Wall clock time and date at job start Mon Mar 30 2020 03:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00008 * 2 1 4 4 H 1.48501 * 109.46962 * 264.99896 * 3 2 1 5 5 H 1.48500 * 109.47320 * 24.99725 * 3 2 1 6 6 H 1.48500 * 109.47299 * 145.00025 * 3 2 1 7 7 C 1.37881 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99806 * 185.02885 * 7 2 1 9 9 C 1.50700 * 120.00065 * 5.02552 * 7 2 1 10 10 H 1.09004 * 108.86819 * 3.67549 * 9 7 2 11 11 C 1.46575 * 108.89170 * 122.17708 * 9 7 2 12 12 C 1.54357 * 111.47664 * 181.56349 * 11 9 7 13 13 O 1.40313 * 108.92306 * 283.02399 * 12 11 9 14 14 C 1.44248 * 117.15405 * 93.10641 * 13 12 11 15 15 C 1.53836 * 112.83846 * 317.92405 * 14 13 12 16 16 N 1.44349 * 112.12323 * 318.49784 * 15 14 13 17 17 C 1.46893 * 111.00054 * 215.88788 * 16 15 14 18 18 H 1.09004 * 110.43489 * 285.33457 * 17 16 15 19 19 C 1.54815 * 110.60078 * 162.72097 * 17 16 15 20 20 C 1.54992 * 102.08993 * 220.38474 * 19 17 16 21 21 O 1.44373 * 103.49337 * 37.02285 * 20 19 17 22 22 C 1.43741 * 106.97683 * 319.93767 * 21 20 19 23 23 H 0.97007 * 120.00090 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.08279 * 302.08017 * 11 9 7 25 25 H 1.09010 * 109.07999 * 61.04927 * 11 9 7 26 26 H 1.09000 * 109.56249 * 42.85384 * 12 11 9 27 27 H 1.08997 * 109.56606 * 163.19722 * 12 11 9 28 28 H 1.09002 * 108.80365 * 78.78589 * 14 13 12 29 29 H 1.08998 * 108.80973 * 197.16220 * 14 13 12 30 30 H 1.09005 * 108.95032 * 197.81772 * 15 14 13 31 31 H 1.08996 * 108.95387 * 79.18049 * 15 14 13 32 32 H 1.08995 * 110.90786 * 338.58040 * 19 17 16 33 33 H 1.08996 * 110.91053 * 102.18573 * 19 17 16 34 34 H 1.09006 * 110.62098 * 278.51483 * 20 19 17 35 35 H 1.09006 * 110.75558 * 155.58567 * 20 19 17 36 36 H 1.08999 * 109.87916 * 267.09267 * 22 21 20 37 37 H 1.09003 * 110.00939 * 146.00585 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6023 1.9854 -1.3948 5 1 1.3977 2.6809 0.5916 6 1 3.4898 1.4730 0.8030 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1958 0.0825 9 6 1.2553 -2.4967 -0.1132 10 1 0.1954 -2.2829 -0.2510 11 6 1.7468 -3.2260 -1.2858 12 6 0.9900 -4.5570 -1.4816 13 8 1.4723 -5.4951 -0.5563 14 6 0.7691 -5.6037 0.6984 15 6 0.3762 -4.2361 1.2831 16 7 1.4305 -3.2606 1.1399 17 6 1.4782 -2.3627 2.3015 18 1 0.6547 -1.6494 2.2653 19 6 2.8356 -1.6205 2.3609 20 6 3.1529 -1.6451 3.8778 21 8 2.6721 -2.9388 4.3016 22 6 1.4330 -3.1727 3.6117 23 1 -0.4850 0.8401 -0.0004 24 1 1.6132 -2.6064 -2.1726 25 1 2.8086 -3.4357 -1.1558 26 1 -0.0760 -4.3982 -1.3184 27 1 1.1550 -4.9252 -2.4942 28 1 -0.1350 -6.1930 0.5446 29 1 1.4071 -6.1205 1.4153 30 1 0.1467 -4.3565 2.3418 31 1 -0.5137 -3.8736 0.7686 32 1 3.5973 -2.1571 1.7955 33 1 2.7351 -0.5966 2.0011 34 1 2.6179 -0.8485 4.3949 35 1 4.2259 -1.5594 4.0495 36 1 0.5976 -2.8373 4.2262 37 1 1.3254 -4.2341 3.3876 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259634866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:50 Heat of formation + Delta-G solvation = -85.477305 kcal Electronic energy + Delta-G solvation = -19241.456482 eV Core-core repulsion = 16404.809988 eV Total energy + Delta-G solvation = -2836.646494 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.06034 -39.44236 -37.12223 -34.93234 -33.32226 -32.18778 -29.85052 -28.66824 -27.85223 -25.22426 -23.66705 -22.14046 -21.57149 -20.70606 -18.96349 -17.61728 -17.32329 -17.13466 -16.67849 -16.24091 -16.04747 -15.67501 -15.16435 -14.94300 -14.38153 -14.30199 -13.76099 -13.35590 -13.09941 -12.97212 -12.69132 -12.50590 -12.40456 -12.18952 -12.07675 -11.70885 -11.54721 -11.38847 -11.05109 -10.88561 -10.64424 -10.51624 -10.16865 -8.85546 -8.15883 -6.18676 1.36730 1.41047 1.47789 2.38239 2.85728 3.10206 3.11848 3.52288 3.90873 4.08649 4.16186 4.24506 4.33843 4.34948 4.42045 4.55041 4.59501 4.61165 4.65077 4.79003 4.82257 4.91148 4.97751 5.00022 5.13644 5.25382 5.38342 5.44178 5.57047 5.68713 5.82989 5.99015 6.18284 6.47777 6.61871 6.84894 6.96715 7.42637 8.91148 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.012862 C = 0.008581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.552892 B = 2176.505931 C = 3262.287957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.501 4.501 8 H 0.057 0.943 9 C 0.190 3.810 10 H 0.009 0.991 11 C -0.117 4.117 12 C 0.075 3.925 13 O -0.398 6.398 14 C 0.077 3.923 15 C 0.008 3.992 16 N -0.522 5.522 17 C 0.085 3.915 18 H 0.025 0.975 19 C -0.109 4.109 20 C 0.038 3.962 21 O -0.392 6.392 22 C 0.046 3.954 23 H 0.260 0.740 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.036 0.964 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.015 0.985 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.105 -5.849 3.700 7.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.183 1.183 7 C -0.540 4.540 8 H 0.076 0.924 9 C 0.085 3.915 10 H 0.027 0.973 11 C -0.156 4.156 12 C -0.003 4.003 13 O -0.317 6.317 14 C 0.001 3.999 15 C -0.122 4.122 16 N -0.247 5.247 17 C -0.024 4.024 18 H 0.043 0.957 19 C -0.147 4.147 20 C -0.039 4.039 21 O -0.311 6.311 22 C -0.031 4.031 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.650 -6.232 3.792 7.479 hybrid contribution -1.067 2.073 -0.334 2.356 sum 0.583 -4.159 3.457 5.439 Atomic orbital electron populations 1.70012 1.07247 1.27196 1.51963 1.25523 0.95268 1.01741 0.94756 0.85939 0.79309 0.80167 0.78552 1.20408 1.21482 1.18264 1.21317 0.93435 0.90649 1.48617 0.92438 1.18468 0.95787 0.90705 0.86557 0.97334 1.21161 1.00201 0.95876 0.98351 1.22390 0.96349 0.88899 0.92623 1.87299 1.58565 1.59027 1.26803 1.23092 0.96996 0.94865 0.84997 1.22689 0.93110 0.94708 1.01680 1.61962 1.44501 1.15475 1.02808 1.22408 0.97413 0.93105 0.89435 0.95663 1.23120 0.96401 1.00884 0.94305 1.23855 1.00619 0.85083 0.94328 1.88753 1.38550 1.36814 1.67012 1.23544 0.86794 1.01314 0.91448 0.93055 0.92767 0.93220 0.94518 0.88733 0.91522 0.88652 0.89238 0.96724 0.91793 0.91129 0.92161 0.87678 0.92095 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.13 12.60 21.45 0.27 -50.86 16 2 C 0.03 1.37 4.98 84.66 0.42 1.79 16 3 Si 0.93 41.27 28.65 68.60 1.97 43.24 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 7 C -0.50 -25.40 4.49 25.60 0.11 -25.29 16 8 H 0.06 2.95 6.42 -2.91 -0.02 2.93 16 9 C 0.19 9.09 1.95 42.01 0.08 9.17 16 10 H 0.01 0.48 6.15 -2.38 -0.01 0.47 16 11 C -0.12 -5.06 4.92 29.07 0.14 -4.92 16 12 C 0.07 2.71 6.39 72.44 0.46 3.17 16 13 O -0.40 -14.58 10.27 -143.38 -1.47 -16.05 16 14 C 0.08 2.42 7.02 72.26 0.51 2.92 16 15 C 0.01 0.27 4.63 87.06 0.40 0.67 16 16 N -0.52 -22.18 4.22 -858.77 -3.62 -25.81 16 17 C 0.09 3.56 2.35 45.91 0.11 3.67 16 18 H 0.03 1.24 7.95 -2.38 -0.02 1.22 16 19 C -0.11 -4.44 4.56 31.90 0.15 -4.30 16 20 C 0.04 1.26 7.72 72.66 0.56 1.82 16 21 O -0.39 -14.10 11.52 -148.98 -1.72 -15.82 16 22 C 0.05 1.59 6.48 72.35 0.47 2.06 16 23 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 24 H 0.05 2.37 8.13 -2.39 -0.02 2.35 16 25 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 26 H 0.04 1.34 7.15 -2.39 -0.02 1.32 16 27 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.09 2.82 5.10 -2.38 -0.01 2.81 16 31 H 0.01 0.58 6.72 -2.39 -0.02 0.57 16 32 H 0.06 2.76 7.47 -2.39 -0.02 2.74 16 33 H 0.07 3.12 5.29 -2.39 -0.01 3.11 16 34 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.10 3.18 5.86 -2.39 -0.01 3.16 16 Total: -1.00 -58.02 275.60 -0.11 -58.13 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 1.05 Total: 16.38 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 3.42 Total: -9.22 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -3.35 Total: -76.67 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -3.19 Total: -31.87 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.97 Total: 43.24 kcal Total: -58.02 -0.11 -58.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259634866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.347 kcal (2) G-P(sol) polarization free energy of solvation -58.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds