Wall clock time and date at job start Mon Mar 30 2020 03:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.62930 * 2 1 4 4 H 1.08997 * 109.46516 * 175.38995 * 3 2 1 5 5 C 1.53041 * 109.46104 * 295.37361 * 3 2 1 6 6 C 1.53117 * 109.27481 * 179.19478 * 5 3 2 7 7 C 1.53111 * 109.16305 * 302.33996 * 6 5 3 8 8 C 1.53038 * 109.27758 * 57.66054 * 7 6 5 9 9 N 1.46847 * 109.46346 * 55.41230 * 3 2 1 10 10 O 1.43748 * 109.63136 * 239.75529 * 2 1 3 11 11 C 1.44782 * 104.81550 * 264.43345 * 10 2 1 12 12 C 1.54916 * 101.72445 * 323.89815 * 11 10 2 13 13 H 1.08996 * 110.69607 * 277.16308 * 12 11 10 14 14 C 1.50696 * 110.69612 * 153.95625 * 12 11 10 15 15 H 1.08000 * 120.00450 * 4.89313 * 14 12 11 16 16 C 1.37883 * 119.99809 * 184.88935 * 14 12 11 17 17 N 1.31510 * 119.99948 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99716 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47297 * 60.00173 * 18 16 14 20 20 H 1.48495 * 109.46676 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47179 * 299.99873 * 18 16 14 22 22 O 1.43375 * 109.62926 * 120.38986 * 2 1 3 23 23 H 1.08997 * 109.46975 * 300.30822 * 1 2 3 24 24 H 1.08994 * 109.47028 * 60.31168 * 1 2 3 25 25 H 1.09001 * 109.47391 * 180.31166 * 1 2 3 26 26 H 1.09000 * 109.49933 * 299.13431 * 5 3 2 27 27 H 1.08996 * 109.50600 * 59.21242 * 5 3 2 28 28 H 1.09004 * 109.52667 * 62.25218 * 6 5 3 29 29 H 1.09006 * 109.51733 * 182.43339 * 6 5 3 30 30 H 1.09001 * 109.50450 * 177.59830 * 7 6 5 31 31 H 1.08997 * 109.50886 * 297.71859 * 7 6 5 32 32 H 1.08999 * 109.46664 * 60.83476 * 8 7 6 33 33 H 1.08996 * 109.46353 * 180.81818 * 8 7 6 34 34 H 1.00906 * 110.99969 * 302.34108 * 9 3 2 35 35 H 1.08999 * 110.97885 * 82.00778 * 11 10 2 36 36 H 1.09000 * 110.97927 * 205.74917 * 11 10 2 37 37 H 0.96999 * 119.99793 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 1 3.1308 1.4391 0.0826 5 6 1.6329 2.1290 -1.3038 6 6 2.1319 3.5766 -1.2906 7 6 1.5565 4.2955 -0.0673 8 6 1.9698 3.5448 1.2006 9 7 1.4681 2.1660 1.1398 10 8 2.0130 -0.6820 -1.1696 11 6 2.2652 -2.0381 -0.7298 12 6 2.7885 -1.8097 0.7104 13 1 3.8508 -1.5661 0.7001 14 6 2.5262 -3.0191 1.5703 15 1 2.1053 -3.9121 1.1324 16 6 2.8238 -2.9856 2.9162 17 7 3.3369 -1.8984 3.4493 18 14 2.4993 -4.4850 3.9821 19 1 3.2851 -5.6361 3.4696 20 1 2.9020 -4.1940 5.3814 21 1 1.0524 -4.8167 3.9427 22 8 2.0117 -0.6832 1.1649 23 1 -0.3633 0.5186 0.8872 24 1 -0.3633 0.5090 -0.8927 25 1 -0.3634 -1.0276 0.0056 26 1 2.0732 1.5999 -2.1489 27 1 0.5467 2.1187 -1.3939 28 1 3.2207 3.5861 -1.2401 29 1 1.8041 4.0831 -2.1985 30 1 1.9423 5.3142 -0.0291 31 1 0.4691 4.3199 -0.1376 32 1 3.0570 3.5327 1.2775 33 1 1.5496 4.0458 2.0726 34 1 0.4597 2.1491 1.1070 35 1 1.3458 -2.6234 -0.7226 36 1 3.0240 -2.5148 -1.3503 37 1 3.5458 -1.8747 4.3963 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258915955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:28 Heat of formation + Delta-G solvation = -118.021439 kcal Electronic energy + Delta-G solvation = -18747.926021 eV Core-core repulsion = 15909.868308 eV Total energy + Delta-G solvation = -2838.057714 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.39922 -39.32685 -35.73155 -34.70653 -33.47929 -32.53069 -30.52671 -29.44305 -26.76871 -25.17826 -24.16177 -22.94731 -21.73090 -20.79462 -18.79928 -18.01586 -17.23592 -16.69823 -16.16399 -16.03058 -15.64341 -15.33661 -15.10606 -14.68867 -14.21967 -14.08610 -13.62601 -13.61628 -13.42459 -13.00536 -12.81713 -12.72374 -12.70887 -12.41371 -12.37521 -12.17398 -12.02499 -11.64547 -11.42708 -11.18079 -10.80827 -10.62459 -9.96880 -9.09791 -8.15940 -6.40007 1.42192 1.45463 1.53208 2.40021 2.68606 3.05814 3.46247 3.55154 3.82555 3.91656 4.02049 4.12137 4.23386 4.26514 4.33310 4.37613 4.46972 4.60232 4.65555 4.69396 4.82847 4.93188 4.96639 5.01951 5.08371 5.09851 5.13673 5.18350 5.30397 5.42148 5.46933 5.67393 6.08776 6.16876 6.53368 6.61093 6.93963 7.36540 8.91554 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035385 B = 0.007163 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.113768 B = 3907.768067 C = 4341.544875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.239 3.761 3 C 0.102 3.898 4 H 0.048 0.952 5 C -0.139 4.139 6 C -0.116 4.116 7 C -0.148 4.148 8 C 0.057 3.943 9 N -0.686 5.686 10 O -0.394 6.394 11 C 0.032 3.968 12 C 0.178 3.822 13 H 0.000 1.000 14 C -0.562 4.562 15 H 0.073 0.927 16 C 0.025 3.975 17 N -0.895 5.895 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.284 1.284 21 H -0.268 1.268 22 O -0.370 6.370 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.344 0.656 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.275 9.459 -8.065 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.161 3.839 3 C -0.008 4.008 4 H 0.066 0.934 5 C -0.179 4.179 6 C -0.154 4.154 7 C -0.187 4.187 8 C -0.072 4.072 9 N -0.318 5.318 10 O -0.315 6.315 11 C -0.044 4.044 12 C 0.122 3.878 13 H 0.017 0.983 14 C -0.599 4.599 15 H 0.091 0.909 16 C -0.178 4.178 17 N -0.532 5.532 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.209 1.209 21 H -0.193 1.193 22 O -0.291 6.291 23 H 0.093 0.907 24 H 0.105 0.895 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.164 0.836 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.750 9.452 -7.445 12.936 hybrid contribution -0.205 -0.539 0.031 0.578 sum -4.955 8.913 -7.414 12.607 Atomic orbital electron populations 1.22310 0.93919 1.02626 1.02938 1.23445 0.93354 0.90893 0.76235 1.21505 0.98070 0.91174 0.90100 0.93356 1.22161 1.01738 0.96723 0.97244 1.21566 1.00303 0.94336 0.99154 1.22213 1.01427 1.00141 0.94956 1.22076 1.00147 0.86942 0.98046 1.60363 1.12690 1.15228 1.43554 1.88992 1.86482 1.22946 1.33058 1.24401 1.00835 0.83526 0.95667 1.21122 0.90522 0.85406 0.90752 0.98254 1.21320 1.45696 0.98058 0.94849 0.90866 1.25985 0.93299 0.98939 0.99564 1.70205 1.41182 1.29040 1.12735 0.85500 0.79016 0.79141 0.77265 1.18650 1.20941 1.19329 1.89256 1.69566 1.42709 1.27617 0.90690 0.89456 0.93126 0.91697 0.90681 0.92765 0.90010 0.89707 0.91034 0.92588 0.89511 0.83608 0.91284 0.87361 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.67 8.50 71.98 0.61 -5.06 16 2 C 0.24 10.09 0.91 30.59 0.03 10.12 16 3 C 0.10 3.78 2.25 44.94 0.10 3.88 16 4 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 5 C -0.14 -3.93 4.92 30.65 0.15 -3.78 16 6 C -0.12 -2.64 6.00 30.67 0.18 -2.45 16 7 C -0.15 -3.04 6.08 30.64 0.19 -2.86 16 8 C 0.06 1.54 6.55 86.33 0.57 2.10 16 9 N -0.69 -23.52 6.36 -491.68 -3.13 -26.65 16 10 O -0.39 -16.56 10.17 -126.22 -1.28 -17.85 16 11 C 0.03 1.39 7.33 72.64 0.53 1.92 16 12 C 0.18 9.64 3.51 30.50 0.11 9.75 16 13 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 14 C -0.56 -31.90 8.83 25.60 0.23 -31.67 16 15 H 0.07 3.90 7.78 -2.91 -0.02 3.88 16 16 C 0.03 1.45 5.42 84.66 0.46 1.91 16 17 N -0.90 -55.13 12.95 21.45 0.28 -54.86 16 18 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 O -0.37 -20.14 10.07 -126.22 -1.27 -21.41 16 23 H 0.07 2.55 6.55 -2.39 -0.02 2.54 16 24 H 0.09 2.51 6.57 -2.39 -0.02 2.49 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.06 1.95 7.60 -2.39 -0.02 1.93 16 27 H 0.07 1.91 6.54 -2.39 -0.02 1.89 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 34 H 0.34 10.54 6.75 -89.69 -0.61 9.93 16 35 H 0.07 2.88 8.04 -2.39 -0.02 2.87 16 36 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 37 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -67.51 290.26 0.22 -67.29 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.44 Total: 23.57 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 3.15 Total: -16.13 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -2.85 Total: -81.51 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -2.55 Total: -39.26 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -67.51 0.22 -67.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258915955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.729 kcal (2) G-P(sol) polarization free energy of solvation -67.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds