Wall clock time and date at job start Mon Mar 30 2020 03:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.50728 * 2 1 4 4 H 1.08996 * 109.45817 * 56.13930 * 3 2 1 5 5 C 1.53036 * 109.46382 * 296.15958 * 3 2 1 6 6 C 1.53115 * 109.27991 * 180.79467 * 5 3 2 7 7 C 1.53122 * 109.15058 * 57.66706 * 6 5 3 8 8 C 1.53037 * 109.28006 * 302.34132 * 7 6 5 9 9 N 1.46842 * 109.45854 * 176.11385 * 3 2 1 10 10 O 1.43758 * 109.62840 * 239.68283 * 2 1 3 11 11 C 1.44786 * 104.81379 * 264.43273 * 10 2 1 12 12 C 1.54916 * 101.72441 * 323.89840 * 11 10 2 13 13 H 1.08996 * 110.69347 * 276.99502 * 12 11 10 14 14 C 1.50696 * 110.69505 * 153.95787 * 12 11 10 15 15 H 1.08003 * 119.99653 * 359.97438 * 14 12 11 16 16 C 1.37870 * 120.00047 * 180.02562 * 14 12 11 17 17 N 1.31518 * 120.00009 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 120.00179 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47051 * 89.99919 * 18 16 14 20 20 H 1.48501 * 109.47149 * 209.99861 * 18 16 14 21 21 H 1.48502 * 109.47088 * 330.00200 * 18 16 14 22 22 O 1.43367 * 109.63151 * 120.32264 * 2 1 3 23 23 H 1.09001 * 109.47273 * 179.61428 * 1 2 3 24 24 H 1.09001 * 109.47228 * 299.61520 * 1 2 3 25 25 H 1.09000 * 109.46992 * 59.61375 * 1 2 3 26 26 H 1.09000 * 109.49995 * 300.74942 * 5 3 2 27 27 H 1.09000 * 109.50286 * 60.86452 * 5 3 2 28 28 H 1.08999 * 109.53064 * 297.76833 * 6 5 3 29 29 H 1.08991 * 109.52606 * 177.56889 * 6 5 3 30 30 H 1.08997 * 109.49934 * 182.40234 * 7 6 5 31 31 H 1.08999 * 109.53458 * 62.30606 * 7 6 5 32 32 H 1.09003 * 109.46254 * 299.16288 * 8 7 6 33 33 H 1.09005 * 109.46014 * 179.19441 * 8 7 6 34 34 H 1.00902 * 111.00478 * 305.85468 * 9 3 2 35 35 H 1.08995 * 110.97363 * 82.01141 * 11 10 2 36 36 H 1.09000 * 110.97710 * 205.78964 * 11 10 2 37 37 H 0.96996 * 119.99874 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 1 1.6224 1.9757 0.8534 5 6 1.6116 2.1353 -1.2951 6 6 2.1418 3.5717 -1.2996 7 6 3.6657 3.5451 -1.1521 8 6 4.0357 2.8111 0.1388 9 7 3.5063 1.4420 0.0938 10 8 2.0129 -0.6835 -1.1689 11 6 2.2652 -2.0391 -0.7272 12 6 2.7885 -1.8089 0.7126 13 1 3.8515 -1.5682 0.7021 14 6 2.5263 -3.0172 1.5741 15 1 2.0327 -3.8819 1.1555 16 6 2.9155 -3.0184 2.8967 17 7 3.5152 -1.9648 3.4066 18 14 2.5911 -4.5164 3.9644 19 1 3.7481 -5.4436 3.8811 20 1 2.4005 -4.0881 5.3735 21 1 1.3669 -5.2086 3.4875 22 8 2.0117 -0.6817 1.1656 23 1 -0.3634 -1.0276 -0.0069 24 1 -0.3634 0.5078 0.8934 25 1 -0.3633 0.5198 -0.8865 26 1 2.0184 1.5943 -2.1494 27 1 0.5234 2.1490 -1.3570 28 1 1.7050 4.1240 -0.4676 29 1 1.8752 4.0555 -2.2391 30 1 4.0452 4.5661 -1.1117 31 1 4.1053 3.0269 -2.0043 32 1 3.6078 3.3381 0.9917 33 1 5.1206 2.7779 0.2395 34 1 3.8176 0.9076 0.8911 35 1 1.3457 -2.6243 -0.7194 36 1 3.0244 -2.5164 -1.3468 37 1 3.7893 -1.9658 4.3370 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258915956.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:30 Heat of formation + Delta-G solvation = -121.031564 kcal Electronic energy + Delta-G solvation = -18830.805186 eV Core-core repulsion = 15992.616944 eV Total energy + Delta-G solvation = -2838.188243 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.33710 -38.94799 -35.70527 -34.73814 -33.44066 -32.87016 -30.50887 -29.52010 -26.68565 -24.81054 -24.24046 -23.03729 -21.53966 -20.46117 -18.81304 -18.19745 -17.23515 -16.70344 -16.51312 -16.02593 -15.32048 -15.04522 -14.75121 -14.50935 -14.38676 -14.03127 -13.93111 -13.71767 -13.47867 -13.32148 -12.96343 -12.79202 -12.57580 -12.35994 -12.27312 -12.06533 -11.63169 -11.59917 -11.31645 -11.09324 -10.79255 -10.56330 -9.95261 -9.28625 -8.20755 -6.42415 1.41242 1.42233 1.52993 2.38052 2.83800 3.09578 3.21933 3.51575 3.87277 3.97939 4.06714 4.26206 4.32012 4.34313 4.36101 4.43504 4.53698 4.60099 4.67652 4.73119 4.77866 4.92201 4.96548 5.03358 5.10998 5.14011 5.21779 5.28029 5.30230 5.51048 5.52836 5.67857 6.10515 6.24733 6.39536 6.59626 6.87790 7.33906 8.87285 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036063 B = 0.007270 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.233541 B = 3850.435783 C = 4201.761324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.239 3.761 3 C 0.095 3.905 4 H 0.033 0.967 5 C -0.103 4.103 6 C -0.116 4.116 7 C -0.111 4.111 8 C 0.054 3.946 9 N -0.689 5.689 10 O -0.378 6.378 11 C 0.029 3.971 12 C 0.191 3.809 13 H 0.013 0.987 14 C -0.559 4.559 15 H 0.069 0.931 16 C 0.028 3.972 17 N -0.898 5.898 18 Si 0.965 3.035 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.265 1.265 22 O -0.391 6.391 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.023 0.977 33 H 0.074 0.926 34 H 0.337 0.663 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.117 8.811 -7.683 12.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.161 3.839 3 C -0.015 4.015 4 H 0.051 0.949 5 C -0.141 4.141 6 C -0.153 4.153 7 C -0.149 4.149 8 C -0.075 4.075 9 N -0.320 5.320 10 O -0.298 6.298 11 C -0.047 4.047 12 C 0.136 3.864 13 H 0.031 0.969 14 C -0.596 4.596 15 H 0.087 0.913 16 C -0.175 4.175 17 N -0.535 5.535 18 Si 0.789 3.211 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.189 1.189 22 O -0.313 6.313 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.109 0.891 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.093 0.907 34 H 0.155 0.845 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.954 8.990 -8.212 12.530 hybrid contribution -0.149 -0.761 1.864 2.019 sum -3.104 8.229 -6.348 10.846 Atomic orbital electron populations 1.22331 0.93853 1.02647 1.03140 1.23519 0.92853 0.90941 0.76584 1.21732 0.88602 0.93146 0.98057 0.94887 1.21570 1.00637 0.96028 0.95846 1.21581 0.95611 0.95462 1.02669 1.21579 0.96341 1.00171 0.96811 1.22029 0.99695 0.88177 0.97557 1.60248 1.08938 1.14191 1.48672 1.89065 1.86279 1.22226 1.32258 1.24345 1.00333 0.84013 0.96008 1.21003 0.90769 0.84441 0.90159 0.96933 1.21407 1.41488 0.99793 0.96914 0.91310 1.25920 0.93328 0.98907 0.99367 1.70145 1.38579 1.30358 1.14407 0.85470 0.79069 0.79052 0.77485 1.19351 1.20948 1.18924 1.89106 1.69966 1.43609 1.28621 0.92902 0.91423 0.89061 0.91821 0.90383 0.91984 0.89726 0.89550 0.91978 0.95884 0.90708 0.84488 0.91891 0.87974 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.73 8.93 71.98 0.64 -5.08 16 2 C 0.24 9.96 0.84 30.60 0.03 9.99 16 3 C 0.10 3.48 2.09 44.94 0.09 3.58 16 4 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 5 C -0.10 -2.99 4.92 30.64 0.15 -2.84 16 6 C -0.12 -2.67 6.00 30.67 0.18 -2.49 16 7 C -0.11 -2.68 6.09 30.65 0.19 -2.49 16 8 C 0.05 1.63 6.55 86.33 0.57 2.20 16 9 N -0.69 -26.28 6.43 -491.68 -3.16 -29.44 16 10 O -0.38 -15.99 10.12 -126.22 -1.28 -17.26 16 11 C 0.03 1.28 7.33 72.64 0.53 1.82 16 12 C 0.19 10.06 3.43 30.50 0.10 10.17 16 13 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 14 C -0.56 -31.11 8.81 25.60 0.23 -30.88 16 15 H 0.07 3.66 7.76 -2.91 -0.02 3.63 16 16 C 0.03 1.55 5.45 84.65 0.46 2.01 16 17 N -0.90 -53.03 13.14 21.45 0.28 -52.74 16 18 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 22 O -0.39 -20.36 9.54 -126.22 -1.20 -21.57 16 23 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.09 2.64 6.53 -2.39 -0.02 2.63 16 26 H 0.06 2.05 7.58 -2.39 -0.02 2.03 16 27 H 0.08 1.99 6.57 -2.39 -0.02 1.97 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.34 15.13 8.03 -89.69 -0.72 14.41 16 35 H 0.06 2.66 8.02 -2.39 -0.02 2.64 16 36 H 0.10 4.05 8.14 -2.39 -0.02 4.03 16 37 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -63.08 292.88 0.16 -62.91 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 0.33 Total: 26.87 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 3.17 Total: -14.04 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -2.88 Total: -82.19 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -2.48 Total: -38.83 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -63.08 0.16 -62.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258915956.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.117 kcal (2) G-P(sol) polarization free energy of solvation -63.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds