Wall clock time and date at job start Mon Mar 30 2020 03:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00008 * 2 1 4 4 H 1.48501 * 109.46962 * 264.99896 * 3 2 1 5 5 H 1.48500 * 109.47320 * 24.99725 * 3 2 1 6 6 H 1.48500 * 109.47299 * 145.00025 * 3 2 1 7 7 C 1.37881 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99806 * 185.02885 * 7 2 1 9 9 C 1.50700 * 120.00065 * 5.02552 * 7 2 1 10 10 H 1.09004 * 108.86819 * 3.67549 * 9 7 2 11 11 C 1.46575 * 108.89170 * 122.17708 * 9 7 2 12 12 C 1.54357 * 111.47664 * 181.56349 * 11 9 7 13 13 O 1.40313 * 108.92306 * 283.02399 * 12 11 9 14 14 C 1.44248 * 117.15405 * 93.10641 * 13 12 11 15 15 C 1.53836 * 112.83846 * 317.92405 * 14 13 12 16 16 N 1.44349 * 112.12323 * 318.49784 * 15 14 13 17 17 C 1.46893 * 111.00054 * 215.88788 * 16 15 14 18 18 H 1.09004 * 110.43489 * 285.33457 * 17 16 15 19 19 C 1.54815 * 110.60078 * 162.72097 * 17 16 15 20 20 C 1.54992 * 102.08993 * 220.38474 * 19 17 16 21 21 O 1.44373 * 103.49337 * 37.02285 * 20 19 17 22 22 C 1.43741 * 106.97683 * 319.93767 * 21 20 19 23 23 H 0.97007 * 120.00090 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.08279 * 302.08017 * 11 9 7 25 25 H 1.09010 * 109.07999 * 61.04927 * 11 9 7 26 26 H 1.09000 * 109.56249 * 42.85384 * 12 11 9 27 27 H 1.08997 * 109.56606 * 163.19722 * 12 11 9 28 28 H 1.09002 * 108.80365 * 78.78589 * 14 13 12 29 29 H 1.08998 * 108.80973 * 197.16220 * 14 13 12 30 30 H 1.09005 * 108.95032 * 197.81772 * 15 14 13 31 31 H 1.08996 * 108.95387 * 79.18049 * 15 14 13 32 32 H 1.08995 * 110.90786 * 338.58040 * 19 17 16 33 33 H 1.08996 * 110.91053 * 102.18573 * 19 17 16 34 34 H 1.09006 * 110.62098 * 278.51483 * 20 19 17 35 35 H 1.09006 * 110.75558 * 155.58567 * 20 19 17 36 36 H 1.08999 * 109.87916 * 267.09267 * 22 21 20 37 37 H 1.09003 * 110.00939 * 146.00585 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6023 1.9854 -1.3948 5 1 1.3977 2.6809 0.5916 6 1 3.4898 1.4730 0.8030 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1958 0.0825 9 6 1.2553 -2.4967 -0.1132 10 1 0.1954 -2.2829 -0.2510 11 6 1.7468 -3.2260 -1.2858 12 6 0.9900 -4.5570 -1.4816 13 8 1.4723 -5.4951 -0.5563 14 6 0.7691 -5.6037 0.6984 15 6 0.3762 -4.2361 1.2831 16 7 1.4305 -3.2606 1.1399 17 6 1.4782 -2.3627 2.3015 18 1 0.6547 -1.6494 2.2653 19 6 2.8356 -1.6205 2.3609 20 6 3.1529 -1.6451 3.8778 21 8 2.6721 -2.9388 4.3016 22 6 1.4330 -3.1727 3.6117 23 1 -0.4850 0.8401 -0.0004 24 1 1.6132 -2.6064 -2.1726 25 1 2.8086 -3.4357 -1.1558 26 1 -0.0760 -4.3982 -1.3184 27 1 1.1550 -4.9252 -2.4942 28 1 -0.1350 -6.1930 0.5446 29 1 1.4071 -6.1205 1.4153 30 1 0.1467 -4.3565 2.3418 31 1 -0.5137 -3.8736 0.7686 32 1 3.5973 -2.1571 1.7955 33 1 2.7351 -0.5966 2.0011 34 1 2.6179 -0.8485 4.3949 35 1 4.2259 -1.5594 4.0495 36 1 0.5976 -2.8373 4.2262 37 1 1.3254 -4.2341 3.3876 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259634866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:50 Heat of formation + Delta-G solvation = -66.281401 kcal Electronic energy + Delta-G solvation = -19240.624085 eV Core-core repulsion = 16404.809988 eV Total energy + Delta-G solvation = -2835.814097 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.45273 -37.92156 -35.49392 -33.15564 -31.53807 -30.58464 -28.33831 -26.98523 -26.19753 -23.46951 -22.16196 -20.55116 -19.88443 -19.05308 -17.16542 -15.99146 -15.71388 -15.50662 -15.05118 -14.62968 -14.51259 -14.11251 -13.54563 -13.32953 -12.65587 -12.60221 -12.15808 -11.77710 -11.41968 -11.20721 -11.02884 -10.77475 -10.71618 -10.64360 -10.45329 -9.98381 -9.94271 -9.76564 -9.37527 -9.08595 -8.99099 -8.70716 -8.54939 -7.09778 -6.19206 -4.18063 3.18270 3.26817 3.28662 4.26569 4.37988 4.59666 4.83713 5.26448 5.45346 5.53664 5.64643 5.76303 5.80985 5.86306 5.91006 6.00179 6.09035 6.12776 6.18610 6.24302 6.27817 6.43215 6.56338 6.66480 6.78611 6.98672 7.07603 7.16348 7.33524 7.48753 7.68337 7.74140 7.98908 8.07305 8.32068 8.61391 8.91730 9.40908 10.88079 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.012862 C = 0.008581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.552892 B = 2176.505931 C = 3262.287957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.504 4.504 8 H 0.065 0.935 9 C 0.186 3.814 10 H 0.044 0.956 11 C -0.119 4.119 12 C 0.065 3.935 13 O -0.385 6.385 14 C 0.079 3.921 15 C 0.010 3.990 16 N -0.520 5.520 17 C 0.088 3.912 18 H 0.060 0.940 19 C -0.110 4.110 20 C 0.031 3.969 21 O -0.385 6.385 22 C 0.038 3.962 23 H 0.263 0.737 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.455 -4.803 2.823 5.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.712 3.288 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.543 4.543 8 H 0.083 0.917 9 C 0.081 3.919 10 H 0.062 0.938 11 C -0.158 4.158 12 C -0.012 4.012 13 O -0.304 6.304 14 C 0.001 3.999 15 C -0.119 4.119 16 N -0.246 5.246 17 C -0.021 4.021 18 H 0.078 0.922 19 C -0.148 4.148 20 C -0.046 4.046 21 O -0.304 6.304 22 C -0.039 4.039 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.984 -5.171 2.907 6.013 hybrid contribution -0.857 1.778 -0.076 1.975 sum 0.127 -3.393 2.830 4.421 Atomic orbital electron populations 1.69891 1.05985 1.26898 1.50263 1.24980 0.94813 0.99189 0.94761 0.86739 0.80020 0.83401 0.78650 1.20379 1.21271 1.19409 1.21195 0.93838 0.89722 1.49548 0.91729 1.18590 0.98152 0.90371 0.84766 0.93789 1.21239 1.00616 0.94345 0.99559 1.22482 0.97083 0.90375 0.91257 1.87319 1.57732 1.59328 1.26015 1.22921 0.95447 0.95873 0.85622 1.22571 0.94561 0.94502 1.00303 1.61970 1.43567 1.15566 1.03511 1.22427 0.98481 0.93142 0.88008 0.92156 1.23292 0.96995 1.02341 0.92167 1.23829 0.98904 0.85146 0.96720 1.88762 1.38343 1.36250 1.67077 1.23588 0.86353 1.01053 0.92890 0.92711 0.91971 0.92162 0.94383 0.91374 0.94426 0.90262 0.91347 0.94928 0.90354 0.89225 0.93417 0.90092 0.93695 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 12.60 55.43 0.70 -23.26 16 2 C 0.07 1.66 4.98 -17.82 -0.09 1.57 16 3 Si 0.88 19.91 28.65 -169.99 -4.87 15.04 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 7 C -0.50 -12.52 4.49 -34.44 -0.15 -12.67 16 8 H 0.06 1.63 6.42 -52.49 -0.34 1.29 16 9 C 0.19 4.36 1.95 -71.44 -0.14 4.22 16 10 H 0.04 1.17 6.15 -51.93 -0.32 0.85 16 11 C -0.12 -2.56 4.92 -29.09 -0.14 -2.70 16 12 C 0.07 1.22 6.39 37.87 0.24 1.47 16 13 O -0.39 -7.47 10.27 -33.67 -0.35 -7.81 16 14 C 0.08 1.34 7.02 37.59 0.26 1.60 16 15 C 0.01 0.19 4.63 -4.75 -0.02 0.17 16 16 N -0.52 -11.12 4.22 -222.79 -0.94 -12.06 16 17 C 0.09 1.85 2.35 -66.19 -0.16 1.69 16 18 H 0.06 1.44 7.95 -51.93 -0.41 1.03 16 19 C -0.11 -2.26 4.56 -24.72 -0.11 -2.38 16 20 C 0.03 0.55 7.72 38.21 0.29 0.84 16 21 O -0.39 -7.43 11.52 -35.23 -0.41 -7.84 16 22 C 0.04 0.70 6.48 37.73 0.24 0.95 16 23 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 24 H 0.06 1.34 8.13 -51.93 -0.42 0.91 16 25 H 0.06 1.35 8.14 -51.92 -0.42 0.92 16 26 H 0.04 0.71 7.15 -51.93 -0.37 0.34 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.15 5.10 -51.93 -0.26 0.89 16 31 H 0.03 0.65 6.72 -51.93 -0.35 0.30 16 32 H 0.08 1.70 7.47 -51.93 -0.39 1.31 16 33 H 0.09 1.97 5.29 -51.93 -0.27 1.70 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.50 5.86 -51.93 -0.30 1.20 16 LS Contribution 275.60 15.07 4.15 4.15 Total: -1.00 -27.02 275.60 -7.02 -34.04 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.54 Total: 2.98 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 0.23 Total: -5.24 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: -0.24 Total: -35.32 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.75 Total: -15.65 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.87 Total: 15.04 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.02 -7.02 -34.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259634866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.241 kcal (2) G-P(sol) polarization free energy of solvation -27.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds