Wall clock time and date at job start Mon Mar 30 2020 03:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99717 * 2 1 4 4 H 1.48498 * 109.46652 * 239.99680 * 3 2 1 5 5 H 1.48496 * 109.46886 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46825 * 119.99624 * 3 2 1 7 7 C 1.37878 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00207 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00016 * 0.02562 * 7 2 1 10 10 H 1.09001 * 108.61232 * 307.19104 * 9 7 2 11 11 C 1.50980 * 108.75258 * 65.39010 * 9 7 2 12 12 C 1.54710 * 109.08558 * 212.98531 * 11 9 7 13 13 O 1.36616 * 110.78607 * 286.66121 * 12 11 9 14 14 C 1.43451 * 117.83986 * 61.04183 * 13 12 11 15 15 C 1.51050 * 107.55512 * 277.90160 * 14 13 12 16 16 N 1.47398 * 111.55518 * 94.02860 * 15 14 13 17 17 C 1.46899 * 111.00176 * 84.89708 * 16 15 14 18 18 H 1.09000 * 110.46085 * 207.26034 * 17 16 15 19 19 C 1.54517 * 110.51195 * 329.86547 * 17 16 15 20 20 C 1.54476 * 104.06328 * 118.64155 * 19 17 16 21 21 O 1.44431 * 104.80373 * 23.97931 * 20 19 17 22 22 C 1.44641 * 105.37020 * 319.56591 * 21 20 19 23 23 H 0.96991 * 120.00340 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.53696 * 93.10275 * 11 9 7 25 25 H 1.08998 * 109.53704 * 332.86845 * 11 9 7 26 26 H 1.08989 * 109.21635 * 47.00129 * 12 11 9 27 27 H 1.09005 * 109.21180 * 166.32982 * 12 11 9 28 28 H 1.08998 * 109.84200 * 37.41280 * 14 13 12 29 29 H 1.08990 * 109.84148 * 158.38973 * 14 13 12 30 30 H 1.09005 * 109.05838 * 214.55720 * 15 14 13 31 31 H 1.08991 * 109.06399 * 333.56186 * 15 14 13 32 32 H 1.08995 * 110.51098 * 237.28896 * 19 17 16 33 33 H 1.09003 * 110.50709 * 359.86379 * 19 17 16 34 34 H 1.09000 * 110.37593 * 142.80710 * 20 19 17 35 35 H 1.08998 * 110.37796 * 265.03961 * 20 19 17 36 36 H 1.09009 * 110.33921 * 281.59397 * 22 21 20 37 37 H 1.08995 * 110.51336 * 159.18287 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.5361 -2.4881 0.8232 11 6 0.4934 -2.6222 -1.2995 12 6 -0.8260 -3.3892 -1.0454 13 8 -0.5828 -4.7184 -0.8436 14 6 0.2408 -5.0870 0.2716 15 6 1.6814 -4.9267 -0.1534 16 7 2.2122 -3.6034 0.2202 17 6 2.7045 -3.6052 1.6043 18 1 2.6416 -2.6047 2.0324 19 6 1.9056 -4.6121 2.4618 20 6 2.9687 -5.6277 2.9360 21 8 4.2190 -4.9070 2.8786 22 6 4.1570 -4.1280 1.6615 23 1 -0.4850 0.8399 -0.0004 24 1 1.0983 -3.1675 -2.0239 25 1 0.2684 -1.6281 -1.6858 26 1 -1.3169 -2.9765 -0.1643 27 1 -1.4813 -3.2715 -1.9085 28 1 0.0302 -4.4343 1.1187 29 1 0.0492 -6.1242 0.5461 30 1 2.2820 -5.6996 0.3263 31 1 1.7486 -5.0438 -1.2349 32 1 1.4498 -4.1099 3.3150 33 1 1.1438 -5.1068 1.8592 34 1 2.7606 -5.9458 3.9576 35 1 2.9946 -6.4893 2.2689 36 1 4.3678 -4.7581 0.7972 37 1 4.8587 -3.2951 1.7050 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259634862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:48 Heat of formation + Delta-G solvation = -77.146753 kcal Electronic energy + Delta-G solvation = -19133.484714 eV Core-core repulsion = 16297.199460 eV Total energy + Delta-G solvation = -2836.285254 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.62229 -39.73180 -37.07376 -35.34207 -32.86978 -31.41069 -30.63297 -28.64005 -27.73087 -25.21423 -24.18114 -22.54247 -21.88987 -20.42024 -18.57640 -18.05550 -17.48648 -17.13889 -16.72794 -16.47575 -16.24897 -15.86360 -15.29787 -14.85035 -14.33101 -13.87469 -13.55473 -13.47908 -13.19161 -12.98071 -12.81379 -12.71923 -12.52718 -12.15840 -12.10093 -11.94618 -11.73170 -11.54357 -11.27575 -10.95496 -10.70887 -10.54139 -10.28652 -8.84561 -8.12299 -6.22765 1.41164 1.41686 1.49074 2.40561 2.86256 2.96971 3.16250 3.27469 3.75984 3.99276 4.06202 4.10892 4.18658 4.30004 4.37283 4.40340 4.42618 4.53110 4.65652 4.74753 4.75664 4.88004 4.93717 5.00476 5.05562 5.11873 5.18238 5.33255 5.36185 5.66837 5.71903 5.82779 6.25381 6.38390 6.62758 6.75449 6.93544 7.45698 8.92700 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.020455 B = 0.010695 C = 0.007650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.531465 B = 2617.365911 C = 3659.130012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.951 3.049 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.051 0.949 9 C 0.229 3.771 10 H -0.028 1.028 11 C -0.128 4.128 12 C 0.085 3.915 13 O -0.395 6.395 14 C 0.029 3.971 15 C 0.026 3.974 16 N -0.540 5.540 17 C 0.061 3.939 18 H 0.060 0.940 19 C -0.208 4.208 20 C 0.052 3.948 21 O -0.397 6.397 22 C 0.064 3.936 23 H 0.261 0.739 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.015 0.985 27 H 0.094 0.906 28 H 0.048 0.952 29 H 0.126 0.874 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 -10.637 2.382 11.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.069 0.931 9 C 0.123 3.877 10 H -0.010 1.010 11 C -0.167 4.167 12 C 0.007 3.993 13 O -0.314 6.314 14 C -0.047 4.047 15 C -0.102 4.102 16 N -0.265 5.265 17 C -0.049 4.049 18 H 0.079 0.921 19 C -0.246 4.246 20 C -0.025 4.025 21 O -0.316 6.316 22 C -0.013 4.013 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.033 0.967 27 H 0.112 0.888 28 H 0.066 0.934 29 H 0.144 0.856 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.165 -10.549 2.119 10.975 hybrid contribution -0.499 1.623 0.576 1.793 sum 1.666 -8.926 2.695 9.472 Atomic orbital electron populations 1.70042 1.06851 1.27316 1.51203 1.25594 0.95633 1.01915 0.95245 0.85717 0.78412 0.79481 0.78649 1.19825 1.21051 1.20119 1.21396 0.93156 0.91043 1.49995 0.93058 1.18823 0.88751 0.87871 0.92219 1.01014 1.22136 0.95708 1.00092 0.98755 1.21721 0.96455 0.81467 0.99651 1.86309 1.70557 1.24798 1.49736 1.23538 0.91333 1.01802 0.88011 1.22652 0.94128 0.91481 1.01958 1.61958 1.40469 1.03232 1.20796 1.22887 0.94945 0.98774 0.88329 0.92116 1.24172 1.00636 0.98700 1.01097 1.23484 0.81919 0.94026 1.03036 1.89088 1.38208 1.61519 1.42813 1.23404 0.95937 0.94890 0.87091 0.92990 0.93251 0.91842 0.96686 0.88803 0.93384 0.85634 0.88751 0.90758 0.91782 0.87326 0.87605 0.90494 0.90955 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.20 12.00 21.45 0.26 -50.95 16 2 C 0.02 0.83 5.03 84.65 0.43 1.26 16 3 Si 0.95 43.44 29.54 68.60 2.03 45.47 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.52 -27.89 7.59 25.60 0.19 -27.70 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.23 11.08 1.04 43.30 0.05 11.13 16 10 H -0.03 -1.51 6.40 -2.39 -0.02 -1.52 16 11 C -0.13 -5.94 4.86 30.52 0.15 -5.79 16 12 C 0.08 3.46 6.43 72.57 0.47 3.93 16 13 O -0.40 -14.50 9.95 -100.69 -1.00 -15.50 16 14 C 0.03 0.92 4.65 71.35 0.33 1.26 16 15 C 0.03 0.83 4.67 85.57 0.40 1.23 16 16 N -0.54 -21.66 4.32 -847.79 -3.66 -25.31 16 17 C 0.06 2.25 2.92 45.94 0.13 2.38 16 18 H 0.06 2.71 7.10 -2.39 -0.02 2.70 16 19 C -0.21 -6.19 5.41 31.61 0.17 -6.02 16 20 C 0.05 1.28 7.36 72.48 0.53 1.81 16 21 O -0.40 -12.39 11.65 -148.98 -1.74 -14.12 16 22 C 0.06 2.08 7.14 72.49 0.52 2.60 16 23 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 24 H 0.05 2.21 7.24 -2.39 -0.02 2.20 16 25 H 0.06 3.32 6.34 -2.39 -0.02 3.30 16 26 H 0.01 0.67 7.72 -2.39 -0.02 0.66 16 27 H 0.09 3.47 8.14 -2.38 -0.02 3.45 16 28 H 0.05 1.71 4.96 -2.39 -0.01 1.70 16 29 H 0.13 2.92 8.11 -2.39 -0.02 2.90 16 30 H 0.09 2.49 6.02 -2.38 -0.01 2.48 16 31 H 0.07 2.53 7.24 -2.39 -0.02 2.51 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.11 3.02 2.79 -2.39 -0.01 3.01 16 34 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.08 1.57 7.63 -2.39 -0.02 1.55 16 36 H 0.07 2.20 7.78 -2.38 -0.02 2.19 16 37 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -59.86 273.90 0.32 -59.55 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 1.06 Total: 14.79 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 3.37 Total: -13.91 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -3.40 Total: -76.26 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -2.74 Total: -29.63 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -59.86 0.32 -59.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259634862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.601 kcal (2) G-P(sol) polarization free energy of solvation -59.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds