Wall clock time and date at job start Mon Mar 30 2020 03:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46997 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47373 * 180.02562 * 5 4 3 7 7 C 1.46088 * 118.72776 * 89.99607 * 6 5 4 8 8 C 1.53021 * 109.92663 * 198.33443 * 7 6 5 9 9 H 1.09004 * 109.59967 * 70.75671 * 8 7 6 10 10 C 1.50699 * 109.60868 * 191.08206 * 8 7 6 11 11 H 1.08007 * 119.99625 * 0.02562 * 10 8 7 12 12 C 1.37877 * 120.00178 * 179.97438 * 10 8 7 13 13 N 1.31508 * 120.00175 * 180.02562 * 12 10 8 14 14 Si 1.86802 * 119.99769 * 0.02562 * 12 10 8 15 15 H 1.48502 * 109.47264 * 89.99643 * 14 12 10 16 16 H 1.48501 * 109.47074 * 209.99772 * 14 12 10 17 17 H 1.48500 * 109.47165 * 329.99682 * 14 12 10 18 18 O 1.43247 * 108.67029 * 310.84496 * 8 7 6 19 19 C 1.42967 * 112.98751 * 68.35684 * 18 8 7 20 20 C 1.33863 * 118.72783 * 269.72974 * 6 5 4 21 21 O 1.21286 * 118.83696 * 358.13812 * 20 6 5 22 22 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 23 23 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 25 25 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 26 26 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 27 27 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 28 28 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 29 29 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 30 30 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 31 31 H 1.09000 * 109.46866 * 300.00212 * 5 4 3 32 32 H 1.08996 * 109.47261 * 59.99820 * 5 4 3 33 33 H 1.09000 * 109.40102 * 318.48216 * 7 6 5 34 34 H 1.09008 * 109.39319 * 78.29146 * 7 6 5 35 35 H 0.97001 * 120.00256 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.41403 * 70.50813 * 19 18 8 37 37 H 1.09004 * 109.41138 * 190.36560 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8852 0.0000 6 7 5.5449 2.8853 0.0000 7 6 6.2470 2.8846 -1.2811 8 6 7.6952 2.4323 -1.0818 9 1 7.7170 1.3677 -0.8486 10 6 8.4834 2.6905 -2.3400 11 1 8.0004 3.1341 -3.1983 12 6 9.8212 2.3616 -2.3953 13 7 10.5091 2.5874 -3.4931 14 14 10.6565 1.5951 -0.9106 15 1 10.5447 0.1164 -0.9882 16 1 12.0899 1.9830 -0.8940 17 1 9.9991 2.0768 0.3308 18 8 8.2631 3.1766 0.0024 19 6 7.6882 2.8451 1.2687 20 6 6.1883 2.8914 1.1738 21 8 5.5383 2.9311 2.1970 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6765 1.9564 -0.8900 28 1 1.6764 1.9564 0.8900 29 1 3.9329 0.9289 0.8909 30 1 3.9336 0.9287 -0.8892 31 1 3.7168 3.3984 -0.8904 32 1 3.7161 3.3995 0.8895 33 1 5.7461 2.2028 -1.9682 34 1 6.2380 3.8913 -1.6993 35 1 11.4502 2.3556 -3.5321 36 1 8.0056 1.8438 1.5597 37 1 8.0228 3.5631 2.0176 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259188433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:00 Heat of formation + Delta-G solvation = -94.356711 kcal Electronic energy + Delta-G solvation = -17819.510426 eV Core-core repulsion = 14982.478891 eV Total energy + Delta-G solvation = -2837.031534 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.10049 -37.04522 -36.38484 -34.63146 -32.79426 -31.22738 -29.80035 -27.38339 -25.56155 -24.96871 -22.42914 -21.24774 -21.00349 -18.47157 -17.45919 -16.69437 -16.17581 -15.71988 -15.22332 -14.73520 -14.50279 -14.17060 -13.79693 -13.57527 -13.34994 -13.04876 -12.78145 -12.46893 -12.02331 -11.89389 -11.70375 -11.24692 -11.13984 -10.98487 -10.92358 -10.87651 -10.52876 -10.37622 -9.90869 -9.80415 -9.40217 -8.75078 -8.46499 -8.27741 -6.27962 -4.39668 2.92396 3.26675 3.31951 3.37521 3.53429 4.37627 4.61784 4.73653 4.81084 4.92569 4.99964 5.19742 5.34560 5.36256 5.48435 5.52476 5.63478 5.69504 5.74109 5.80351 5.81635 5.87641 5.93873 5.97094 6.00447 6.12406 6.15264 6.27890 6.35580 6.68581 6.78499 7.29090 7.74135 8.07865 8.22386 8.48698 8.70957 9.33133 10.81408 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031161 B = 0.005820 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.332963 B = 4810.016821 C = 5224.837421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.134 4.134 5 C 0.108 3.892 6 N -0.603 5.603 7 C 0.097 3.903 8 C 0.171 3.829 9 H 0.025 0.975 10 C -0.522 4.522 11 H 0.085 0.915 12 C 0.089 3.911 13 N -0.881 5.881 14 Si 0.876 3.124 15 H -0.284 1.284 16 H -0.289 1.289 17 H -0.230 1.230 18 O -0.369 6.369 19 C 0.040 3.960 20 C 0.491 3.509 21 O -0.566 6.566 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.269 0.731 36 H 0.074 0.926 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.473 -3.204 5.875 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.173 4.173 5 C -0.015 4.015 6 N -0.335 5.335 7 C -0.025 4.025 8 C 0.115 3.885 9 H 0.042 0.958 10 C -0.558 4.558 11 H 0.103 0.897 12 C -0.118 4.118 13 N -0.517 5.517 14 Si 0.702 3.298 15 H -0.211 1.211 16 H -0.215 1.215 17 H -0.153 1.153 18 O -0.288 6.288 19 C -0.040 4.040 20 C 0.280 3.720 21 O -0.446 6.446 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.471 -3.035 6.258 15.161 hybrid contribution 0.384 -0.569 0.515 0.858 sum -13.086 -3.604 6.774 15.170 Atomic orbital electron populations 1.21775 0.96051 1.01395 1.01710 1.21526 0.95609 0.97033 1.02092 1.21528 0.94974 0.96812 1.02021 1.21938 0.95315 0.97404 1.02620 1.21482 0.80221 0.96904 1.02845 1.47758 1.06629 1.72016 1.07099 1.22279 0.94565 1.02438 0.83201 1.20554 0.89026 0.91579 0.87321 0.95765 1.20695 0.95514 1.44459 0.95160 0.89677 1.25003 0.97049 0.93679 0.96041 1.69899 1.09116 1.45408 1.27310 0.86962 0.78663 0.78630 0.85536 1.21057 1.21470 1.15320 1.88701 1.61226 1.65632 1.13251 1.22529 0.87580 1.02682 0.91216 1.21301 0.92250 0.75419 0.83076 1.90634 1.68163 1.51585 1.34258 0.92787 0.92956 0.92843 0.91990 0.92109 0.91928 0.91936 0.91718 0.91677 0.90798 0.90060 0.90584 0.91026 0.92116 0.90813 0.87024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.21 5.93 -26.73 -0.16 -1.37 16 3 C -0.12 -1.21 5.21 -26.73 -0.14 -1.35 16 4 C -0.13 -1.75 5.54 -26.73 -0.15 -1.90 16 5 C 0.11 1.58 5.32 -4.04 -0.02 1.56 16 6 N -0.60 -10.75 2.83 -174.40 -0.49 -11.24 16 7 C 0.10 1.83 5.89 -4.25 -0.03 1.80 16 8 C 0.17 3.83 2.00 -27.87 -0.06 3.77 16 9 H 0.02 0.55 7.52 -51.93 -0.39 0.16 16 10 C -0.52 -13.79 9.35 -34.44 -0.32 -14.12 16 11 H 0.09 2.38 7.99 -52.48 -0.42 1.96 16 12 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 13 N -0.88 -25.64 13.96 55.43 0.77 -24.86 16 14 Si 0.88 20.73 27.00 -169.99 -4.59 16.14 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.23 -5.18 4.92 56.52 0.28 -4.91 16 18 O -0.37 -8.30 7.65 -35.23 -0.27 -8.56 16 19 C 0.04 0.76 6.51 35.84 0.23 1.00 16 20 C 0.49 9.52 7.59 -11.56 -0.09 9.44 16 21 O -0.57 -11.85 16.35 5.55 0.09 -11.76 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 32 H 0.08 1.25 7.23 -51.93 -0.38 0.87 16 33 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 34 H 0.07 1.37 8.09 -51.92 -0.42 0.95 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 37 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 LS Contribution 300.47 15.07 4.53 4.53 Total: -1.00 -29.90 300.47 -6.77 -36.66 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.35 Total: -1.17 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -0.45 Total: 0.27 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.28 Total: -36.10 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.18 Total: -20.32 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.59 Total: 16.14 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.90 -6.77 -36.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259188433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.696 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds