Wall clock time and date at job start Mon Mar 30 2020 03:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46852 * 2 1 4 4 C 1.53002 * 109.46812 * 119.99826 * 2 1 3 5 5 C 1.53000 * 109.46920 * 174.99922 * 4 2 1 6 6 H 1.09001 * 109.32303 * 55.22589 * 5 4 2 7 7 C 1.51230 * 109.39914 * 175.00217 * 5 4 2 8 8 O 1.46523 * 109.33197 * 209.58985 * 7 5 4 9 9 C 1.35648 * 117.05176 * 321.07543 * 8 7 5 10 10 O 1.20816 * 118.87845 * 139.60455 * 9 8 7 11 11 C 1.49181 * 122.24057 * 319.58454 * 9 8 7 12 12 C 1.54545 * 109.71065 * 86.85474 * 11 9 8 13 13 H 1.08999 * 109.39687 * 52.05417 * 12 11 9 14 14 C 1.50702 * 109.39390 * 171.77579 * 12 11 9 15 15 H 1.08009 * 119.99571 * 119.99984 * 14 12 11 16 16 C 1.37875 * 120.00448 * 299.99942 * 14 12 11 17 17 N 1.31509 * 120.00193 * 179.97438 * 16 14 12 18 18 Si 1.86807 * 119.99654 * 359.97438 * 16 14 12 19 19 H 1.48504 * 109.46775 * 90.00108 * 18 16 14 20 20 H 1.48493 * 109.47190 * 209.99811 * 18 16 14 21 21 H 1.48503 * 109.47081 * 330.00355 * 18 16 14 22 22 N 1.42160 * 109.92464 * 291.91383 * 12 11 9 23 23 H 1.08994 * 109.47129 * 299.99730 * 1 2 3 24 24 H 1.09001 * 109.47142 * 59.99962 * 1 2 3 25 25 H 1.09002 * 109.46865 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47044 * 239.99817 * 2 1 3 27 27 H 1.09003 * 109.46817 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47549 * 299.99779 * 3 2 1 29 29 H 1.09007 * 109.47128 * 59.99998 * 3 2 1 30 30 H 1.09000 * 109.46947 * 55.00432 * 4 2 1 31 31 H 1.08995 * 109.47664 * 295.00172 * 4 2 1 32 32 H 1.09002 * 109.50019 * 89.62431 * 7 5 4 33 33 H 1.09000 * 109.49608 * 329.55695 * 7 5 4 34 34 H 1.09005 * 109.42845 * 206.92736 * 11 9 8 35 35 H 1.09003 * 109.43115 * 326.82756 * 11 9 8 36 36 H 0.97005 * 119.99816 * 179.97438 * 17 16 14 37 37 H 1.00900 * 111.00400 * 191.41659 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8311 1.1880 6 1 3.9930 0.1627 1.0568 7 6 4.0773 -1.4325 2.4775 8 8 5.4244 -0.9237 2.7483 9 6 6.2545 -0.7789 1.6853 10 8 6.9668 0.1953 1.6296 11 6 6.3181 -1.7820 0.5829 12 6 5.2443 -1.4571 -0.4801 13 1 5.3388 -0.4144 -0.7832 14 6 5.4440 -2.3455 -1.6809 15 1 4.6571 -3.0162 -1.9932 16 6 6.6310 -2.3020 -2.3809 17 7 6.8054 -3.0776 -3.4286 18 14 7.9916 -1.1413 -1.8412 19 1 8.8768 -1.8338 -0.8705 20 1 8.7853 -0.7246 -3.0250 21 1 7.3942 0.0570 -1.1989 22 7 3.9472 -1.6763 0.0589 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6054 -1.7198 1.2952 31 1 1.7516 -0.1584 2.1370 32 1 4.1103 -2.5181 2.3848 33 1 3.4129 -1.1573 3.2966 34 1 7.3054 -1.7520 0.1219 35 1 6.1370 -2.7777 0.9877 36 1 7.6404 -3.0467 -3.9213 37 1 3.2455 -1.6507 -0.6657 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259502075.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:44 Heat of formation + Delta-G solvation = -88.322222 kcal Electronic energy + Delta-G solvation = -18659.988278 eV Core-core repulsion = 15823.218419 eV Total energy + Delta-G solvation = -2836.769859 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.23186 -37.90147 -36.18006 -35.35001 -32.74491 -31.27650 -28.49788 -27.18303 -26.33592 -26.01426 -22.32006 -20.69363 -19.67152 -19.53087 -17.26538 -16.88979 -16.47740 -15.44272 -15.14704 -15.06018 -14.71697 -14.19157 -13.90273 -13.35421 -12.96373 -12.74195 -12.46139 -12.38762 -12.27339 -12.01197 -11.60855 -11.53761 -11.22799 -10.83762 -10.74845 -10.58321 -10.43805 -10.32437 -10.07542 -10.00379 -9.59273 -9.14977 -8.74161 -7.65134 -6.25707 -4.28471 2.40589 3.20011 3.32303 3.44140 3.66912 4.26841 4.55056 4.65452 4.82180 4.93822 4.95040 5.13791 5.33443 5.33949 5.37503 5.61023 5.64664 5.65792 5.76997 5.84123 5.86416 5.94186 6.00008 6.07428 6.11273 6.19391 6.31951 6.39144 6.43652 6.91789 7.30657 7.47758 7.84106 7.98587 8.13176 8.46473 8.80085 9.35061 10.85529 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021637 B = 0.009564 C = 0.007714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.762797 B = 2926.944769 C = 3629.022380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.151 4.151 4 C -0.110 4.110 5 C 0.051 3.949 6 H 0.050 0.950 7 C 0.081 3.919 8 O -0.389 6.389 9 C 0.481 3.519 10 O -0.483 6.483 11 C -0.172 4.172 12 C 0.221 3.779 13 H -0.001 1.001 14 C -0.516 4.516 15 H 0.088 0.912 16 C 0.079 3.921 17 N -0.886 5.886 18 Si 0.868 3.132 19 H -0.274 1.274 20 H -0.290 1.290 21 H -0.256 1.256 22 N -0.694 5.694 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.268 0.732 37 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.673 4.057 8.598 14.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.208 4.208 4 C -0.148 4.148 5 C -0.059 4.059 6 H 0.068 0.932 7 C 0.007 3.993 8 O -0.310 6.310 9 C 0.324 3.676 10 O -0.366 6.366 11 C -0.211 4.211 12 C 0.111 3.889 13 H 0.016 0.984 14 C -0.553 4.553 15 H 0.106 0.894 16 C -0.125 4.125 17 N -0.522 5.522 18 Si 0.697 3.303 19 H -0.201 1.201 20 H -0.217 1.217 21 H -0.180 1.180 22 N -0.330 5.330 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.925 4.090 8.977 13.993 hybrid contribution 0.801 1.145 -0.307 1.431 sum -9.124 5.235 8.670 13.631 Atomic orbital electron populations 1.21802 0.95053 1.01727 1.01476 1.21173 0.95751 0.96435 0.98757 1.21906 1.01459 0.95978 1.01450 1.21740 0.93319 1.01433 0.98259 1.21723 0.96132 0.95462 0.92621 0.93188 1.23364 0.78545 0.99999 0.97414 1.86794 1.25750 1.82248 1.36158 1.23757 0.77490 0.85976 0.80369 1.90550 1.41498 1.30876 1.73659 1.22959 1.04188 0.98813 0.95125 1.18674 0.83412 0.96012 0.90820 0.98388 1.20835 1.02838 1.23309 1.08351 0.89437 1.24914 0.98137 0.94946 0.94541 1.69857 1.26173 1.37881 1.18333 0.87141 0.82683 0.82810 0.77706 1.20075 1.21659 1.17999 1.57165 1.05583 1.57392 1.12903 0.92969 0.92775 0.92527 0.90382 0.92525 0.92715 0.92878 0.90421 0.91254 0.89557 0.88065 0.89027 0.88323 0.92180 0.82052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.19 37.16 0.34 -1.02 16 2 C -0.10 -1.19 2.82 -90.62 -0.26 -1.44 16 3 C -0.15 -1.83 8.95 37.16 0.33 -1.49 16 4 C -0.11 -1.26 4.11 -26.73 -0.11 -1.37 16 5 C 0.05 0.77 1.98 -69.02 -0.14 0.64 16 6 H 0.05 0.88 5.53 -51.93 -0.29 0.60 16 7 C 0.08 1.18 6.41 36.27 0.23 1.41 16 8 O -0.39 -7.35 10.64 -43.34 -0.46 -7.81 16 9 C 0.48 10.52 6.14 35.28 0.22 10.73 16 10 O -0.48 -11.94 17.88 -18.74 -0.34 -12.28 16 11 C -0.17 -3.82 4.45 -27.80 -0.12 -3.95 16 12 C 0.22 5.01 1.85 -70.54 -0.13 4.88 16 13 H 0.00 -0.03 7.15 -51.93 -0.37 -0.40 16 14 C -0.52 -13.57 9.21 -34.44 -0.32 -13.89 16 15 H 0.09 2.45 8.06 -52.48 -0.42 2.03 16 16 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 17 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 18 Si 0.87 21.81 24.42 -169.99 -4.15 17.66 16 19 H -0.27 -6.76 6.79 56.52 0.38 -6.38 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.26 -6.55 6.53 56.52 0.37 -6.18 16 22 N -0.69 -12.70 5.61 -104.71 -0.59 -13.28 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.02 6.30 -51.93 -0.33 0.70 16 27 H 0.06 0.81 6.46 -51.93 -0.34 0.48 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.69 7.98 -51.93 -0.41 0.27 16 32 H 0.09 1.22 8.03 -51.93 -0.42 0.80 16 33 H 0.10 1.12 7.70 -51.93 -0.40 0.72 16 34 H 0.09 2.21 3.25 -51.93 -0.17 2.04 16 35 H 0.10 2.04 8.14 -51.93 -0.42 1.61 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.36 6.27 6.15 -39.29 -0.24 6.02 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -30.40 285.41 -6.04 -36.44 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.53 Total: 3.49 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -0.05 Total: -3.41 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.19 Total: -38.39 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.80 Total: -20.09 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.15 Total: 17.66 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.40 -6.04 -36.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259502075.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.881 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds