Wall clock time and date at job start Mon Mar 30 2020 03:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.50728 * 2 1 4 4 H 1.08996 * 109.45817 * 56.13930 * 3 2 1 5 5 C 1.53036 * 109.46382 * 296.15958 * 3 2 1 6 6 C 1.53115 * 109.27991 * 180.79467 * 5 3 2 7 7 C 1.53122 * 109.15058 * 57.66706 * 6 5 3 8 8 C 1.53037 * 109.28006 * 302.34132 * 7 6 5 9 9 N 1.46842 * 109.45854 * 176.11385 * 3 2 1 10 10 O 1.43758 * 109.62840 * 239.68283 * 2 1 3 11 11 C 1.44786 * 104.81379 * 264.43273 * 10 2 1 12 12 C 1.54916 * 101.72441 * 323.89840 * 11 10 2 13 13 H 1.08996 * 110.69347 * 276.99502 * 12 11 10 14 14 C 1.50696 * 110.69505 * 153.95787 * 12 11 10 15 15 H 1.08003 * 119.99653 * 359.97438 * 14 12 11 16 16 C 1.37870 * 120.00047 * 180.02562 * 14 12 11 17 17 N 1.31518 * 120.00009 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 120.00179 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47051 * 89.99919 * 18 16 14 20 20 H 1.48501 * 109.47149 * 209.99861 * 18 16 14 21 21 H 1.48502 * 109.47088 * 330.00200 * 18 16 14 22 22 O 1.43367 * 109.63151 * 120.32264 * 2 1 3 23 23 H 1.09001 * 109.47273 * 179.61428 * 1 2 3 24 24 H 1.09001 * 109.47228 * 299.61520 * 1 2 3 25 25 H 1.09000 * 109.46992 * 59.61375 * 1 2 3 26 26 H 1.09000 * 109.49995 * 300.74942 * 5 3 2 27 27 H 1.09000 * 109.50286 * 60.86452 * 5 3 2 28 28 H 1.08999 * 109.53064 * 297.76833 * 6 5 3 29 29 H 1.08991 * 109.52606 * 177.56889 * 6 5 3 30 30 H 1.08997 * 109.49934 * 182.40234 * 7 6 5 31 31 H 1.08999 * 109.53458 * 62.30606 * 7 6 5 32 32 H 1.09003 * 109.46254 * 299.16288 * 8 7 6 33 33 H 1.09005 * 109.46014 * 179.19441 * 8 7 6 34 34 H 1.00902 * 111.00478 * 305.85468 * 9 3 2 35 35 H 1.08995 * 110.97363 * 82.01141 * 11 10 2 36 36 H 1.09000 * 110.97710 * 205.78964 * 11 10 2 37 37 H 0.96996 * 119.99874 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 1 1.6224 1.9757 0.8534 5 6 1.6116 2.1353 -1.2951 6 6 2.1418 3.5717 -1.2996 7 6 3.6657 3.5451 -1.1521 8 6 4.0357 2.8111 0.1388 9 7 3.5063 1.4420 0.0938 10 8 2.0129 -0.6835 -1.1689 11 6 2.2652 -2.0391 -0.7272 12 6 2.7885 -1.8089 0.7126 13 1 3.8515 -1.5682 0.7021 14 6 2.5263 -3.0172 1.5741 15 1 2.0327 -3.8819 1.1555 16 6 2.9155 -3.0184 2.8967 17 7 3.5152 -1.9648 3.4066 18 14 2.5911 -4.5164 3.9644 19 1 3.7481 -5.4436 3.8811 20 1 2.4005 -4.0881 5.3735 21 1 1.3669 -5.2086 3.4875 22 8 2.0117 -0.6817 1.1656 23 1 -0.3634 -1.0276 -0.0069 24 1 -0.3634 0.5078 0.8934 25 1 -0.3633 0.5198 -0.8865 26 1 2.0184 1.5943 -2.1494 27 1 0.5234 2.1490 -1.3570 28 1 1.7050 4.1240 -0.4676 29 1 1.8752 4.0555 -2.2391 30 1 4.0452 4.5661 -1.1117 31 1 4.1053 3.0269 -2.0043 32 1 3.6078 3.3381 0.9917 33 1 5.1206 2.7779 0.2395 34 1 3.8176 0.9076 0.8911 35 1 1.3457 -2.6243 -0.7194 36 1 3.0244 -2.5164 -1.3468 37 1 3.7893 -1.9658 4.3370 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258915956.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:30 Heat of formation + Delta-G solvation = -101.261273 kcal Electronic energy + Delta-G solvation = -18829.947882 eV Core-core repulsion = 15992.616944 eV Total energy + Delta-G solvation = -2837.330939 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.67559 -37.55598 -33.83341 -32.88529 -31.78669 -31.59901 -28.91913 -27.84251 -24.73272 -23.42120 -22.99465 -21.11784 -20.09849 -19.11809 -16.76407 -16.63210 -15.55109 -14.97716 -14.81856 -14.45508 -13.89199 -13.67255 -13.13980 -13.05640 -12.88035 -12.62891 -12.36668 -12.10151 -11.86389 -11.63203 -11.37288 -10.99404 -10.94973 -10.82807 -10.57577 -10.49720 -10.40952 -10.14505 -10.00426 -9.30151 -8.87314 -8.64096 -8.12297 -7.82759 -6.12039 -4.25849 3.25637 3.32710 3.35837 4.33928 4.58250 4.61014 4.89007 5.10089 5.15596 5.23766 5.41270 5.60514 5.62201 5.73554 5.85670 5.94298 6.00153 6.00411 6.12698 6.16495 6.20769 6.22716 6.24763 6.33561 6.39129 6.50228 6.66344 6.70221 6.74694 6.92636 7.50883 7.61025 7.78586 8.00386 8.15555 8.53040 8.86290 9.46058 10.95655 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036063 B = 0.007270 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.233541 B = 3850.435783 C = 4201.761324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.252 3.748 3 C 0.095 3.905 4 H 0.041 0.959 5 C -0.109 4.109 6 C -0.119 4.119 7 C -0.116 4.116 8 C 0.059 3.941 9 N -0.676 5.676 10 O -0.378 6.378 11 C 0.020 3.980 12 C 0.192 3.808 13 H 0.047 0.953 14 C -0.538 4.538 15 H 0.064 0.936 16 C 0.080 3.920 17 N -0.863 5.863 18 Si 0.896 3.104 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.272 1.272 22 O -0.364 6.364 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.022 0.978 33 H 0.069 0.931 34 H 0.359 0.641 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 8.182 -6.825 10.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.174 3.826 3 C -0.016 4.016 4 H 0.059 0.941 5 C -0.147 4.147 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.070 4.070 9 N -0.310 5.310 10 O -0.299 6.299 11 C -0.056 4.056 12 C 0.138 3.862 13 H 0.064 0.936 14 C -0.575 4.575 15 H 0.083 0.917 16 C -0.126 4.126 17 N -0.498 5.498 18 Si 0.723 3.277 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.197 1.197 22 O -0.285 6.285 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.088 0.912 34 H 0.180 0.820 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.004 8.346 -7.324 11.283 hybrid contribution -0.463 -0.621 1.625 1.800 sum -2.466 7.725 -5.698 9.911 Atomic orbital electron populations 1.22358 0.95904 1.02714 1.01484 1.23056 0.91302 0.90170 0.78110 1.21689 0.88785 0.94531 0.96579 0.94119 1.21593 0.99649 0.94881 0.98566 1.21573 0.96032 0.97108 1.00982 1.21580 0.95956 0.99126 0.98709 1.21863 0.99411 0.89739 0.96024 1.60160 1.08575 1.12362 1.49869 1.89082 1.86078 1.22543 1.32163 1.24454 0.99765 0.83477 0.97924 1.21229 0.92246 0.84614 0.88161 0.93552 1.21030 1.41466 0.98855 0.96197 0.91742 1.25050 0.93663 0.95945 0.97976 1.70008 1.37460 1.28265 1.14114 0.86557 0.78819 0.82712 0.79655 1.20389 1.21054 1.19700 1.89187 1.69878 1.43262 1.26190 0.91932 0.91845 0.92028 0.90369 0.92004 0.92733 0.92283 0.92384 0.91259 0.95967 0.91221 0.81984 0.92547 0.89666 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 8.93 37.16 0.33 -2.71 16 2 C 0.25 5.27 0.84 -26.73 -0.02 5.25 16 3 C 0.09 1.75 2.09 -67.72 -0.14 1.61 16 4 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.11 -1.70 4.92 -26.65 -0.13 -1.83 16 6 C -0.12 -1.56 6.00 -26.61 -0.16 -1.72 16 7 C -0.12 -1.53 6.09 -26.65 -0.16 -1.70 16 8 C 0.06 0.91 6.55 -3.83 -0.03 0.88 16 9 N -0.68 -12.72 6.43 -106.76 -0.69 -13.40 16 10 O -0.38 -8.08 10.12 -59.04 -0.60 -8.67 16 11 C 0.02 0.44 7.33 38.17 0.28 0.72 16 12 C 0.19 4.91 3.43 -26.87 -0.09 4.82 16 13 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 14 C -0.54 -14.76 8.81 -34.45 -0.30 -15.06 16 15 H 0.06 1.71 7.76 -52.48 -0.41 1.30 16 16 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 17 N -0.86 -24.81 13.14 55.43 0.73 -24.08 16 18 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 22 O -0.36 -9.23 9.54 -59.04 -0.56 -9.79 16 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.06 0.97 6.53 -51.93 -0.34 0.63 16 26 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 27 H 0.06 0.88 6.57 -51.93 -0.34 0.54 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.36 7.68 8.03 -39.29 -0.32 7.36 16 35 H 0.06 1.21 8.02 -51.93 -0.42 0.79 16 36 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 292.88 15.07 4.41 4.41 Total: -1.00 -28.99 292.88 -8.25 -37.24 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.00 Total: 5.98 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -0.52 Total: -7.62 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.04 Total: -37.49 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -1.16 Total: -18.46 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.99 -8.25 -37.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258915956.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.022 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds