Wall clock time and date at job start Mon Mar 30 2020 03:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46852 * 2 1 4 4 C 1.53002 * 109.46812 * 119.99826 * 2 1 3 5 5 C 1.53000 * 109.46920 * 174.99922 * 4 2 1 6 6 H 1.09001 * 109.32303 * 55.22589 * 5 4 2 7 7 C 1.51230 * 109.39914 * 175.00217 * 5 4 2 8 8 O 1.46523 * 109.33197 * 209.58985 * 7 5 4 9 9 C 1.35648 * 117.05176 * 321.07543 * 8 7 5 10 10 O 1.20816 * 118.87845 * 139.60455 * 9 8 7 11 11 C 1.49181 * 122.24057 * 319.58454 * 9 8 7 12 12 C 1.54545 * 109.71065 * 86.85474 * 11 9 8 13 13 H 1.08999 * 109.39687 * 52.05417 * 12 11 9 14 14 C 1.50702 * 109.39390 * 171.77579 * 12 11 9 15 15 H 1.08009 * 119.99571 * 119.99984 * 14 12 11 16 16 C 1.37875 * 120.00448 * 299.99942 * 14 12 11 17 17 N 1.31509 * 120.00193 * 179.97438 * 16 14 12 18 18 Si 1.86807 * 119.99654 * 359.97438 * 16 14 12 19 19 H 1.48504 * 109.46775 * 90.00108 * 18 16 14 20 20 H 1.48493 * 109.47190 * 209.99811 * 18 16 14 21 21 H 1.48503 * 109.47081 * 330.00355 * 18 16 14 22 22 N 1.42160 * 109.92464 * 291.91383 * 12 11 9 23 23 H 1.08994 * 109.47129 * 299.99730 * 1 2 3 24 24 H 1.09001 * 109.47142 * 59.99962 * 1 2 3 25 25 H 1.09002 * 109.46865 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47044 * 239.99817 * 2 1 3 27 27 H 1.09003 * 109.46817 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47549 * 299.99779 * 3 2 1 29 29 H 1.09007 * 109.47128 * 59.99998 * 3 2 1 30 30 H 1.09000 * 109.46947 * 55.00432 * 4 2 1 31 31 H 1.08995 * 109.47664 * 295.00172 * 4 2 1 32 32 H 1.09002 * 109.50019 * 89.62431 * 7 5 4 33 33 H 1.09000 * 109.49608 * 329.55695 * 7 5 4 34 34 H 1.09005 * 109.42845 * 206.92736 * 11 9 8 35 35 H 1.09003 * 109.43115 * 326.82756 * 11 9 8 36 36 H 0.97005 * 119.99816 * 179.97438 * 17 16 14 37 37 H 1.00900 * 111.00400 * 191.41659 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8311 1.1880 6 1 3.9930 0.1627 1.0568 7 6 4.0773 -1.4325 2.4775 8 8 5.4244 -0.9237 2.7483 9 6 6.2545 -0.7789 1.6853 10 8 6.9668 0.1953 1.6296 11 6 6.3181 -1.7820 0.5829 12 6 5.2443 -1.4571 -0.4801 13 1 5.3388 -0.4144 -0.7832 14 6 5.4440 -2.3455 -1.6809 15 1 4.6571 -3.0162 -1.9932 16 6 6.6310 -2.3020 -2.3809 17 7 6.8054 -3.0776 -3.4286 18 14 7.9916 -1.1413 -1.8412 19 1 8.8768 -1.8338 -0.8705 20 1 8.7853 -0.7246 -3.0250 21 1 7.3942 0.0570 -1.1989 22 7 3.9472 -1.6763 0.0589 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6054 -1.7198 1.2952 31 1 1.7516 -0.1584 2.1370 32 1 4.1103 -2.5181 2.3848 33 1 3.4129 -1.1573 3.2966 34 1 7.3054 -1.7520 0.1219 35 1 6.1370 -2.7777 0.9877 36 1 7.6404 -3.0467 -3.9213 37 1 3.2455 -1.6507 -0.6657 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259502075.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:44 Heat of formation + Delta-G solvation = -109.308641 kcal Electronic energy + Delta-G solvation = -18660.898318 eV Core-core repulsion = 15823.218419 eV Total energy + Delta-G solvation = -2837.679899 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.82114 -39.31514 -37.69191 -36.83466 -34.54228 -32.90280 -30.03276 -28.14281 -28.02079 -27.25507 -23.89539 -22.22288 -21.21223 -20.63288 -19.05078 -18.68204 -18.12458 -16.97565 -16.71609 -16.56818 -16.21297 -15.45261 -15.30284 -14.89119 -14.62214 -14.35014 -13.86630 -13.81466 -13.46897 -13.13451 -13.04148 -12.90257 -12.52189 -12.40207 -12.30113 -12.04519 -11.89058 -11.62970 -11.53415 -11.43846 -11.25800 -10.98413 -10.83996 -9.22793 -8.42850 -6.46609 0.72689 1.17630 1.27539 1.39511 2.11243 2.17343 2.88409 3.16717 3.28738 3.68932 3.82697 4.00006 4.07974 4.16091 4.20830 4.28666 4.35975 4.45411 4.64752 4.74668 4.80242 4.86229 4.94401 5.00130 5.04002 5.10737 5.15316 5.35054 5.37496 5.45793 5.51214 5.87792 5.98579 6.27696 6.48380 6.64609 6.69245 7.20785 8.72159 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021637 B = 0.009564 C = 0.007714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.762797 B = 2926.944769 C = 3629.022380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C -0.150 4.150 4 C -0.100 4.100 5 C 0.049 3.951 6 H 0.028 0.972 7 C 0.074 3.926 8 O -0.388 6.388 9 C 0.492 3.508 10 O -0.518 6.518 11 C -0.170 4.170 12 C 0.232 3.768 13 H -0.026 1.026 14 C -0.509 4.509 15 H 0.065 0.935 16 C 0.038 3.962 17 N -0.925 5.925 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.267 1.267 22 N -0.690 5.690 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.026 0.974 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.149 0.851 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.271 0.729 37 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.429 4.206 10.687 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 C -0.207 4.207 4 C -0.138 4.138 5 C -0.061 4.061 6 H 0.046 0.954 7 C 0.001 3.999 8 O -0.308 6.308 9 C 0.336 3.664 10 O -0.404 6.404 11 C -0.209 4.209 12 C 0.121 3.879 13 H -0.008 1.008 14 C -0.547 4.547 15 H 0.083 0.917 16 C -0.162 4.162 17 N -0.564 5.564 18 Si 0.743 3.257 19 H -0.192 1.192 20 H -0.213 1.213 21 H -0.192 1.192 22 N -0.327 5.327 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.167 0.833 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.710 4.225 11.088 16.671 hybrid contribution 1.211 1.078 -0.922 1.865 sum -10.499 5.303 10.165 15.546 Atomic orbital electron populations 1.21746 0.92965 1.02472 1.02267 1.21174 0.97424 0.95648 0.98049 1.21901 0.99462 0.96872 1.02461 1.21742 0.89967 1.02822 0.99225 1.21887 0.98999 0.93648 0.91550 0.95429 1.23858 0.76849 1.00628 0.98562 1.86797 1.27156 1.82240 1.34590 1.23515 0.77354 0.84999 0.80497 1.90535 1.43067 1.31918 1.74848 1.22827 1.02810 1.00035 0.95267 1.18306 0.85965 0.93573 0.90047 1.00849 1.21048 1.01734 1.22563 1.09339 0.91652 1.25454 1.00014 0.96049 0.94723 1.69941 1.27002 1.39737 1.19697 0.86382 0.80948 0.80977 0.77391 1.19247 1.21283 1.19182 1.57123 1.03774 1.58155 1.13646 0.91435 0.92796 0.91805 0.92620 0.95518 0.92515 0.91137 0.88826 0.88438 0.88534 0.83304 0.90877 0.86590 0.91974 0.81776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.19 71.98 0.66 -1.52 16 2 C -0.10 -2.19 2.82 -10.79 -0.03 -2.22 16 3 C -0.15 -3.43 8.95 71.98 0.64 -2.79 16 4 C -0.10 -1.93 4.11 30.59 0.13 -1.80 16 5 C 0.05 1.38 1.98 44.48 0.09 1.47 16 6 H 0.03 0.95 5.53 -2.39 -0.01 0.94 16 7 C 0.07 1.87 6.41 71.40 0.46 2.32 16 8 O -0.39 -13.67 10.64 -66.02 -0.70 -14.38 16 9 C 0.49 21.04 6.14 70.77 0.43 21.47 16 10 O -0.52 -25.52 17.88 21.99 0.39 -25.13 16 11 C -0.17 -7.48 4.45 29.90 0.13 -7.34 16 12 C 0.23 10.55 1.85 45.57 0.08 10.63 16 13 H -0.03 -1.29 7.15 -2.39 -0.02 -1.30 16 14 C -0.51 -27.18 9.21 25.60 0.24 -26.95 16 15 H 0.07 3.74 8.06 -2.91 -0.02 3.71 16 16 C 0.04 2.15 5.45 84.65 0.46 2.61 16 17 N -0.92 -55.00 13.96 21.45 0.30 -54.70 16 18 Si 0.91 45.85 24.42 68.60 1.67 47.52 16 19 H -0.27 -12.89 6.79 99.48 0.68 -12.21 16 20 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 21 H -0.27 -13.77 6.53 99.48 0.65 -13.13 16 22 N -0.69 -24.60 5.61 -485.18 -2.72 -27.33 16 23 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.42 6.30 -2.39 -0.02 1.40 16 27 H 0.03 0.76 6.46 -2.39 -0.02 0.74 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.34 8.14 -2.38 -0.02 1.33 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 1.41 7.98 -2.39 -0.02 1.39 16 32 H 0.10 2.33 8.03 -2.39 -0.02 2.31 16 33 H 0.15 2.44 7.70 -2.39 -0.02 2.43 16 34 H 0.07 3.51 3.25 -2.38 -0.01 3.50 16 35 H 0.12 4.62 8.14 -2.39 -0.02 4.60 16 36 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 37 H 0.36 12.46 6.15 -89.69 -0.55 11.91 16 Total: -1.00 -66.68 285.41 2.66 -64.02 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.42 Total: 14.12 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 3.30 Total: -4.12 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -2.42 Total: -82.03 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.31 Total: -39.51 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.67 Total: 47.52 kcal Total: -66.68 2.66 -64.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259502075.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.291 kcal (2) G-P(sol) polarization free energy of solvation -66.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds