Wall clock time and date at job start Mon Mar 30 2020 03:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46868 * 2 1 4 4 C 1.52999 * 109.47441 * 120.00015 * 2 1 3 5 5 C 1.52998 * 109.47213 * 174.23225 * 4 2 1 6 6 H 1.08996 * 108.72651 * 57.86008 * 5 4 2 7 7 C 1.51335 * 108.76235 * 176.14253 * 5 4 2 8 8 O 1.46706 * 107.54582 * 212.42624 * 7 5 4 9 9 C 1.29058 * 118.16589 * 287.21255 * 8 7 5 10 10 O 1.20816 * 119.95868 * 235.40011 * 9 8 7 11 11 C 1.52502 * 120.08760 * 55.42391 * 9 8 7 12 12 C 1.51403 * 107.45188 * 289.96513 * 11 9 8 13 13 H 1.09006 * 108.74794 * 326.75015 * 12 11 9 14 14 C 1.50704 * 108.75193 * 208.64615 * 12 11 9 15 15 H 1.07999 * 119.99935 * 236.38898 * 14 12 11 16 16 C 1.37867 * 120.00254 * 56.38776 * 14 12 11 17 17 N 1.31523 * 120.00310 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 120.00269 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47272 * 59.99792 * 18 16 14 20 20 H 1.48502 * 109.47249 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46773 * 299.99939 * 18 16 14 22 22 N 1.47038 * 113.14344 * 87.69723 * 12 11 9 23 23 H 1.09003 * 109.47493 * 55.88475 * 1 2 3 24 24 H 1.08998 * 109.47050 * 175.88924 * 1 2 3 25 25 H 1.09007 * 109.47136 * 295.88636 * 1 2 3 26 26 H 1.08996 * 109.47068 * 240.00334 * 2 1 3 27 27 H 1.09000 * 109.47010 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47749 * 300.00302 * 3 2 1 29 29 H 1.09005 * 109.46972 * 60.00227 * 3 2 1 30 30 H 1.09001 * 109.46974 * 54.23174 * 4 2 1 31 31 H 1.09000 * 109.46760 * 294.23705 * 4 2 1 32 32 H 1.09001 * 109.84121 * 92.91286 * 7 5 4 33 33 H 1.09004 * 109.89731 * 331.97104 * 7 5 4 34 34 H 1.08996 * 109.86231 * 170.48053 * 11 9 8 35 35 H 1.09001 * 109.86414 * 49.45036 * 11 9 8 36 36 H 0.96988 * 120.00488 * 179.97438 * 17 16 14 37 37 H 1.00903 * 111.00153 * 84.03303 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5632 -0.8480 1.1788 6 1 3.9935 0.1493 1.0876 7 6 4.0592 -1.4766 2.4629 8 8 5.3849 -0.9159 2.7465 9 6 6.3770 -1.2974 2.0146 10 8 7.3614 -1.7701 2.5316 11 6 6.3087 -1.1520 0.4981 12 6 5.2913 -2.1521 -0.0086 13 1 5.3226 -3.0367 0.6276 14 6 5.6655 -2.5553 -1.4117 15 1 4.9562 -2.4309 -2.2166 16 6 6.9132 -3.0830 -1.6677 17 7 7.7768 -3.2349 -0.6875 18 14 7.3773 -3.5821 -3.4070 19 1 7.2985 -2.3979 -4.2996 20 1 8.7623 -4.1177 -3.4154 21 1 6.4397 -4.6282 -3.8886 22 7 3.9185 -1.6254 -0.0184 23 1 -0.3634 0.5764 -0.8508 24 1 -0.3633 -1.0250 -0.0737 25 1 -0.3634 0.4487 0.9246 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.5949 -1.7148 1.3023 31 1 1.7635 -0.1513 2.1362 32 1 4.1328 -2.5573 2.3415 33 1 3.3758 -1.2418 3.2790 34 1 7.2848 -1.3632 0.0615 35 1 5.9961 -0.1410 0.2367 36 1 8.6544 -3.6065 -0.8676 37 1 3.7400 -1.0968 -0.8591 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259502073.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:42 Heat of formation + Delta-G solvation = -88.881081 kcal Electronic energy + Delta-G solvation = -18510.443211 eV Core-core repulsion = 15673.649118 eV Total energy + Delta-G solvation = -2836.794093 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.31278 -37.63855 -35.96515 -35.14504 -32.73600 -30.68735 -27.77154 -27.11845 -26.36255 -25.72489 -22.27213 -20.44445 -20.08578 -18.89490 -17.03236 -16.39686 -15.98629 -15.62581 -15.27166 -14.69958 -14.59865 -13.93572 -13.78403 -13.08838 -12.64678 -12.23038 -12.16768 -11.99318 -11.83786 -11.61495 -11.50907 -11.31046 -11.04906 -10.82276 -10.68235 -10.49524 -10.43800 -10.39574 -10.14245 -9.72778 -9.63076 -8.71187 -8.48284 -7.50039 -6.11404 -4.25029 2.63196 3.25938 3.32102 3.33170 4.16998 4.30302 4.82306 4.86737 4.98553 5.08025 5.14485 5.35408 5.39025 5.50400 5.58409 5.68089 5.73908 5.83901 5.88071 5.95502 6.04981 6.09871 6.21182 6.30460 6.34278 6.50002 6.57496 6.66724 7.07565 7.47246 7.62684 7.89861 8.03435 8.28675 8.42267 8.53441 8.82929 9.42388 10.90794 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.020705 B = 0.008687 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.028231 B = 3222.475791 C = 4267.272036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.150 4.150 4 C -0.102 4.102 5 C 0.052 3.948 6 H 0.047 0.953 7 C 0.095 3.905 8 O -0.399 6.399 9 C 0.485 3.515 10 O -0.476 6.476 11 C -0.182 4.182 12 C 0.221 3.779 13 H 0.036 0.964 14 C -0.521 4.521 15 H 0.065 0.935 16 C 0.060 3.940 17 N -0.877 5.877 18 Si 0.901 3.099 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 N -0.687 5.687 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.138 0.862 35 H 0.057 0.943 36 H 0.267 0.733 37 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.766 6.638 1.878 13.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.207 4.207 4 C -0.140 4.140 5 C -0.058 4.058 6 H 0.065 0.935 7 C 0.023 3.977 8 O -0.320 6.320 9 C 0.327 3.673 10 O -0.359 6.359 11 C -0.223 4.223 12 C 0.113 3.887 13 H 0.054 0.946 14 C -0.559 4.559 15 H 0.084 0.916 16 C -0.144 4.144 17 N -0.514 5.514 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 N -0.320 5.320 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.127 0.873 34 H 0.155 0.845 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.326 5.885 2.581 13.022 hybrid contribution 0.807 0.477 -1.212 1.532 sum -10.520 6.363 1.369 12.370 Atomic orbital electron populations 1.21815 0.95654 1.01521 1.01127 1.21102 0.95198 0.95920 0.99433 1.21908 1.01380 0.96261 1.01152 1.21674 0.94215 1.00810 0.97329 1.21787 0.95700 0.96532 0.91788 0.93482 1.23241 0.78404 0.98701 0.97393 1.84909 1.19151 1.65877 1.62036 1.23032 0.81583 0.72367 0.90342 1.90543 1.34077 1.34735 1.76580 1.23220 1.09501 1.00213 0.89339 1.18736 0.80244 0.91736 0.98026 0.94602 1.21060 0.99372 1.42712 0.92779 0.91647 1.25019 0.96344 0.95431 0.97570 1.69897 1.07035 1.43316 1.31153 0.86511 0.77572 0.78957 0.84111 1.20213 1.21198 1.20114 1.60187 1.27317 1.42020 1.02508 0.93097 0.92712 0.93173 0.90080 0.92481 0.93070 0.93083 0.91047 0.92164 0.90275 0.87332 0.84467 0.92475 0.92259 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.19 37.16 0.34 -1.08 16 2 C -0.10 -1.14 2.73 -90.62 -0.25 -1.38 16 3 C -0.15 -1.67 8.96 37.16 0.33 -1.33 16 4 C -0.10 -1.26 4.17 -26.73 -0.11 -1.37 16 5 C 0.05 0.82 1.93 -68.44 -0.13 0.69 16 6 H 0.05 0.77 5.66 -51.93 -0.29 0.48 16 7 C 0.10 1.56 6.13 36.32 0.22 1.78 16 8 O -0.40 -8.20 9.94 -28.64 -0.28 -8.48 16 9 C 0.49 11.58 6.80 36.90 0.25 11.83 16 10 O -0.48 -12.98 17.93 -19.00 -0.34 -13.32 16 11 C -0.18 -4.31 4.89 -27.79 -0.14 -4.44 16 12 C 0.22 5.20 2.11 -69.59 -0.15 5.05 16 13 H 0.04 0.97 7.03 -51.93 -0.37 0.60 16 14 C -0.52 -13.39 8.58 -34.44 -0.30 -13.68 16 15 H 0.07 1.63 7.68 -52.49 -0.40 1.23 16 16 C 0.06 1.58 5.09 -17.82 -0.09 1.49 16 17 N -0.88 -24.68 11.18 55.43 0.62 -24.06 16 18 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 N -0.69 -12.95 5.99 -102.45 -0.61 -13.56 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.08 1.06 6.59 -51.93 -0.34 0.72 16 27 H 0.06 0.71 6.53 -51.93 -0.34 0.37 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.64 7.99 -51.93 -0.42 0.23 16 32 H 0.08 1.40 7.26 -51.93 -0.38 1.02 16 33 H 0.11 1.35 7.67 -51.93 -0.40 0.96 16 34 H 0.14 3.72 5.47 -51.93 -0.28 3.43 16 35 H 0.06 1.23 7.50 -51.93 -0.39 0.84 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.34 6.24 6.87 -39.29 -0.27 5.97 16 LS Contribution 289.89 15.07 4.37 4.37 Total: -1.00 -29.32 289.89 -6.83 -36.16 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.55 Total: 5.82 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -0.01 Total: -2.45 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.01 Total: -37.62 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.63 Total: -21.80 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.32 -6.83 -36.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259502073.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.725 kcal (2) G-P(sol) polarization free energy of solvation -29.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds