Wall clock time and date at job start Mon Mar 30 2020 03:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46997 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47373 * 180.02562 * 5 4 3 7 7 C 1.46088 * 118.72776 * 89.99607 * 6 5 4 8 8 C 1.53021 * 109.92663 * 198.33443 * 7 6 5 9 9 H 1.09004 * 109.59967 * 70.75671 * 8 7 6 10 10 C 1.50699 * 109.60868 * 191.08206 * 8 7 6 11 11 H 1.08007 * 119.99625 * 0.02562 * 10 8 7 12 12 C 1.37877 * 120.00178 * 179.97438 * 10 8 7 13 13 N 1.31508 * 120.00175 * 180.02562 * 12 10 8 14 14 Si 1.86802 * 119.99769 * 0.02562 * 12 10 8 15 15 H 1.48502 * 109.47264 * 89.99643 * 14 12 10 16 16 H 1.48501 * 109.47074 * 209.99772 * 14 12 10 17 17 H 1.48500 * 109.47165 * 329.99682 * 14 12 10 18 18 O 1.43247 * 108.67029 * 310.84496 * 8 7 6 19 19 C 1.42967 * 112.98751 * 68.35684 * 18 8 7 20 20 C 1.33863 * 118.72783 * 269.72974 * 6 5 4 21 21 O 1.21286 * 118.83696 * 358.13812 * 20 6 5 22 22 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 23 23 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 25 25 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 26 26 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 27 27 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 28 28 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 29 29 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 30 30 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 31 31 H 1.09000 * 109.46866 * 300.00212 * 5 4 3 32 32 H 1.08996 * 109.47261 * 59.99820 * 5 4 3 33 33 H 1.09000 * 109.40102 * 318.48216 * 7 6 5 34 34 H 1.09008 * 109.39319 * 78.29146 * 7 6 5 35 35 H 0.97001 * 120.00256 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.41403 * 70.50813 * 19 18 8 37 37 H 1.09004 * 109.41138 * 190.36560 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8852 0.0000 6 7 5.5449 2.8853 0.0000 7 6 6.2470 2.8846 -1.2811 8 6 7.6952 2.4323 -1.0818 9 1 7.7170 1.3677 -0.8486 10 6 8.4834 2.6905 -2.3400 11 1 8.0004 3.1341 -3.1983 12 6 9.8212 2.3616 -2.3953 13 7 10.5091 2.5874 -3.4931 14 14 10.6565 1.5951 -0.9106 15 1 10.5447 0.1164 -0.9882 16 1 12.0899 1.9830 -0.8940 17 1 9.9991 2.0768 0.3308 18 8 8.2631 3.1766 0.0024 19 6 7.6882 2.8451 1.2687 20 6 6.1883 2.8914 1.1738 21 8 5.5383 2.9311 2.1970 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6765 1.9564 -0.8900 28 1 1.6764 1.9564 0.8900 29 1 3.9329 0.9289 0.8909 30 1 3.9336 0.9287 -0.8892 31 1 3.7168 3.3984 -0.8904 32 1 3.7161 3.3995 0.8895 33 1 5.7461 2.2028 -1.9682 34 1 6.2380 3.8913 -1.6993 35 1 11.4502 2.3556 -3.5321 36 1 8.0056 1.8438 1.5597 37 1 8.0228 3.5631 2.0176 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259188433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:00 Heat of formation + Delta-G solvation = -112.851607 kcal Electronic energy + Delta-G solvation = -17820.312424 eV Core-core repulsion = 14982.478891 eV Total energy + Delta-G solvation = -2837.833533 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.61602 -38.70373 -37.50044 -35.83434 -34.81684 -32.37468 -31.45375 -28.70710 -27.24195 -26.26026 -23.78671 -22.60321 -21.91282 -20.04562 -19.29212 -18.29672 -17.74630 -16.86448 -16.67758 -16.27015 -16.08460 -15.64536 -15.14557 -14.70015 -14.59053 -14.37661 -14.14938 -14.08873 -13.44796 -13.03967 -12.86980 -12.77475 -12.69176 -12.27347 -11.99357 -11.83837 -11.79805 -11.69641 -11.58429 -11.40053 -11.15926 -10.79706 -10.08189 -9.74194 -8.36853 -6.52346 1.39762 1.41221 1.47717 1.65609 1.92210 2.41427 2.79901 3.41771 3.48389 3.83820 3.94542 4.04017 4.18356 4.21091 4.26126 4.32344 4.45297 4.48864 4.54758 4.60057 4.66765 4.82148 4.90660 4.99717 5.05079 5.07501 5.18956 5.24709 5.34369 5.41485 5.46968 5.50526 6.07824 6.23851 6.43076 6.62573 6.99095 7.24571 8.75807 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031161 B = 0.005820 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.332963 B = 4810.016821 C = 5224.837421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.110 4.110 4 C -0.127 4.127 5 C 0.105 3.895 6 N -0.601 5.601 7 C 0.108 3.892 8 C 0.173 3.827 9 H 0.030 0.970 10 C -0.527 4.527 11 H 0.057 0.943 12 C 0.035 3.965 13 N -0.929 5.929 14 Si 0.932 3.068 15 H -0.277 1.277 16 H -0.293 1.293 17 H -0.211 1.211 18 O -0.388 6.388 19 C 0.036 3.964 20 C 0.487 3.513 21 O -0.584 6.584 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.270 0.730 36 H 0.090 0.910 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.749 -3.765 7.052 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.148 4.148 4 C -0.165 4.165 5 C -0.017 4.017 6 N -0.332 5.332 7 C -0.015 4.015 8 C 0.117 3.883 9 H 0.048 0.952 10 C -0.564 4.564 11 H 0.075 0.925 12 C -0.167 4.167 13 N -0.567 5.567 14 Si 0.756 3.244 15 H -0.203 1.203 16 H -0.220 1.220 17 H -0.133 1.133 18 O -0.308 6.308 19 C -0.044 4.044 20 C 0.276 3.724 21 O -0.467 6.467 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.781 -3.596 7.434 16.932 hybrid contribution 0.715 -0.352 0.129 0.808 sum -14.066 -3.949 7.563 16.451 Atomic orbital electron populations 1.21758 0.94867 1.02012 1.02110 1.21524 0.96657 0.96339 1.01798 1.21496 0.92994 0.97590 1.02688 1.21863 0.97048 0.95969 1.01635 1.21708 0.78177 0.98158 1.03619 1.47785 1.07990 1.71217 1.06225 1.22053 0.92924 1.02592 0.83909 1.20363 0.90296 0.91811 0.85878 0.95211 1.20925 0.95770 1.43332 0.96350 0.92510 1.25846 0.97944 0.94353 0.98544 1.70018 1.09563 1.47648 1.29504 0.86082 0.77284 0.78072 0.82966 1.20254 1.21996 1.13317 1.88591 1.61891 1.65770 1.14503 1.22767 0.87446 1.04276 0.89864 1.21341 0.92404 0.75417 0.83248 1.90631 1.68494 1.52736 1.34796 0.92187 0.92296 0.92651 0.91971 0.92787 0.90592 0.91912 0.93687 0.91606 0.88527 0.90745 0.88635 0.91430 0.92060 0.89222 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.45 16 2 C -0.13 -2.19 5.93 30.60 0.18 -2.01 16 3 C -0.11 -2.06 5.21 30.60 0.16 -1.90 16 4 C -0.13 -3.05 5.54 30.60 0.17 -2.89 16 5 C 0.11 2.84 5.32 86.38 0.46 3.29 16 6 N -0.60 -20.17 2.83 -824.59 -2.33 -22.50 16 7 C 0.11 3.86 5.89 86.46 0.51 4.37 16 8 C 0.17 7.47 2.00 29.85 0.06 7.53 16 9 H 0.03 1.28 7.52 -2.39 -0.02 1.26 16 10 C -0.53 -27.94 9.35 25.60 0.24 -27.70 16 11 H 0.06 3.25 7.99 -2.91 -0.02 3.22 16 12 C 0.03 1.91 5.47 84.66 0.46 2.37 16 13 N -0.93 -55.11 13.96 21.45 0.30 -54.81 16 14 Si 0.93 42.18 27.00 68.60 1.85 44.03 16 15 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 16 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 17 H -0.21 -8.80 4.92 99.48 0.49 -8.31 16 18 O -0.39 -16.66 7.65 -148.98 -1.14 -17.80 16 19 C 0.04 1.27 6.51 71.13 0.46 1.73 16 20 C 0.49 17.88 7.59 87.69 0.67 18.54 16 21 O -0.58 -23.41 16.35 -3.05 -0.05 -23.46 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 2.17 8.04 -2.39 -0.02 2.15 16 32 H 0.07 2.15 7.23 -2.39 -0.02 2.13 16 33 H 0.10 3.05 8.13 -2.39 -0.02 3.03 16 34 H 0.07 2.50 8.09 -2.38 -0.02 2.48 16 35 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.09 2.92 8.10 -2.39 -0.02 2.90 16 37 H 0.13 4.14 8.14 -2.38 -0.02 4.12 16 Total: -1.00 -63.46 300.47 3.51 -59.95 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.80 Total: 12.70 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 4.08 Total: 1.90 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -2.04 Total: -77.31 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -1.19 Total: -41.26 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.85 Total: 44.03 kcal Total: -63.46 3.51 -59.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259188433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.906 kcal (2) G-P(sol) polarization free energy of solvation -63.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds