Wall clock time and date at job start Mon Mar 30 2020 03:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00138 * 2 1 4 4 H 1.48493 * 109.47071 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47205 * 300.00428 * 3 2 1 6 6 H 1.48497 * 109.46931 * 60.00259 * 3 2 1 7 7 C 1.37883 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99713 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00089 * 359.97438 * 7 2 1 10 10 H 1.09000 * 108.77763 * 66.58381 * 9 7 2 11 11 C 1.54623 * 108.87911 * 308.06905 * 9 7 2 12 12 C 1.54574 * 110.90488 * 198.83919 * 11 9 7 13 13 O 1.39908 * 113.22289 * 319.28086 * 12 11 9 14 14 C 1.44527 * 112.80686 * 94.89769 * 13 12 11 15 15 C 1.46269 * 111.31016 * 280.45520 * 14 13 12 16 16 N 1.44007 * 108.88061 * 185.11040 * 9 7 2 17 17 C 1.46902 * 110.99759 * 337.94427 * 16 9 7 18 18 H 1.09002 * 111.02377 * 325.78193 * 17 16 9 19 19 C 1.55306 * 111.12357 * 90.00568 * 17 16 9 20 20 C 1.54380 * 102.25341 * 152.05553 * 19 17 16 21 21 O 1.43243 * 107.58924 * 338.63741 * 20 19 17 22 22 C 1.43648 * 109.96919 * 358.29507 * 21 20 19 23 23 H 0.97005 * 120.00031 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.19325 * 78.47017 * 11 9 7 25 25 H 1.09002 * 109.15163 * 319.18040 * 11 9 7 26 26 H 1.09001 * 108.73721 * 198.32287 * 12 11 9 27 27 H 1.08995 * 108.73521 * 80.24987 * 12 11 9 28 28 H 1.08994 * 109.11312 * 159.97868 * 14 13 12 29 29 H 1.08998 * 109.06166 * 40.88841 * 14 13 12 30 30 H 1.09000 * 108.91138 * 298.76165 * 15 14 13 31 31 H 1.08992 * 108.84036 * 180.16557 * 15 14 13 32 32 H 1.08997 * 110.85284 * 33.86171 * 19 17 16 33 33 H 1.09003 * 110.84360 * 270.24065 * 19 17 16 34 34 H 1.08998 * 109.82931 * 219.13125 * 20 19 17 35 35 H 1.09002 * 109.83385 * 98.15239 * 20 19 17 36 36 H 1.08993 * 110.31371 * 143.34073 * 22 21 20 37 37 H 1.09002 * 110.30467 * 265.41093 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.7200 -2.5977 -0.9473 11 6 0.2200 -2.4816 1.1517 12 6 -0.2403 -3.9151 1.5018 13 8 -0.4427 -4.7200 0.3755 14 6 0.7130 -5.5227 0.0456 15 6 1.7190 -4.7375 -0.6692 16 7 2.1933 -3.5814 0.1202 17 6 3.5335 -3.1631 -0.3121 18 1 3.4743 -2.4475 -1.1322 19 6 4.3504 -2.5863 0.8762 20 6 5.8033 -2.8954 0.4557 21 8 5.7597 -3.9601 -0.5016 22 6 4.4023 -4.3861 -0.7000 23 1 -0.4850 0.8401 0.0004 24 1 -0.6450 -1.8912 0.8496 25 1 0.6748 -2.0264 2.0315 26 1 -1.1735 -3.8561 2.0620 27 1 0.5156 -4.3810 2.1338 28 1 0.4004 -6.3577 -0.5813 29 1 1.1508 -5.9112 0.9650 30 1 1.2870 -4.3750 -1.6019 31 1 2.5685 -5.3802 -0.8999 32 1 4.0981 -3.0979 1.8050 33 1 4.1938 -1.5116 0.9690 34 1 6.3823 -3.2042 1.3260 35 1 6.2539 -2.0111 0.0050 36 1 4.2377 -4.6511 -1.7443 37 1 4.1738 -5.2343 -0.0546 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259634857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:47 Heat of formation + Delta-G solvation = -73.653141 kcal Electronic energy + Delta-G solvation = -19101.500193 eV Core-core repulsion = 16265.366433 eV Total energy + Delta-G solvation = -2836.133760 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.19556 -39.59687 -37.24333 -35.09176 -32.79200 -32.40450 -30.06820 -29.01824 -27.76363 -24.84295 -23.88781 -22.31417 -21.64692 -20.95718 -18.60555 -18.08854 -17.09196 -16.98009 -16.69673 -16.45861 -15.88986 -15.69896 -15.35424 -14.77861 -14.41818 -14.21159 -13.93868 -13.49312 -13.15686 -12.90268 -12.67951 -12.50345 -12.43722 -12.33380 -11.93276 -11.75057 -11.61962 -11.33827 -11.19324 -10.82713 -10.54901 -10.34511 -10.14862 -9.06952 -8.08077 -6.21195 1.36954 1.40055 1.49059 2.39566 2.80518 3.11712 3.17406 3.36230 3.74139 4.03064 4.20740 4.29485 4.33561 4.40509 4.46724 4.49173 4.58436 4.68399 4.74437 4.76280 4.85751 4.89372 4.95464 5.01639 5.03886 5.20761 5.30686 5.42677 5.60430 5.79904 5.88597 6.00715 6.15135 6.41478 6.51212 6.68535 6.96723 7.48061 8.95186 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.013267 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.395702 B = 2109.987937 C = 3509.795084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.948 3.052 4 H -0.260 1.260 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.553 4.553 8 H 0.097 0.903 9 C 0.224 3.776 10 H -0.042 1.042 11 C -0.105 4.105 12 C 0.073 3.927 13 O -0.400 6.400 14 C 0.064 3.936 15 C 0.005 3.995 16 N -0.511 5.511 17 C 0.063 3.937 18 H 0.048 0.952 19 C -0.137 4.137 20 C 0.053 3.947 21 O -0.401 6.401 22 C 0.055 3.945 23 H 0.257 0.743 24 H 0.054 0.946 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.017 0.983 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.735 -8.960 1.787 11.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.184 1.184 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.591 4.591 8 H 0.115 0.885 9 C 0.116 3.884 10 H -0.025 1.025 11 C -0.144 4.144 12 C -0.004 4.004 13 O -0.319 6.319 14 C -0.012 4.012 15 C -0.122 4.122 16 N -0.236 5.236 17 C -0.046 4.046 18 H 0.066 0.934 19 C -0.175 4.175 20 C -0.024 4.024 21 O -0.320 6.320 22 C -0.022 4.022 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.132 0.868 29 H 0.088 0.912 30 H 0.036 0.964 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.637 -9.073 2.082 11.433 hybrid contribution -0.210 1.872 -0.726 2.019 sum 6.427 -7.201 1.357 9.747 Atomic orbital electron populations 1.70143 1.07299 1.26698 1.51372 1.25747 0.95494 1.02357 0.94973 0.85650 0.79542 0.80165 0.77226 1.18378 1.21464 1.20869 1.22588 0.95256 0.91094 1.50172 0.88536 1.18789 0.89493 0.88380 0.91774 1.02478 1.22411 0.99199 0.94897 0.97943 1.22283 0.99712 0.91327 0.87117 1.87658 1.37639 1.57346 1.49237 1.21881 0.85763 0.92858 1.00691 1.22021 0.99866 0.94775 0.95557 1.61836 1.01581 1.07208 1.52989 1.23137 0.89227 0.95681 0.96600 0.93427 1.23241 0.93182 1.02147 0.98930 1.23222 0.96739 0.90059 0.92370 1.88318 1.26819 1.53733 1.63172 1.23656 0.80653 0.96377 1.01483 0.93386 0.92740 0.94696 0.91418 0.92815 0.86753 0.91212 0.96418 0.87539 0.90173 0.90487 0.89637 0.91260 0.89307 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.84 11.02 21.45 0.24 -52.61 16 2 C 0.01 0.74 5.27 84.66 0.45 1.18 16 3 Si 0.95 42.84 29.54 68.60 2.03 44.87 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.55 -28.94 6.97 25.60 0.18 -28.77 16 8 H 0.10 4.76 2.87 -2.91 -0.01 4.75 16 9 C 0.22 11.13 2.02 45.26 0.09 11.22 16 10 H -0.04 -2.46 7.11 -2.39 -0.02 -2.48 16 11 C -0.11 -5.14 5.04 31.68 0.16 -4.98 16 12 C 0.07 2.90 6.20 72.52 0.45 3.35 16 13 O -0.40 -15.75 10.39 -139.86 -1.45 -17.20 16 14 C 0.06 1.95 6.38 69.91 0.45 2.40 16 15 C 0.01 0.18 4.89 84.06 0.41 0.59 16 16 N -0.51 -20.39 4.17 -855.67 -3.57 -23.96 16 17 C 0.06 2.33 2.24 46.37 0.10 2.43 16 18 H 0.05 2.08 6.48 -2.39 -0.02 2.06 16 19 C -0.14 -4.71 5.89 31.85 0.19 -4.52 16 20 C 0.05 1.52 7.79 72.45 0.56 2.08 16 21 O -0.40 -12.62 11.36 -148.98 -1.69 -14.31 16 22 C 0.05 1.63 5.57 72.65 0.40 2.04 16 23 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 24 H 0.05 3.02 6.40 -2.39 -0.02 3.01 16 25 H 0.03 1.76 7.98 -2.39 -0.02 1.74 16 26 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.05 1.94 7.24 -2.39 -0.02 1.92 16 28 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.07 1.89 7.46 -2.39 -0.02 1.87 16 30 H 0.02 0.68 7.30 -2.39 -0.02 0.66 16 31 H 0.11 2.82 5.01 -2.39 -0.01 2.80 16 32 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.08 2.96 6.05 -2.39 -0.01 2.94 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.09 2.42 7.85 -2.39 -0.02 2.40 16 37 H 0.08 2.13 7.24 -2.39 -0.02 2.11 16 Total: -1.00 -61.95 274.08 0.05 -61.90 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.06 Total: 14.29 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 3.44 Total: -12.98 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -3.34 Total: -76.56 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -3.15 Total: -31.51 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -61.95 0.05 -61.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259634857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.758 kcal (2) G-P(sol) polarization free energy of solvation -61.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds