0.065 3.935 17 N -0.529 5.529 18 C 0.025 3.975 19 C -0.119 4.119 20 C -0.126 4.126 21 C 0.030 3.970 22 O -0.404 6.404 23 H 0.261 0.739 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 -14.288 -8.791 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.220 4.220 3 Si 0.942 3.058 4 H -0.207 1.207 5 H -0.185 1.185 6 H -0.197 1.197 7 C -0.663 4.663 8 H 0.084 0.916 9 C 0.095 3.905 10 H 0.034 0.966 11 C -0.034 4.034 12 O -0.324 6.324 13 C 0.121 3.879 14 H 0.083 0.917 15 C -0.140 4.140 16 C -0.063 4.063 17 N -0.253 5.253 18 C -0.102 4.102 19 C -0.157 4.157 20 C -0.164 4.164 21 C -0.098 4.098 22 O -0.325 6.325 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.840 -12.517 -9.120 15.510 hybrid contribution 0.657 -1.860 0.755 2.112 sum 1.497 -14.377 -8.365 16.701 Atomic orbital electron populations 1.70846 1.08062 1.30570 1.45230 1.27579 0.96482 1.06994 0.90899 0.82893 0.74140 0.70496 0.78260 1.20717 1.18474 1.19680 1.22209 0.94632 0.91447 1.57963 0.91564 1.21485 0.89472 0.96135 0.83375 0.96566 1.23892 0.97601 0.87945 0.93942 1.88693 1.36532 1.42610 1.64537 1.24308 0.86894 0.80356 0.96349 0.91748 1.21596 1.02619 0.96918 0.92825 1.22017 1.00540 0.93429 0.90304 1.64816 1.44336 1.10206 1.05990 1.23314 0.92727 1.00053 0.94156 1.22490 1.02642 0.94384 0.96196 1.22404 1.01457 0.97387 0.95123 1.22986 1.01759 0.87216 0.97828 1.89680 1.77311 1.21231 1.44305 0.92925 0.90755 0.89336 0.90038 0.91723 0.94433 0.89935 0.90884 0.94420 0.89703 0.90478 0.90621 0.89484 0.93840 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.63 13.62 21.45 0.29 -56.34 16 2 C -0.02 -1.02 5.45 84.65 0.46 -0.56 16 3 Si 1.12 49.39 29.90 68.60 2.05 51.44 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.63 -35.68 8.80 25.60 0.23 -35.45 16 8 H 0.07 3.61 7.55 -2.91 -0.02 3.59 16 9 C 0.15 7.97 2.70 30.34 0.08 8.05 16 10 H 0.02 0.92 7.91 -2.39 -0.02 0.90 16 11 C 0.04 1.87 7.65 72.47 0.55 2.42 16 12 O -0.40 -17.05 10.90 -125.98 -1.37 -18.42 16 13 C 0.22 9.20 3.89 71.98 0.28 9.48 16 14 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 15 C -0.10 -3.63 5.00 30.60 0.15 -3.48 16 16 C 0.07 1.92 4.94 86.31 0.43 2.34 16 17 N -0.53 -13.81 5.40 -883.00 -4.76 -18.58 16 18 C 0.03 0.62 5.10 86.65 0.44 1.07 16 19 C -0.12 -2.16 7.06 31.80 0.22 -1.94 16 20 C -0.13 -2.03 6.93 31.47 0.22 -1.81 16 21 C 0.03 0.61 6.69 86.44 0.58 1.18 16 22 O -0.40 -21.64 10.52 -125.98 -1.33 -22.97 16 23 H 0.26 16.63 6.74 -92.71 -0.62 16.01 16 24 H 0.07 3.24 7.66 -2.39 -0.02 3.22 16 25 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 26 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 27 H 0.06 2.42 6.79 -2.39 -0.02 2.40 16 28 H 0.04 1.14 7.57 -2.38 -0.02 1.13 16 29 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.07 1.94 7.66 -2.38 -0.02 1.92 16 31 H 0.04 0.99 8.00 -2.39 -0.02 0.97 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.04 0.89 7.57 -2.39 -0.02 0.88 16 37 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -66.62 296.60 -0.30 -66.92 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 1.17 Total: 16.64 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 3.65 Total: -18.69 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -4.47 Total: -74.92 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -2.70 Total: -41.39 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 2.05 Total: 51.44 kcal Total: -66.62 -0.30 -66.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258808712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.587 kcal (2) G-P(sol) polarization free energy of solvation -66.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds