Wall clock time and date at job start Mon Mar 30 2020 03:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.62613 * 2 1 4 4 H 1.09003 * 109.46136 * 56.08358 * 3 2 1 5 5 C 1.53034 * 109.46562 * 296.11723 * 3 2 1 6 6 C 1.53118 * 109.28068 * 180.80341 * 5 3 2 7 7 C 1.53121 * 109.15998 * 57.65604 * 6 5 3 8 8 C 1.53044 * 109.27467 * 302.34543 * 7 6 5 9 9 N 1.46847 * 109.52516 * 59.18169 * 8 7 6 10 10 O 1.43370 * 109.63175 * 239.60903 * 2 1 3 11 11 C 1.44190 * 107.28918 * 240.93715 * 10 2 1 12 12 C 1.54912 * 103.07574 * 21.43676 * 11 10 2 13 13 H 1.09000 * 110.97997 * 82.58640 * 12 11 10 14 14 C 1.50703 * 110.97630 * 206.33052 * 12 11 10 15 15 H 1.07997 * 120.00180 * 359.97438 * 14 12 11 16 16 C 1.37877 * 119.99843 * 180.02562 * 14 12 11 17 17 N 1.31515 * 120.00274 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99959 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47416 * 59.99383 * 18 16 14 20 20 H 1.48497 * 109.47315 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47095 * 299.99675 * 18 16 14 22 22 O 1.43750 * 109.50980 * 120.31986 * 2 1 3 23 23 H 1.08994 * 109.47436 * 59.99787 * 1 2 3 24 24 H 1.09002 * 109.46994 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47060 * 299.99504 * 1 2 3 26 26 H 1.09001 * 109.49974 * 300.74719 * 5 3 2 27 27 H 1.08998 * 109.50670 * 60.86245 * 5 3 2 28 28 H 1.09004 * 109.52160 * 177.55277 * 6 5 3 29 29 H 1.08992 * 109.52406 * 297.74744 * 6 5 3 30 30 H 1.08996 * 109.50720 * 62.28327 * 7 6 5 31 31 H 1.08999 * 109.50475 * 182.36454 * 7 6 5 32 32 H 1.08999 * 109.45943 * 299.16193 * 8 7 6 33 33 H 1.09003 * 109.46209 * 179.19733 * 8 7 6 34 34 H 1.00901 * 110.99839 * 174.16251 * 9 8 7 35 35 H 1.08999 * 110.69309 * 139.83350 * 11 10 2 36 36 H 1.08996 * 110.69434 * 262.86412 * 11 10 2 37 37 H 0.96999 * 119.99904 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 1 1.6257 1.9758 0.8529 5 6 1.6169 2.1348 -1.2955 6 6 2.1503 3.5700 -1.3001 7 6 3.6740 3.5404 -1.1513 8 6 4.0413 2.8059 0.1401 9 7 3.5093 1.4380 0.0951 10 8 2.0117 -0.6831 -1.1648 11 6 2.7856 -1.8117 -0.7104 12 6 2.2601 -2.0403 0.7289 13 1 1.3397 -2.6243 0.7201 14 6 3.3074 -2.7020 1.5869 15 1 4.2716 -2.9492 1.1678 16 6 3.0344 -2.9929 2.9067 17 7 1.8601 -2.6924 3.4170 18 14 4.3329 -3.8125 3.9705 19 1 5.5379 -2.9471 4.0356 20 1 3.7952 -4.0155 5.3397 21 1 4.6981 -5.1260 3.3818 22 8 2.0101 -0.6840 1.1696 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.0233 1.5928 -2.1495 27 1 0.5289 2.1508 -1.3583 28 1 1.8856 4.0541 -2.2402 29 1 1.7139 4.1235 -0.4687 30 1 4.1128 3.0205 -2.0030 31 1 4.0557 4.5606 -1.1117 32 1 3.6138 3.3341 0.9924 33 1 5.1260 2.7705 0.2419 34 1 3.8187 0.9032 0.8928 35 1 2.5948 -2.6855 -1.3334 36 1 3.8486 -1.5713 -0.7015 37 1 1.6682 -2.8967 4.3456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258915958.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:33 Heat of formation + Delta-G solvation = -102.052932 kcal Electronic energy + Delta-G solvation = -18824.773252 eV Core-core repulsion = 15987.407984 eV Total energy + Delta-G solvation = -2837.365267 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.66832 -37.57710 -33.80663 -32.91673 -31.80641 -31.65819 -28.94687 -27.79515 -24.70184 -23.48697 -23.04856 -21.11713 -20.10892 -19.11534 -17.00780 -16.08197 -15.85225 -15.01259 -14.65881 -14.32699 -14.24005 -13.50420 -13.29049 -13.21963 -12.85873 -12.61879 -12.34834 -12.20767 -11.97720 -11.45840 -11.23756 -11.06845 -10.94853 -10.83755 -10.57967 -10.52071 -10.50014 -10.06240 -10.01267 -9.26123 -8.79161 -8.65311 -8.28031 -7.87334 -6.14832 -4.28887 3.26563 3.31356 3.33764 4.31824 4.57275 4.58582 4.87564 5.07401 5.12950 5.21177 5.40543 5.58589 5.64666 5.75070 5.82183 5.93636 5.97530 6.01524 6.10109 6.17291 6.21520 6.23241 6.30115 6.32828 6.40410 6.54718 6.69556 6.71119 6.74739 6.98732 7.44555 7.56504 7.76354 7.95585 8.12363 8.49350 8.81409 9.42876 10.93128 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031609 B = 0.007525 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.599765 B = 3719.981347 C = 4078.987643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.251 3.749 3 C 0.095 3.905 4 H 0.039 0.961 5 C -0.108 4.108 6 C -0.119 4.119 7 C -0.116 4.116 8 C 0.059 3.941 9 N -0.675 5.675 10 O -0.386 6.386 11 C 0.029 3.971 12 C 0.187 3.813 13 H 0.040 0.960 14 C -0.530 4.530 15 H 0.068 0.932 16 C 0.078 3.922 17 N -0.864 5.864 18 Si 0.898 3.102 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.274 1.274 22 O -0.359 6.359 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.022 0.978 33 H 0.069 0.931 34 H 0.358 0.642 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.113 9.125 -6.679 11.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.172 3.828 3 C -0.015 4.015 4 H 0.057 0.943 5 C -0.146 4.146 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.071 4.071 9 N -0.309 5.309 10 O -0.308 6.308 11 C -0.048 4.048 12 C 0.132 3.868 13 H 0.057 0.943 14 C -0.568 4.568 15 H 0.086 0.914 16 C -0.128 4.128 17 N -0.500 5.500 18 Si 0.725 3.275 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.199 1.199 22 O -0.280 6.280 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.088 0.912 34 H 0.178 0.822 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.075 9.197 -7.175 11.665 hybrid contribution 0.336 -0.254 1.646 1.699 sum 0.410 8.943 -5.530 10.523 Atomic orbital electron populations 1.22340 0.95725 1.02820 1.01435 1.23037 0.91342 0.90108 0.78299 1.21665 0.88583 0.94640 0.96643 0.94297 1.21568 0.99724 0.94792 0.98491 1.21575 0.95972 0.97130 1.01020 1.21576 0.96013 0.99121 0.98651 1.21872 0.99348 0.89759 0.96104 1.60146 1.08709 1.12379 1.49686 1.88684 1.69690 1.42514 1.29877 1.24232 0.95960 0.87259 0.97324 1.21396 0.95992 0.80832 0.88543 0.94283 1.20842 1.00297 1.39367 0.96243 0.91419 1.25087 0.95375 0.94345 0.98018 1.70012 1.21081 1.44566 1.14353 0.86577 0.81728 0.79934 0.79286 1.19932 1.21141 1.19914 1.89514 1.84760 1.24939 1.28789 0.92190 0.91903 0.91693 0.90309 0.91948 0.92240 0.92732 0.91259 0.92370 0.95976 0.91245 0.82173 0.90962 0.91712 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 8.92 37.16 0.33 -2.77 16 2 C 0.25 5.26 0.84 -26.73 -0.02 5.23 16 3 C 0.10 1.74 2.09 -67.72 -0.14 1.60 16 4 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.11 -1.67 4.92 -26.65 -0.13 -1.80 16 6 C -0.12 -1.54 6.00 -26.61 -0.16 -1.70 16 7 C -0.12 -1.50 6.09 -26.65 -0.16 -1.66 16 8 C 0.06 0.87 6.55 -3.83 -0.03 0.84 16 9 N -0.68 -12.31 6.43 -106.76 -0.69 -13.00 16 10 O -0.39 -8.29 9.98 -59.04 -0.59 -8.88 16 11 C 0.03 0.63 7.51 38.17 0.29 0.92 16 12 C 0.19 4.80 3.21 -26.87 -0.09 4.71 16 13 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 14 C -0.53 -14.47 8.83 -34.44 -0.30 -14.77 16 15 H 0.07 1.78 7.76 -52.49 -0.41 1.37 16 16 C 0.08 2.15 5.46 -17.82 -0.10 2.06 16 17 N -0.86 -25.01 13.21 55.43 0.73 -24.28 16 18 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 O -0.36 -9.09 9.78 -59.04 -0.58 -9.67 16 23 H 0.06 0.96 6.56 -51.93 -0.34 0.62 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 27 H 0.06 0.89 6.59 -51.93 -0.34 0.55 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.36 7.27 8.03 -39.29 -0.32 6.96 16 35 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.06 1.44 8.01 -51.93 -0.42 1.03 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 LS Contribution 293.08 15.07 4.42 4.42 Total: -1.00 -28.98 293.08 -8.24 -37.22 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.00 Total: 5.68 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -0.51 Total: -7.33 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.05 Total: -37.28 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -1.17 Total: -18.55 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.98 -8.24 -37.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258915958.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.837 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds