Wall clock time and date at job start Mon Mar 30 2020 03:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00138 * 2 1 4 4 H 1.48493 * 109.47071 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47205 * 300.00428 * 3 2 1 6 6 H 1.48497 * 109.46931 * 60.00259 * 3 2 1 7 7 C 1.37883 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99713 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00089 * 359.97438 * 7 2 1 10 10 H 1.09000 * 108.77763 * 66.58381 * 9 7 2 11 11 C 1.54623 * 108.87911 * 308.06905 * 9 7 2 12 12 C 1.54574 * 110.90488 * 198.83919 * 11 9 7 13 13 O 1.39908 * 113.22289 * 319.28086 * 12 11 9 14 14 C 1.44527 * 112.80686 * 94.89769 * 13 12 11 15 15 C 1.46269 * 111.31016 * 280.45520 * 14 13 12 16 16 N 1.44007 * 108.88061 * 185.11040 * 9 7 2 17 17 C 1.46902 * 110.99759 * 337.94427 * 16 9 7 18 18 H 1.09002 * 111.02377 * 325.78193 * 17 16 9 19 19 C 1.55306 * 111.12357 * 90.00568 * 17 16 9 20 20 C 1.54380 * 102.25341 * 152.05553 * 19 17 16 21 21 O 1.43243 * 107.58924 * 338.63741 * 20 19 17 22 22 C 1.43648 * 109.96919 * 358.29507 * 21 20 19 23 23 H 0.97005 * 120.00031 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.19325 * 78.47017 * 11 9 7 25 25 H 1.09002 * 109.15163 * 319.18040 * 11 9 7 26 26 H 1.09001 * 108.73721 * 198.32287 * 12 11 9 27 27 H 1.08995 * 108.73521 * 80.24987 * 12 11 9 28 28 H 1.08994 * 109.11312 * 159.97868 * 14 13 12 29 29 H 1.08998 * 109.06166 * 40.88841 * 14 13 12 30 30 H 1.09000 * 108.91138 * 298.76165 * 15 14 13 31 31 H 1.08992 * 108.84036 * 180.16557 * 15 14 13 32 32 H 1.08997 * 110.85284 * 33.86171 * 19 17 16 33 33 H 1.09003 * 110.84360 * 270.24065 * 19 17 16 34 34 H 1.08998 * 109.82931 * 219.13125 * 20 19 17 35 35 H 1.09002 * 109.83385 * 98.15239 * 20 19 17 36 36 H 1.08993 * 110.31371 * 143.34073 * 22 21 20 37 37 H 1.09002 * 110.30467 * 265.41093 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.7200 -2.5977 -0.9473 11 6 0.2200 -2.4816 1.1517 12 6 -0.2403 -3.9151 1.5018 13 8 -0.4427 -4.7200 0.3755 14 6 0.7130 -5.5227 0.0456 15 6 1.7190 -4.7375 -0.6692 16 7 2.1933 -3.5814 0.1202 17 6 3.5335 -3.1631 -0.3121 18 1 3.4743 -2.4475 -1.1322 19 6 4.3504 -2.5863 0.8762 20 6 5.8033 -2.8954 0.4557 21 8 5.7597 -3.9601 -0.5016 22 6 4.4023 -4.3861 -0.7000 23 1 -0.4850 0.8401 0.0004 24 1 -0.6450 -1.8912 0.8496 25 1 0.6748 -2.0264 2.0315 26 1 -1.1735 -3.8561 2.0620 27 1 0.5156 -4.3810 2.1338 28 1 0.4004 -6.3577 -0.5813 29 1 1.1508 -5.9112 0.9650 30 1 1.2870 -4.3750 -1.6019 31 1 2.5685 -5.3802 -0.8999 32 1 4.0981 -3.0979 1.8050 33 1 4.1938 -1.5116 0.9690 34 1 6.3823 -3.2042 1.3260 35 1 6.2539 -2.0111 0.0050 36 1 4.2377 -4.6511 -1.7443 37 1 4.1738 -5.2343 -0.0546 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259634857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:47 Heat of formation + Delta-G solvation = -53.614891 kcal Electronic energy + Delta-G solvation = -19100.631269 eV Core-core repulsion = 16265.366433 eV Total energy + Delta-G solvation = -2835.264836 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.68576 -38.13840 -35.64492 -33.25451 -31.17729 -30.74677 -28.69201 -27.33694 -26.03428 -23.04594 -22.48355 -20.89505 -20.06242 -19.19654 -16.91799 -16.55769 -15.55902 -15.41108 -15.02799 -14.91358 -14.38907 -14.06995 -13.68655 -13.17998 -12.98687 -12.56480 -12.28802 -11.93775 -11.52816 -11.11846 -11.06128 -10.96295 -10.86533 -10.61070 -10.37107 -10.20202 -9.92133 -9.69457 -9.50629 -9.09737 -9.01011 -8.50182 -8.38118 -7.35333 -6.05629 -4.12927 3.22728 3.31854 3.32629 4.16620 4.34023 4.56831 4.80891 5.12282 5.25980 5.39193 5.54366 5.63475 5.67586 5.76260 5.84604 5.90917 6.03424 6.12201 6.16857 6.24999 6.31817 6.39142 6.41385 6.55323 6.70233 6.81068 6.93883 7.21879 7.32625 7.51558 7.70652 7.80918 8.00668 8.07575 8.31916 8.49661 8.93276 9.52666 10.98494 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.013267 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.395702 B = 2109.987937 C = 3509.795084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.547 4.547 8 H 0.086 0.914 9 C 0.214 3.786 10 H 0.005 0.995 11 C -0.111 4.111 12 C 0.063 3.937 13 O -0.379 6.379 14 C 0.071 3.929 15 C 0.007 3.993 16 N -0.514 5.514 17 C 0.071 3.929 18 H 0.080 0.920 19 C -0.141 4.141 20 C 0.048 3.952 21 O -0.392 6.392 22 C 0.044 3.956 23 H 0.259 0.741 24 H 0.089 0.911 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.037 0.963 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.937 -7.367 1.265 8.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.584 4.584 8 H 0.104 0.896 9 C 0.106 3.894 10 H 0.023 0.977 11 C -0.150 4.150 12 C -0.014 4.014 13 O -0.298 6.298 14 C -0.006 4.006 15 C -0.121 4.121 16 N -0.239 5.239 17 C -0.038 4.038 18 H 0.098 0.902 19 C -0.178 4.178 20 C -0.029 4.029 21 O -0.311 6.311 22 C -0.032 4.032 23 H 0.069 0.931 24 H 0.107 0.893 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.817 -7.463 1.562 9.018 hybrid contribution 0.331 1.419 -0.513 1.545 sum 5.148 -6.044 1.048 8.008 Atomic orbital electron populations 1.69974 1.05895 1.26272 1.49939 1.24972 0.94794 0.99102 0.94862 0.86588 0.80082 0.84013 0.77645 1.19742 1.21096 1.20979 1.22125 0.94424 0.90344 1.51541 0.89647 1.19050 0.89131 0.87230 0.93940 0.97741 1.22613 1.00741 0.92653 0.99040 1.22463 0.98658 0.93530 0.86774 1.87674 1.35721 1.57164 1.49235 1.21567 0.86944 0.92806 0.99261 1.21882 0.98209 0.95288 0.96724 1.61856 1.01806 1.07884 1.52395 1.23145 0.89167 0.94487 0.97014 0.90231 1.23357 0.91653 1.03582 0.99241 1.23177 0.98156 0.89912 0.91653 1.88327 1.26721 1.53373 1.62696 1.23702 0.81710 0.97553 1.00272 0.93058 0.89273 0.93157 0.92713 0.94498 0.90191 0.93172 0.94087 0.91040 0.90459 0.88416 0.92225 0.91881 0.90642 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.46 11.02 55.43 0.61 -23.85 16 2 C 0.07 1.73 5.27 -17.82 -0.09 1.64 16 3 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.55 -13.94 6.97 -34.44 -0.24 -14.18 16 8 H 0.09 2.08 2.87 -52.49 -0.15 1.93 16 9 C 0.21 5.17 2.02 -69.56 -0.14 5.03 16 10 H 0.00 0.14 7.11 -51.93 -0.37 -0.23 16 11 C -0.11 -2.65 5.04 -25.05 -0.13 -2.77 16 12 C 0.06 1.27 6.20 37.98 0.24 1.51 16 13 O -0.38 -7.68 10.39 -32.68 -0.34 -8.02 16 14 C 0.07 1.18 6.38 33.96 0.22 1.40 16 15 C 0.01 0.12 4.89 -6.53 -0.03 0.09 16 16 N -0.51 -10.42 4.17 -221.81 -0.93 -11.35 16 17 C 0.07 1.35 2.24 -65.46 -0.15 1.21 16 18 H 0.08 1.72 6.48 -51.93 -0.34 1.38 16 19 C -0.14 -2.52 5.89 -24.79 -0.15 -2.67 16 20 C 0.05 0.76 7.79 37.88 0.30 1.05 16 21 O -0.39 -6.80 11.36 -35.23 -0.40 -7.20 16 22 C 0.04 0.73 5.57 38.19 0.21 0.94 16 23 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 24 H 0.09 2.36 6.40 -51.93 -0.33 2.03 16 25 H 0.05 1.24 7.98 -51.93 -0.41 0.82 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.04 0.70 7.24 -51.93 -0.38 0.33 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.78 7.46 -51.93 -0.39 0.39 16 30 H 0.04 0.79 7.30 -51.93 -0.38 0.41 16 31 H 0.07 1.07 5.01 -51.93 -0.26 0.81 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.10 1.91 6.05 -51.93 -0.31 1.59 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.15 7.85 -51.93 -0.41 0.74 16 37 H 0.06 0.96 7.24 -51.93 -0.38 0.58 16 LS Contribution 274.08 15.07 4.13 4.13 Total: -1.00 -27.92 274.08 -7.26 -35.18 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.35 Total: 2.38 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 0.03 Total: -6.76 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.32 Total: -35.20 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.74 Total: -15.22 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.92 -7.26 -35.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259634857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.431 kcal (2) G-P(sol) polarization free energy of solvation -27.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds