Wall clock time and date at job start Mon Mar 30 2020 03:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.62930 * 2 1 4 4 H 1.08997 * 109.46516 * 175.38995 * 3 2 1 5 5 C 1.53041 * 109.46104 * 295.37361 * 3 2 1 6 6 C 1.53117 * 109.27481 * 179.19478 * 5 3 2 7 7 C 1.53111 * 109.16305 * 302.33996 * 6 5 3 8 8 C 1.53038 * 109.27758 * 57.66054 * 7 6 5 9 9 N 1.46847 * 109.46346 * 55.41230 * 3 2 1 10 10 O 1.43748 * 109.63136 * 239.75529 * 2 1 3 11 11 C 1.44782 * 104.81550 * 264.43345 * 10 2 1 12 12 C 1.54916 * 101.72445 * 323.89815 * 11 10 2 13 13 H 1.08996 * 110.69607 * 277.16308 * 12 11 10 14 14 C 1.50696 * 110.69612 * 153.95625 * 12 11 10 15 15 H 1.08000 * 120.00450 * 4.89313 * 14 12 11 16 16 C 1.37883 * 119.99809 * 184.88935 * 14 12 11 17 17 N 1.31510 * 119.99948 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99716 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47297 * 60.00173 * 18 16 14 20 20 H 1.48495 * 109.46676 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47179 * 299.99873 * 18 16 14 22 22 O 1.43375 * 109.62926 * 120.38986 * 2 1 3 23 23 H 1.08997 * 109.46975 * 300.30822 * 1 2 3 24 24 H 1.08994 * 109.47028 * 60.31168 * 1 2 3 25 25 H 1.09001 * 109.47391 * 180.31166 * 1 2 3 26 26 H 1.09000 * 109.49933 * 299.13431 * 5 3 2 27 27 H 1.08996 * 109.50600 * 59.21242 * 5 3 2 28 28 H 1.09004 * 109.52667 * 62.25218 * 6 5 3 29 29 H 1.09006 * 109.51733 * 182.43339 * 6 5 3 30 30 H 1.09001 * 109.50450 * 177.59830 * 7 6 5 31 31 H 1.08997 * 109.50886 * 297.71859 * 7 6 5 32 32 H 1.08999 * 109.46664 * 60.83476 * 8 7 6 33 33 H 1.08996 * 109.46353 * 180.81818 * 8 7 6 34 34 H 1.00906 * 110.99969 * 302.34108 * 9 3 2 35 35 H 1.08999 * 110.97885 * 82.00778 * 11 10 2 36 36 H 1.09000 * 110.97927 * 205.74917 * 11 10 2 37 37 H 0.96999 * 119.99793 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 1 3.1308 1.4391 0.0826 5 6 1.6329 2.1290 -1.3038 6 6 2.1319 3.5766 -1.2906 7 6 1.5565 4.2955 -0.0673 8 6 1.9698 3.5448 1.2006 9 7 1.4681 2.1660 1.1398 10 8 2.0130 -0.6820 -1.1696 11 6 2.2652 -2.0381 -0.7298 12 6 2.7885 -1.8097 0.7104 13 1 3.8508 -1.5661 0.7001 14 6 2.5262 -3.0191 1.5703 15 1 2.1053 -3.9121 1.1324 16 6 2.8238 -2.9856 2.9162 17 7 3.3369 -1.8984 3.4493 18 14 2.4993 -4.4850 3.9821 19 1 3.2851 -5.6361 3.4696 20 1 2.9020 -4.1940 5.3814 21 1 1.0524 -4.8167 3.9427 22 8 2.0117 -0.6832 1.1649 23 1 -0.3633 0.5186 0.8872 24 1 -0.3633 0.5090 -0.8927 25 1 -0.3634 -1.0276 0.0056 26 1 2.0732 1.5999 -2.1489 27 1 0.5467 2.1187 -1.3939 28 1 3.2207 3.5861 -1.2401 29 1 1.8041 4.0831 -2.1985 30 1 1.9423 5.3142 -0.0291 31 1 0.4691 4.3199 -0.1376 32 1 3.0570 3.5327 1.2775 33 1 1.5496 4.0458 2.0726 34 1 0.4597 2.1491 1.1070 35 1 1.3458 -2.6234 -0.7226 36 1 3.0240 -2.5148 -1.3503 37 1 3.5458 -1.8747 4.3963 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258915955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:28 Heat of formation + Delta-G solvation = -96.606040 kcal Electronic energy + Delta-G solvation = -18746.997380 eV Core-core repulsion = 15909.868308 eV Total energy + Delta-G solvation = -2837.129072 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.76882 -37.93831 -33.82559 -32.88878 -31.82981 -31.30168 -28.88908 -27.79099 -24.82726 -23.73667 -22.95146 -21.00845 -20.49917 -19.33507 -16.68969 -16.40214 -15.54392 -14.91942 -14.66012 -14.49447 -14.42581 -13.93066 -13.64970 -13.03420 -12.62880 -12.36251 -12.21334 -12.07281 -11.77353 -11.58662 -11.32502 -11.22221 -10.94045 -10.87433 -10.80891 -10.55535 -10.50725 -10.24053 -10.12727 -9.27952 -8.96972 -8.57877 -8.10356 -7.77600 -6.01752 -4.17880 3.31931 3.36982 3.38619 4.24908 4.40898 4.78168 4.90329 4.95043 5.12551 5.19601 5.32754 5.48103 5.56027 5.60664 5.71786 5.79680 5.95701 5.99262 6.09990 6.12170 6.14265 6.17309 6.21837 6.32214 6.33059 6.40328 6.53771 6.60536 6.76950 6.92866 7.46004 7.49947 7.79619 7.84375 8.18333 8.58343 8.94389 9.53473 11.04959 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035385 B = 0.007163 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.113768 B = 3907.768067 C = 4341.544875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.254 3.746 3 C 0.095 3.905 4 H 0.084 0.916 5 C -0.149 4.149 6 C -0.118 4.118 7 C -0.159 4.159 8 C 0.060 3.940 9 N -0.662 5.662 10 O -0.396 6.396 11 C 0.020 3.980 12 C 0.186 3.814 13 H 0.038 0.962 14 C -0.545 4.545 15 H 0.064 0.936 16 C 0.081 3.919 17 N -0.853 5.853 18 Si 0.894 3.106 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 O -0.336 6.336 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.336 0.664 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.756 8.973 -7.216 12.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.175 3.825 3 C -0.015 4.015 4 H 0.102 0.898 5 C -0.189 4.189 6 C -0.156 4.156 7 C -0.198 4.198 8 C -0.070 4.070 9 N -0.293 5.293 10 O -0.317 6.317 11 C -0.056 4.056 12 C 0.131 3.869 13 H 0.055 0.945 14 C -0.582 4.582 15 H 0.083 0.917 16 C -0.126 4.126 17 N -0.488 5.488 18 Si 0.721 3.279 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 O -0.257 6.257 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.155 0.845 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.223 8.960 -6.572 11.570 hybrid contribution -0.704 -0.443 -0.210 0.858 sum -3.928 8.517 -6.782 11.574 Atomic orbital electron populations 1.22377 0.96299 1.02798 1.01172 1.22956 0.91618 0.90089 0.77847 1.21716 1.00213 0.92027 0.87570 0.89788 1.22263 1.01010 0.95564 1.00025 1.21557 1.00676 0.95810 0.97532 1.22309 1.00667 0.99673 0.97161 1.22006 1.01036 0.88154 0.95826 1.60439 1.12097 1.13184 1.43564 1.89005 1.86306 1.23270 1.33131 1.24529 1.00089 0.82943 0.98052 1.21261 0.92123 0.85437 0.88070 0.94450 1.20898 1.46001 0.97103 0.94174 0.91749 1.25049 0.93699 0.95811 0.98030 1.70040 1.39647 1.26564 1.12536 0.86653 0.78872 0.82948 0.79447 1.20075 1.21110 1.20062 1.89344 1.69424 1.42211 1.24711 0.91193 0.92550 0.91996 0.90759 0.92092 0.91985 0.92450 0.91938 0.92328 0.91008 0.90954 0.84484 0.92100 0.89606 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 8.50 37.16 0.32 -2.77 16 2 C 0.25 5.34 0.91 -26.73 -0.02 5.32 16 3 C 0.10 1.75 2.25 -67.72 -0.15 1.60 16 4 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 5 C -0.15 -2.23 4.92 -26.65 -0.13 -2.36 16 6 C -0.12 -1.49 6.00 -26.61 -0.16 -1.65 16 7 C -0.16 -1.86 6.08 -26.65 -0.16 -2.02 16 8 C 0.06 0.84 6.55 -3.83 -0.03 0.81 16 9 N -0.66 -11.45 6.36 -106.76 -0.68 -12.13 16 10 O -0.40 -8.38 10.17 -59.04 -0.60 -8.98 16 11 C 0.02 0.44 7.33 38.17 0.28 0.72 16 12 C 0.19 4.90 3.51 -26.87 -0.09 4.80 16 13 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 14 C -0.54 -15.21 8.83 -34.44 -0.30 -15.51 16 15 H 0.06 1.72 7.78 -52.49 -0.41 1.31 16 16 C 0.08 2.31 5.42 -17.82 -0.10 2.21 16 17 N -0.85 -25.46 12.95 55.43 0.72 -24.74 16 18 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 O -0.34 -8.87 10.07 -59.04 -0.59 -9.46 16 23 H 0.07 1.23 6.55 -51.93 -0.34 0.89 16 24 H 0.06 0.88 6.57 -51.93 -0.34 0.54 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.07 1.17 7.60 -51.93 -0.39 0.77 16 27 H 0.06 0.87 6.54 -51.93 -0.34 0.53 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.34 5.35 6.75 -39.29 -0.27 5.09 16 35 H 0.06 1.30 8.04 -51.93 -0.42 0.88 16 36 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 290.26 15.07 4.37 4.37 Total: -1.00 -30.48 290.26 -8.23 -38.71 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.87 Total: 4.82 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -0.55 Total: -8.86 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.04 Total: -36.87 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -1.19 Total: -18.44 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.48 -8.23 -38.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258915955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.898 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds