Wall clock time and date at job start Mon Mar 30 2020 03:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46868 * 2 1 4 4 C 1.52999 * 109.47441 * 120.00015 * 2 1 3 5 5 C 1.52998 * 109.47213 * 174.23225 * 4 2 1 6 6 H 1.08996 * 108.72651 * 57.86008 * 5 4 2 7 7 C 1.51335 * 108.76235 * 176.14253 * 5 4 2 8 8 O 1.46706 * 107.54582 * 212.42624 * 7 5 4 9 9 C 1.29058 * 118.16589 * 287.21255 * 8 7 5 10 10 O 1.20816 * 119.95868 * 235.40011 * 9 8 7 11 11 C 1.52502 * 120.08760 * 55.42391 * 9 8 7 12 12 C 1.51403 * 107.45188 * 289.96513 * 11 9 8 13 13 H 1.09006 * 108.74794 * 326.75015 * 12 11 9 14 14 C 1.50704 * 108.75193 * 208.64615 * 12 11 9 15 15 H 1.07999 * 119.99935 * 236.38898 * 14 12 11 16 16 C 1.37867 * 120.00254 * 56.38776 * 14 12 11 17 17 N 1.31523 * 120.00310 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 120.00269 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47272 * 59.99792 * 18 16 14 20 20 H 1.48502 * 109.47249 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46773 * 299.99939 * 18 16 14 22 22 N 1.47038 * 113.14344 * 87.69723 * 12 11 9 23 23 H 1.09003 * 109.47493 * 55.88475 * 1 2 3 24 24 H 1.08998 * 109.47050 * 175.88924 * 1 2 3 25 25 H 1.09007 * 109.47136 * 295.88636 * 1 2 3 26 26 H 1.08996 * 109.47068 * 240.00334 * 2 1 3 27 27 H 1.09000 * 109.47010 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47749 * 300.00302 * 3 2 1 29 29 H 1.09005 * 109.46972 * 60.00227 * 3 2 1 30 30 H 1.09001 * 109.46974 * 54.23174 * 4 2 1 31 31 H 1.09000 * 109.46760 * 294.23705 * 4 2 1 32 32 H 1.09001 * 109.84121 * 92.91286 * 7 5 4 33 33 H 1.09004 * 109.89731 * 331.97104 * 7 5 4 34 34 H 1.08996 * 109.86231 * 170.48053 * 11 9 8 35 35 H 1.09001 * 109.86414 * 49.45036 * 11 9 8 36 36 H 0.96988 * 120.00488 * 179.97438 * 17 16 14 37 37 H 1.00903 * 111.00153 * 84.03303 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5632 -0.8480 1.1788 6 1 3.9935 0.1493 1.0876 7 6 4.0592 -1.4766 2.4629 8 8 5.3849 -0.9159 2.7465 9 6 6.3770 -1.2974 2.0146 10 8 7.3614 -1.7701 2.5316 11 6 6.3087 -1.1520 0.4981 12 6 5.2913 -2.1521 -0.0086 13 1 5.3226 -3.0367 0.6276 14 6 5.6655 -2.5553 -1.4117 15 1 4.9562 -2.4309 -2.2166 16 6 6.9132 -3.0830 -1.6677 17 7 7.7768 -3.2349 -0.6875 18 14 7.3773 -3.5821 -3.4070 19 1 7.2985 -2.3979 -4.2996 20 1 8.7623 -4.1177 -3.4154 21 1 6.4397 -4.6282 -3.8886 22 7 3.9185 -1.6254 -0.0184 23 1 -0.3634 0.5764 -0.8508 24 1 -0.3633 -1.0250 -0.0737 25 1 -0.3634 0.4487 0.9246 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.5949 -1.7148 1.3023 31 1 1.7635 -0.1513 2.1362 32 1 4.1328 -2.5573 2.3415 33 1 3.3758 -1.2418 3.2790 34 1 7.2848 -1.3632 0.0615 35 1 5.9961 -0.1410 0.2367 36 1 8.6544 -3.6065 -0.8676 37 1 3.7400 -1.0968 -0.8591 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259502073.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:42 Heat of formation + Delta-G solvation = -107.397196 kcal Electronic energy + Delta-G solvation = -18511.246130 eV Core-core repulsion = 15673.649118 eV Total energy + Delta-G solvation = -2837.597012 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.04654 -39.09308 -37.66403 -36.70812 -34.39850 -32.33496 -29.44273 -28.08378 -27.83884 -27.25350 -23.89888 -22.09614 -21.47319 -20.14535 -18.89518 -18.18471 -17.68484 -17.35206 -16.76978 -16.49109 -15.96682 -15.20387 -14.99398 -14.64787 -14.10396 -13.72837 -13.44899 -13.29742 -13.27703 -13.22419 -12.93649 -12.77981 -12.49245 -12.41443 -12.26593 -12.10619 -11.92716 -11.60036 -11.45053 -11.27464 -11.08854 -10.65972 -10.46946 -9.08278 -8.14196 -6.34664 0.83590 1.44395 1.45580 1.53719 2.39668 2.46158 3.10283 3.38094 3.52546 3.79158 3.96877 4.12708 4.20968 4.31977 4.38954 4.42868 4.62037 4.70432 4.81361 4.91832 4.93123 5.00244 5.11806 5.17604 5.22934 5.26925 5.45241 5.53859 5.59415 5.63518 5.67361 6.02536 6.25298 6.48988 6.62901 6.73302 6.89798 7.37952 8.86742 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.020705 B = 0.008687 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.028231 B = 3222.475791 C = 4267.272036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.093 4.093 5 C 0.051 3.949 6 H 0.048 0.952 7 C 0.088 3.912 8 O -0.398 6.398 9 C 0.494 3.506 10 O -0.521 6.521 11 C -0.174 4.174 12 C 0.232 3.768 13 H -0.004 1.004 14 C -0.531 4.531 15 H 0.072 0.928 16 C 0.010 3.990 17 N -0.911 5.911 18 Si 0.965 3.035 19 H -0.266 1.266 20 H -0.291 1.291 21 H -0.271 1.271 22 N -0.682 5.682 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.159 0.841 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.263 0.737 37 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.109 7.729 1.577 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.131 4.131 5 C -0.058 4.058 6 H 0.065 0.935 7 C 0.017 3.983 8 O -0.318 6.318 9 C 0.338 3.662 10 O -0.408 6.408 11 C -0.215 4.215 12 C 0.123 3.877 13 H 0.014 0.986 14 C -0.569 4.569 15 H 0.090 0.910 16 C -0.190 4.190 17 N -0.550 5.550 18 Si 0.790 3.210 19 H -0.190 1.190 20 H -0.216 1.216 21 H -0.196 1.196 22 N -0.316 5.316 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.177 0.823 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.729 6.998 2.270 15.576 hybrid contribution 1.423 0.173 -1.083 1.797 sum -12.306 7.171 1.186 14.292 Atomic orbital electron populations 1.21766 0.94017 1.01767 1.02118 1.21083 0.96532 0.95864 0.98199 1.21888 1.00267 0.96138 1.02207 1.21644 0.90905 1.01576 0.98984 1.21926 0.98353 0.95594 0.89950 0.93463 1.23769 0.76851 0.97849 0.99816 1.84887 1.20102 1.65344 1.61461 1.22964 0.81747 0.71149 0.90362 1.90523 1.35874 1.37157 1.77229 1.23039 1.07850 1.01268 0.89368 1.18388 0.82528 0.90614 0.96155 0.98613 1.21444 0.99433 1.42113 0.93917 0.91027 1.25824 0.96445 0.95534 1.01160 1.70074 1.07198 1.44462 1.33238 0.85497 0.76860 0.78868 0.79731 1.19047 1.21648 1.19576 1.60070 1.24072 1.43207 1.04249 0.92528 0.92818 0.91865 0.91932 0.94122 0.92395 0.91752 0.90945 0.89352 0.91901 0.82304 0.87779 0.90450 0.92780 0.83236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.19 71.98 0.66 -1.62 16 2 C -0.10 -1.99 2.73 -10.79 -0.03 -2.02 16 3 C -0.15 -2.86 8.96 71.98 0.64 -2.22 16 4 C -0.09 -1.97 4.17 30.59 0.13 -1.84 16 5 C 0.05 1.50 1.93 44.33 0.09 1.59 16 6 H 0.05 1.44 5.66 -2.39 -0.01 1.42 16 7 C 0.09 2.71 6.13 71.44 0.44 3.15 16 8 O -0.40 -16.00 9.94 -12.23 -0.12 -16.12 16 9 C 0.49 24.00 6.80 71.82 0.49 24.49 16 10 O -0.52 -29.38 17.93 22.24 0.40 -28.98 16 11 C -0.17 -8.40 4.89 29.91 0.15 -8.25 16 12 C 0.23 11.11 2.11 43.62 0.09 11.20 16 13 H 0.00 -0.22 7.03 -2.38 -0.02 -0.23 16 14 C -0.53 -27.48 8.58 25.60 0.22 -27.26 16 15 H 0.07 3.54 7.68 -2.91 -0.02 3.51 16 16 C 0.01 0.55 5.09 84.65 0.43 0.99 16 17 N -0.91 -52.97 11.18 21.45 0.24 -52.73 16 18 Si 0.97 42.43 29.54 68.60 2.03 44.46 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 N -0.68 -25.16 5.99 -478.05 -2.86 -28.02 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.88 8.14 -2.38 -0.02 0.87 16 26 H 0.06 1.51 6.59 -2.39 -0.02 1.49 16 27 H 0.04 0.91 6.53 -2.39 -0.02 0.90 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.44 7.99 -2.39 -0.02 1.42 16 32 H 0.06 2.18 7.26 -2.39 -0.02 2.16 16 33 H 0.16 3.30 7.67 -2.38 -0.02 3.28 16 34 H 0.10 5.84 5.47 -2.39 -0.01 5.83 16 35 H 0.08 3.33 7.50 -2.39 -0.02 3.31 16 36 H 0.26 14.82 8.31 -92.72 -0.77 14.05 16 37 H 0.35 12.30 6.87 -89.69 -0.62 11.69 16 Total: -1.00 -65.07 289.89 3.43 -61.63 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.45 Total: 21.56 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 3.31 Total: -1.81 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -2.62 Total: -80.75 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: 0.28 Total: -45.09 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -65.07 3.43 -61.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259502073.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.764 kcal (2) G-P(sol) polarization free energy of solvation -65.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds