Wall clock time and date at job start Mon Mar 30 2020 03:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47686 * 2 1 4 4 C 1.52993 * 109.47343 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47343 * 180.02562 * 4 3 2 6 6 N 1.46495 * 109.47366 * 180.02562 * 5 4 3 7 7 C 1.46092 * 118.72873 * 269.95399 * 6 5 4 8 8 C 1.53024 * 109.91883 * 161.64413 * 7 6 5 9 9 H 1.09000 * 109.74000 * 289.34986 * 8 7 6 10 10 C 1.50694 * 109.60348 * 168.93809 * 8 7 6 11 11 H 1.08000 * 120.00563 * 0.82054 * 10 8 7 12 12 C 1.37885 * 119.99902 * 180.82217 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 O 1.43245 * 108.66558 * 49.18211 * 8 7 6 19 19 C 1.42963 * 112.99030 * 291.63649 * 18 8 7 20 20 C 1.33875 * 118.73090 * 89.99944 * 6 5 4 21 21 O 1.21281 * 118.82961 * 1.86366 * 20 6 5 22 22 H 1.09003 * 109.47126 * 300.00406 * 1 2 3 23 23 H 1.09007 * 109.47056 * 60.00011 * 1 2 3 24 24 H 1.09003 * 109.47517 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47126 * 239.99594 * 2 1 3 26 26 H 1.09001 * 109.47145 * 120.00406 * 2 1 3 27 27 H 1.09002 * 109.46661 * 59.99752 * 3 2 1 28 28 H 1.09001 * 109.46453 * 300.00154 * 3 2 1 29 29 H 1.09003 * 109.47193 * 59.99763 * 4 3 2 30 30 H 1.09001 * 109.47422 * 300.00365 * 4 3 2 31 31 H 1.09003 * 109.47169 * 59.99748 * 5 4 3 32 32 H 1.09007 * 109.46863 * 300.00234 * 5 4 3 33 33 H 1.09005 * 109.38172 * 41.52187 * 7 6 5 34 34 H 1.08990 * 109.41536 * 281.79452 * 7 6 5 35 35 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 36 36 H 1.09002 * 109.41608 * 169.70533 * 19 18 8 37 37 H 1.08999 * 109.41377 * 289.56096 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4423 0.0006 5 6 4.0802 2.8848 0.0013 6 7 5.5451 2.8847 0.0013 7 6 6.2473 2.8851 1.2824 8 6 7.6953 2.4319 1.0834 9 1 7.7190 1.3676 0.8493 10 6 8.4835 2.6906 2.3414 11 1 7.9977 3.1223 3.2040 12 6 9.8251 2.3762 2.3913 13 7 10.4167 1.8500 1.3411 14 14 10.8023 2.6975 3.9505 15 1 11.3791 4.0650 3.9003 16 1 9.9063 2.5812 5.1291 17 1 11.8983 1.7017 4.0618 18 8 8.2634 3.1754 -0.0013 19 6 7.6885 2.8434 -1.2674 20 6 6.1886 2.8852 -1.1726 21 8 5.5386 2.9202 -2.1959 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9562 -0.8900 29 1 3.9337 0.9283 -0.8891 30 1 3.9330 0.9286 0.8908 31 1 3.7165 3.3984 0.8913 32 1 3.7172 3.3989 -0.8887 33 1 5.7461 2.2037 1.9699 34 1 6.2373 3.8915 1.7007 35 1 11.3605 1.6292 1.3762 36 1 8.0243 3.5600 -2.0169 37 1 8.0045 1.8413 -1.5572 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259188430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:59 Heat of formation + Delta-G solvation = -101.303055 kcal Electronic energy + Delta-G solvation = -17722.089806 eV Core-core repulsion = 14884.757056 eV Total energy + Delta-G solvation = -2837.332750 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.87075 -36.66726 -36.28786 -34.45267 -32.76264 -31.10444 -29.36363 -27.16666 -25.37740 -24.76804 -22.41317 -21.34108 -20.96691 -18.17685 -17.17516 -16.54006 -15.86427 -15.62611 -14.96442 -14.59087 -14.39625 -14.03091 -13.70346 -13.52585 -13.10704 -12.94378 -12.57093 -12.30523 -11.89970 -11.77823 -11.35230 -11.15617 -11.04625 -10.98620 -10.87533 -10.83083 -10.59033 -10.43407 -10.02585 -9.60618 -9.25991 -8.66951 -8.28719 -8.05981 -6.19394 -4.33968 3.11334 3.23616 3.30295 3.31915 3.50129 4.29026 4.78543 4.87501 4.91100 5.04403 5.09443 5.31291 5.41925 5.49811 5.55587 5.59920 5.70801 5.83142 5.87101 5.90383 6.00241 6.00882 6.09824 6.13666 6.20087 6.23170 6.34165 6.35940 6.44382 6.93030 7.11862 7.69681 7.77223 8.06841 8.44160 8.63991 8.82889 9.37918 10.88888 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029512 B = 0.005468 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.543929 B = 5119.622920 C = 5747.193543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.134 4.134 5 C 0.108 3.892 6 N -0.603 5.603 7 C 0.088 3.912 8 C 0.206 3.794 9 H 0.026 0.974 10 C -0.532 4.532 11 H 0.070 0.930 12 C 0.080 3.920 13 N -0.858 5.858 14 Si 0.900 3.100 15 H -0.277 1.277 16 H -0.271 1.271 17 H -0.284 1.284 18 O -0.351 6.351 19 C 0.046 3.954 20 C 0.490 3.510 21 O -0.571 6.571 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.265 0.735 36 H 0.107 0.893 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.676 -1.562 -0.473 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.172 4.172 5 C -0.015 4.015 6 N -0.335 5.335 7 C -0.034 4.034 8 C 0.150 3.850 9 H 0.044 0.956 10 C -0.569 4.569 11 H 0.088 0.912 12 C -0.127 4.127 13 N -0.493 5.493 14 Si 0.727 3.273 15 H -0.203 1.203 16 H -0.196 1.196 17 H -0.210 1.210 18 O -0.269 6.269 19 C -0.035 4.035 20 C 0.279 3.721 21 O -0.452 6.452 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.666 -1.471 -1.026 12.793 hybrid contribution 0.380 -0.053 0.775 0.865 sum -12.286 -1.525 -0.251 12.383 Atomic orbital electron populations 1.21776 0.96096 1.01359 1.01676 1.21527 0.95550 0.97085 1.02110 1.21526 0.95096 0.96748 1.01937 1.21931 0.95159 0.97525 1.02624 1.21455 0.80672 0.96769 1.02587 1.47753 1.06346 1.72169 1.07221 1.22502 0.95959 1.01757 0.83204 1.20098 0.86032 0.91891 0.86996 0.95621 1.20826 0.95146 1.45175 0.95772 0.91186 1.25059 0.97747 0.93474 0.96433 1.70017 1.11305 1.39174 1.28777 0.86483 0.79676 0.78305 0.82878 1.20275 1.19575 1.20996 1.88602 1.61657 1.64123 1.12518 1.22488 0.86765 1.02530 0.91710 1.21548 0.92677 0.75008 0.82879 1.90610 1.68377 1.51830 1.34338 0.92840 0.92840 0.92975 0.92068 0.92022 0.92034 0.91953 0.91682 0.91766 0.91050 0.90209 0.91193 0.91732 0.92563 0.87548 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.13 -1.28 5.93 -26.73 -0.16 -1.44 16 3 C -0.11 -1.28 5.21 -26.74 -0.14 -1.42 16 4 C -0.13 -1.87 5.53 -26.74 -0.15 -2.02 16 5 C 0.11 1.69 5.31 -4.04 -0.02 1.67 16 6 N -0.60 -11.52 2.83 -174.41 -0.49 -12.01 16 7 C 0.09 1.75 5.89 -4.25 -0.03 1.73 16 8 C 0.21 5.00 2.53 -27.87 -0.07 4.93 16 9 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 10 C -0.53 -13.91 8.78 -34.44 -0.30 -14.21 16 11 H 0.07 1.74 7.75 -52.49 -0.41 1.33 16 12 C 0.08 2.14 5.40 -17.82 -0.10 2.04 16 13 N -0.86 -24.07 12.84 55.43 0.71 -23.35 16 14 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 O -0.35 -8.82 9.90 -35.23 -0.35 -9.17 16 19 C 0.05 0.97 6.98 35.83 0.25 1.22 16 20 C 0.49 10.29 7.59 -11.56 -0.09 10.20 16 21 O -0.57 -12.78 16.36 5.56 0.09 -12.69 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.96 8.04 -51.93 -0.42 0.55 16 32 H 0.08 1.31 7.23 -51.93 -0.38 0.93 16 33 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 34 H 0.06 1.28 8.09 -51.93 -0.42 0.86 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.11 2.06 8.14 -51.93 -0.42 1.63 16 37 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 307.08 15.07 4.63 4.63 Total: -1.00 -29.61 307.08 -7.11 -36.72 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.25 Total: -1.06 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -0.43 Total: 1.75 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.22 Total: -35.37 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.26 Total: -21.85 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.61 -7.11 -36.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259188430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.585 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds