Wall clock time and date at job start Mon Mar 30 2020 03:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99717 * 2 1 4 4 H 1.48498 * 109.46652 * 239.99680 * 3 2 1 5 5 H 1.48496 * 109.46886 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46825 * 119.99624 * 3 2 1 7 7 C 1.37878 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00207 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00016 * 0.02562 * 7 2 1 10 10 H 1.09001 * 108.61232 * 307.19104 * 9 7 2 11 11 C 1.50980 * 108.75258 * 65.39010 * 9 7 2 12 12 C 1.54710 * 109.08558 * 212.98531 * 11 9 7 13 13 O 1.36616 * 110.78607 * 286.66121 * 12 11 9 14 14 C 1.43451 * 117.83986 * 61.04183 * 13 12 11 15 15 C 1.51050 * 107.55512 * 277.90160 * 14 13 12 16 16 N 1.47398 * 111.55518 * 94.02860 * 15 14 13 17 17 C 1.46899 * 111.00176 * 84.89708 * 16 15 14 18 18 H 1.09000 * 110.46085 * 207.26034 * 17 16 15 19 19 C 1.54517 * 110.51195 * 329.86547 * 17 16 15 20 20 C 1.54476 * 104.06328 * 118.64155 * 19 17 16 21 21 O 1.44431 * 104.80373 * 23.97931 * 20 19 17 22 22 C 1.44641 * 105.37020 * 319.56591 * 21 20 19 23 23 H 0.96991 * 120.00340 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.53696 * 93.10275 * 11 9 7 25 25 H 1.08998 * 109.53704 * 332.86845 * 11 9 7 26 26 H 1.08989 * 109.21635 * 47.00129 * 12 11 9 27 27 H 1.09005 * 109.21180 * 166.32982 * 12 11 9 28 28 H 1.08998 * 109.84200 * 37.41280 * 14 13 12 29 29 H 1.08990 * 109.84148 * 158.38973 * 14 13 12 30 30 H 1.09005 * 109.05838 * 214.55720 * 15 14 13 31 31 H 1.08991 * 109.06399 * 333.56186 * 15 14 13 32 32 H 1.08995 * 110.51098 * 237.28896 * 19 17 16 33 33 H 1.09003 * 110.50709 * 359.86379 * 19 17 16 34 34 H 1.09000 * 110.37593 * 142.80710 * 20 19 17 35 35 H 1.08998 * 110.37796 * 265.03961 * 20 19 17 36 36 H 1.09009 * 110.33921 * 281.59397 * 22 21 20 37 37 H 1.08995 * 110.51336 * 159.18287 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.5361 -2.4881 0.8232 11 6 0.4934 -2.6222 -1.2995 12 6 -0.8260 -3.3892 -1.0454 13 8 -0.5828 -4.7184 -0.8436 14 6 0.2408 -5.0870 0.2716 15 6 1.6814 -4.9267 -0.1534 16 7 2.2122 -3.6034 0.2202 17 6 2.7045 -3.6052 1.6043 18 1 2.6416 -2.6047 2.0324 19 6 1.9056 -4.6121 2.4618 20 6 2.9687 -5.6277 2.9360 21 8 4.2190 -4.9070 2.8786 22 6 4.1570 -4.1280 1.6615 23 1 -0.4850 0.8399 -0.0004 24 1 1.0983 -3.1675 -2.0239 25 1 0.2684 -1.6281 -1.6858 26 1 -1.3169 -2.9765 -0.1643 27 1 -1.4813 -3.2715 -1.9085 28 1 0.0302 -4.4343 1.1187 29 1 0.0492 -6.1242 0.5461 30 1 2.2820 -5.6996 0.3263 31 1 1.7486 -5.0438 -1.2349 32 1 1.4498 -4.1099 3.3150 33 1 1.1438 -5.1068 1.8592 34 1 2.7606 -5.9458 3.9576 35 1 2.9946 -6.4893 2.2689 36 1 4.3678 -4.7581 0.7972 37 1 4.8587 -3.2951 1.7050 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259634862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:49 Heat of formation + Delta-G solvation = -57.885861 kcal Electronic energy + Delta-G solvation = -19132.649499 eV Core-core repulsion = 16297.199460 eV Total energy + Delta-G solvation = -2835.450039 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.14246 -38.30711 -35.50656 -33.52626 -31.04750 -30.02261 -29.24726 -26.89654 -26.14253 -23.44495 -22.79885 -21.11581 -20.31232 -18.76995 -16.84892 -16.47674 -15.92613 -15.54912 -15.24875 -15.02405 -14.58137 -14.38399 -13.76926 -13.28086 -12.58028 -12.46352 -12.01477 -11.93580 -11.65916 -11.39666 -11.08671 -10.95061 -10.86769 -10.70028 -10.51587 -10.25669 -10.02343 -9.90412 -9.70480 -9.41155 -9.21355 -8.69384 -8.38981 -7.22122 -6.08626 -4.12938 3.28871 3.33460 3.36597 4.24955 4.31791 4.41420 4.73519 5.10255 5.20459 5.25574 5.32518 5.41098 5.60942 5.67079 5.72942 5.75598 5.97593 6.00571 6.05445 6.14402 6.23495 6.28051 6.36387 6.39682 6.53910 6.61250 6.93509 7.01262 7.10214 7.22536 7.56135 7.78839 8.03660 8.09869 8.33289 8.48155 8.96067 9.52244 10.98166 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.020455 B = 0.010695 C = 0.007650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.531465 B = 2617.365911 C = 3659.130012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.217 3.783 10 H 0.006 0.994 11 C -0.135 4.135 12 C 0.070 3.930 13 O -0.395 6.395 14 C 0.032 3.968 15 C 0.025 3.975 16 N -0.531 5.531 17 C 0.066 3.934 18 H 0.100 0.900 19 C -0.213 4.213 20 C 0.050 3.950 21 O -0.386 6.386 22 C 0.055 3.945 23 H 0.262 0.738 24 H 0.046 0.954 25 H 0.093 0.907 26 H 0.036 0.964 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.330 -8.833 2.211 9.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.112 3.888 10 H 0.024 0.976 11 C -0.173 4.173 12 C -0.007 4.007 13 O -0.314 6.314 14 C -0.045 4.045 15 C -0.104 4.104 16 N -0.255 5.255 17 C -0.044 4.044 18 H 0.118 0.882 19 C -0.251 4.251 20 C -0.027 4.027 21 O -0.304 6.304 22 C -0.022 4.022 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.111 0.889 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.658 -8.725 1.941 9.090 hybrid contribution -0.364 1.104 0.587 1.302 sum 1.294 -7.621 2.528 8.132 Atomic orbital electron populations 1.69939 1.05829 1.26834 1.50511 1.24935 0.94889 0.99102 0.95400 0.86596 0.79505 0.82851 0.78704 1.20208 1.21414 1.20313 1.21127 0.93492 0.89351 1.50200 0.91966 1.19118 0.89208 0.87300 0.93212 0.97611 1.22295 0.94378 1.01331 0.99338 1.21957 0.97805 0.81095 0.99867 1.86307 1.70176 1.26108 1.48809 1.23329 0.92027 0.99832 0.89339 1.22585 0.93349 0.92457 1.01985 1.62079 1.41309 1.02553 1.19581 1.22950 0.92974 0.99735 0.88757 0.88165 1.24236 1.00192 0.98963 1.01752 1.23281 0.84006 0.94448 1.00947 1.89093 1.36920 1.61297 1.43101 1.23554 0.97540 0.94711 0.86420 0.92864 0.93483 0.88864 0.94571 0.90521 0.91795 0.89928 0.91807 0.90237 0.91131 0.88266 0.89947 0.92917 0.92038 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.32 12.00 55.43 0.67 -23.66 16 2 C 0.06 1.54 5.03 -17.82 -0.09 1.45 16 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.50 -13.18 7.59 -34.44 -0.26 -13.44 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.22 5.11 1.04 -69.26 -0.07 5.04 16 10 H 0.01 0.16 6.40 -51.93 -0.33 -0.17 16 11 C -0.13 -3.08 4.86 -26.85 -0.13 -3.21 16 12 C 0.07 1.44 6.43 38.06 0.24 1.68 16 13 O -0.40 -7.60 9.95 -21.73 -0.22 -7.82 16 14 C 0.03 0.54 4.65 36.18 0.17 0.70 16 15 C 0.02 0.43 4.67 -4.53 -0.02 0.41 16 16 N -0.53 -10.73 4.32 -219.32 -0.95 -11.68 16 17 C 0.07 1.23 2.92 -66.14 -0.19 1.04 16 18 H 0.10 2.15 7.10 -51.93 -0.37 1.78 16 19 C -0.21 -3.35 5.41 -25.16 -0.14 -3.49 16 20 C 0.05 0.71 7.36 37.93 0.28 0.99 16 21 O -0.39 -6.46 11.65 -35.23 -0.41 -6.87 16 22 C 0.05 0.93 7.14 37.94 0.27 1.20 16 23 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 24 H 0.05 1.05 7.24 -51.93 -0.38 0.68 16 25 H 0.09 2.37 6.34 -51.93 -0.33 2.04 16 26 H 0.04 0.80 7.72 -51.94 -0.40 0.40 16 27 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 28 H 0.06 1.17 4.96 -51.93 -0.26 0.91 16 29 H 0.08 1.15 8.11 -51.93 -0.42 0.73 16 30 H 0.06 0.97 6.02 -51.93 -0.31 0.66 16 31 H 0.08 1.45 7.24 -51.93 -0.38 1.07 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.10 1.50 2.79 -51.93 -0.14 1.36 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.67 7.63 -51.93 -0.40 0.27 16 36 H 0.06 1.01 7.78 -51.92 -0.40 0.61 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 273.90 15.07 4.13 4.13 Total: -1.00 -27.44 273.90 -7.10 -34.54 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.35 Total: 3.17 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 0.06 Total: -7.62 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.28 Total: -35.33 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.63 Total: -14.69 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.44 -7.10 -34.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259634862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.350 kcal (2) G-P(sol) polarization free energy of solvation -27.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds