Wall clock time and date at job start Mon Mar 30 2020 03:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47686 * 2 1 4 4 C 1.52993 * 109.47343 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47343 * 180.02562 * 4 3 2 6 6 N 1.46495 * 109.47366 * 180.02562 * 5 4 3 7 7 C 1.46092 * 118.72873 * 269.95399 * 6 5 4 8 8 C 1.53024 * 109.91883 * 161.64413 * 7 6 5 9 9 H 1.09000 * 109.74000 * 289.34986 * 8 7 6 10 10 C 1.50694 * 109.60348 * 168.93809 * 8 7 6 11 11 H 1.08000 * 120.00563 * 0.82054 * 10 8 7 12 12 C 1.37885 * 119.99902 * 180.82217 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 O 1.43245 * 108.66558 * 49.18211 * 8 7 6 19 19 C 1.42963 * 112.99030 * 291.63649 * 18 8 7 20 20 C 1.33875 * 118.73090 * 89.99944 * 6 5 4 21 21 O 1.21281 * 118.82961 * 1.86366 * 20 6 5 22 22 H 1.09003 * 109.47126 * 300.00406 * 1 2 3 23 23 H 1.09007 * 109.47056 * 60.00011 * 1 2 3 24 24 H 1.09003 * 109.47517 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47126 * 239.99594 * 2 1 3 26 26 H 1.09001 * 109.47145 * 120.00406 * 2 1 3 27 27 H 1.09002 * 109.46661 * 59.99752 * 3 2 1 28 28 H 1.09001 * 109.46453 * 300.00154 * 3 2 1 29 29 H 1.09003 * 109.47193 * 59.99763 * 4 3 2 30 30 H 1.09001 * 109.47422 * 300.00365 * 4 3 2 31 31 H 1.09003 * 109.47169 * 59.99748 * 5 4 3 32 32 H 1.09007 * 109.46863 * 300.00234 * 5 4 3 33 33 H 1.09005 * 109.38172 * 41.52187 * 7 6 5 34 34 H 1.08990 * 109.41536 * 281.79452 * 7 6 5 35 35 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 36 36 H 1.09002 * 109.41608 * 169.70533 * 19 18 8 37 37 H 1.08999 * 109.41377 * 289.56096 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4423 0.0006 5 6 4.0802 2.8848 0.0013 6 7 5.5451 2.8847 0.0013 7 6 6.2473 2.8851 1.2824 8 6 7.6953 2.4319 1.0834 9 1 7.7190 1.3676 0.8493 10 6 8.4835 2.6906 2.3414 11 1 7.9977 3.1223 3.2040 12 6 9.8251 2.3762 2.3913 13 7 10.4167 1.8500 1.3411 14 14 10.8023 2.6975 3.9505 15 1 11.3791 4.0650 3.9003 16 1 9.9063 2.5812 5.1291 17 1 11.8983 1.7017 4.0618 18 8 8.2634 3.1754 -0.0013 19 6 7.6885 2.8434 -1.2674 20 6 6.1886 2.8852 -1.1726 21 8 5.5386 2.9202 -2.1959 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9562 -0.8900 29 1 3.9337 0.9283 -0.8891 30 1 3.9330 0.9286 0.8908 31 1 3.7165 3.3984 0.8913 32 1 3.7172 3.3989 -0.8887 33 1 5.7461 2.2037 1.9699 34 1 6.2373 3.8915 1.7007 35 1 11.3605 1.6292 1.3762 36 1 8.0243 3.5600 -2.0169 37 1 8.0045 1.8413 -1.5572 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259188430.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:58 Heat of formation + Delta-G solvation = -119.130611 kcal Electronic energy + Delta-G solvation = -17722.862867 eV Core-core repulsion = 14884.757056 eV Total energy + Delta-G solvation = -2838.105811 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.52105 -38.47307 -37.47725 -35.77320 -34.74633 -32.29301 -31.11956 -28.62551 -27.09880 -26.20168 -23.93390 -22.70510 -21.91604 -19.85642 -19.04925 -18.22278 -17.52409 -16.75714 -16.64801 -16.30654 -16.03198 -15.47388 -15.12372 -14.64596 -14.37605 -14.33542 -14.07571 -13.97051 -13.17795 -13.01570 -12.85234 -12.76781 -12.73420 -12.32000 -12.00239 -11.94809 -11.81754 -11.76861 -11.41976 -11.37625 -11.16529 -10.64378 -9.99841 -9.69892 -8.19808 -6.41097 1.43962 1.47579 1.48827 1.59007 1.96422 2.42101 2.98396 3.49963 3.63630 3.84022 3.94464 4.10554 4.21899 4.23337 4.36345 4.43348 4.48948 4.52661 4.56087 4.66586 4.67110 4.82596 4.90543 5.01595 5.05188 5.18675 5.24001 5.27463 5.40603 5.46604 5.50202 5.69627 5.91250 6.31028 6.56930 6.81250 7.05055 7.35579 8.89321 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029512 B = 0.005468 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.543929 B = 5119.622920 C = 5747.193543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.108 4.108 4 C -0.127 4.127 5 C 0.105 3.895 6 N -0.600 5.600 7 C 0.101 3.899 8 C 0.200 3.800 9 H -0.003 1.003 10 C -0.549 4.549 11 H 0.081 0.919 12 C 0.027 3.973 13 N -0.897 5.897 14 Si 0.968 3.032 15 H -0.277 1.277 16 H -0.256 1.256 17 H -0.284 1.284 18 O -0.377 6.377 19 C 0.044 3.956 20 C 0.487 3.513 21 O -0.588 6.588 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.265 0.735 36 H 0.124 0.876 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.077 -1.085 1.006 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.146 4.146 4 C -0.165 4.165 5 C -0.017 4.017 6 N -0.331 5.331 7 C -0.021 4.021 8 C 0.144 3.856 9 H 0.015 0.985 10 C -0.586 4.586 11 H 0.099 0.901 12 C -0.176 4.176 13 N -0.534 5.534 14 Si 0.793 3.207 15 H -0.203 1.203 16 H -0.180 1.180 17 H -0.209 1.209 18 O -0.296 6.296 19 C -0.036 4.036 20 C 0.276 3.724 21 O -0.471 6.471 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.141 0.859 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.102 -0.994 0.473 14.145 hybrid contribution 0.792 -0.217 0.268 0.864 sum -13.309 -1.211 0.741 13.385 Atomic orbital electron populations 1.21753 0.94686 1.02039 1.02169 1.21528 0.96786 0.96340 1.01729 1.21489 0.92732 0.97614 1.02786 1.21862 0.97228 0.96066 1.01375 1.21719 0.78215 0.98055 1.03670 1.47786 1.07953 1.71092 1.06297 1.22271 0.93577 1.02508 0.83762 1.20025 0.88584 0.90438 0.86504 0.98517 1.21282 0.95689 1.44740 0.96893 0.90056 1.25950 0.98991 0.93176 0.99532 1.70149 1.11552 1.40659 1.31022 0.85410 0.78160 0.77827 0.79342 1.20252 1.18025 1.20942 1.88514 1.62883 1.64304 1.13900 1.22595 0.87457 1.02961 0.90635 1.21370 0.92369 0.75254 0.83363 1.90600 1.68533 1.53014 1.34906 0.92033 0.92656 0.92276 0.93013 0.91950 0.90302 0.91925 0.94212 0.91724 0.88106 0.90904 0.88881 0.90975 0.92644 0.85853 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 71.98 0.71 -1.55 16 2 C -0.13 -2.37 5.93 30.59 0.18 -2.19 16 3 C -0.11 -2.18 5.21 30.59 0.16 -2.02 16 4 C -0.13 -3.36 5.53 30.59 0.17 -3.20 16 5 C 0.11 3.07 5.31 86.38 0.46 3.53 16 6 N -0.60 -22.25 2.83 -824.62 -2.34 -24.58 16 7 C 0.10 3.87 5.89 86.46 0.51 4.38 16 8 C 0.20 9.78 2.53 29.85 0.08 9.86 16 9 H 0.00 -0.15 8.10 -2.39 -0.02 -0.17 16 10 C -0.55 -28.47 8.78 25.60 0.22 -28.25 16 11 H 0.08 3.92 7.75 -2.91 -0.02 3.90 16 12 C 0.03 1.43 5.40 84.66 0.46 1.89 16 13 N -0.90 -51.16 12.84 21.45 0.28 -50.88 16 14 Si 0.97 41.11 29.54 68.60 2.03 43.14 16 15 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 16 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 17 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 18 O -0.38 -19.19 9.90 -148.98 -1.47 -20.66 16 19 C 0.04 1.88 6.98 71.12 0.50 2.38 16 20 C 0.49 20.39 7.59 87.68 0.67 21.05 16 21 O -0.59 -26.20 16.36 -3.03 -0.05 -26.25 16 22 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 31 H 0.10 2.38 8.04 -2.39 -0.02 2.36 16 32 H 0.07 2.27 7.23 -2.38 -0.02 2.25 16 33 H 0.09 3.14 8.13 -2.38 -0.02 3.12 16 34 H 0.07 2.69 8.09 -2.39 -0.02 2.67 16 35 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 36 H 0.12 4.80 8.14 -2.39 -0.02 4.78 16 37 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -63.04 307.08 3.57 -59.46 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.02 Total: 13.89 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 4.11 Total: 5.89 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -2.06 Total: -75.46 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -1.52 Total: -46.91 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -63.04 3.57 -59.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259188430.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.668 kcal (2) G-P(sol) polarization free energy of solvation -63.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds