Wall clock time and date at job start Mon Mar 30 2020 04:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.34769 * 119.99692 * 2 1 4 4 O 1.21283 * 119.99691 * 185.02182 * 3 2 1 5 5 C 1.50699 * 120.00471 * 5.02789 * 3 2 1 6 6 H 1.09002 * 110.45538 * 328.62737 * 5 3 2 7 7 C 1.54508 * 110.51360 * 206.02260 * 5 3 2 8 8 C 1.54478 * 104.06518 * 241.21333 * 7 5 3 9 9 O 1.44426 * 104.80277 * 23.98156 * 8 7 5 10 10 C 1.44432 * 105.27156 * 319.48456 * 9 8 7 11 11 C 1.46495 * 119.99913 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47154 * 126.30579 * 11 2 1 13 13 C 1.52996 * 109.47092 * 246.30896 * 11 2 1 14 14 C 1.50698 * 109.47209 * 6.30644 * 11 2 1 15 15 H 1.08002 * 120.00246 * 244.52229 * 14 11 2 16 16 C 1.37881 * 120.00156 * 64.52183 * 14 11 2 17 17 N 1.31513 * 120.00464 * 181.47322 * 16 14 11 18 18 Si 1.86803 * 119.99724 * 1.47532 * 16 14 11 19 19 H 1.48505 * 109.47241 * 92.10654 * 18 16 14 20 20 H 1.48495 * 109.47062 * 212.10578 * 18 16 14 21 21 H 1.48499 * 109.46930 * 332.10583 * 18 16 14 22 22 H 1.08996 * 109.46810 * 86.17755 * 1 2 3 23 23 H 1.09002 * 109.47177 * 206.17639 * 1 2 3 24 24 H 1.09004 * 109.47206 * 326.17493 * 1 2 3 25 25 H 1.09002 * 110.50985 * 359.86212 * 7 5 3 26 26 H 1.09004 * 110.51166 * 122.56647 * 7 5 3 27 27 H 1.09006 * 110.37113 * 142.80718 * 8 7 5 28 28 H 1.08993 * 110.37715 * 265.03374 * 8 7 5 29 29 H 1.08999 * 110.37255 * 281.68253 * 10 9 8 30 30 H 1.09000 * 110.36801 * 159.34412 * 10 9 8 31 31 H 1.09001 * 109.46513 * 68.57397 * 12 11 2 32 32 H 1.08993 * 109.47157 * 188.57681 * 12 11 2 33 33 H 1.09000 * 109.46785 * 308.57956 * 12 11 2 34 34 H 1.08998 * 109.47810 * 60.00224 * 13 11 2 35 35 H 1.09002 * 109.46958 * 180.02562 * 13 11 2 36 36 H 1.09000 * 109.46959 * 300.00019 * 13 11 2 37 37 H 0.97000 * 120.00124 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3482 1.1692 -0.0919 5 6 1.3898 2.4698 0.1144 6 1 0.4063 2.3855 -0.3481 7 6 2.1965 3.6170 -0.5340 8 6 2.4561 4.5982 0.6306 9 8 2.3686 3.7874 1.8226 10 6 1.2575 2.8935 1.5940 11 6 2.1976 -1.2687 0.0006 12 6 3.1922 -1.2839 -1.1619 13 6 2.9545 -1.4200 1.3215 14 6 1.2257 -2.4099 -0.1550 15 1 1.1022 -3.1267 0.6434 16 6 0.4941 -2.5390 -1.3166 17 7 -0.3751 -3.5180 -1.4410 18 14 0.7377 -1.3231 -2.7137 19 1 1.7658 -1.8443 -3.6500 20 1 -0.5449 -1.1394 -3.4392 21 1 1.1858 -0.0190 -2.1625 22 1 -0.3633 0.0685 -1.0254 23 1 -0.3633 -0.9223 0.4533 24 1 -0.3634 0.8537 0.5721 25 1 3.1383 3.2425 -0.9351 26 1 1.6119 4.0999 -1.3171 27 1 3.4500 5.0372 0.5425 28 1 1.6968 5.3799 0.6448 29 1 0.3130 3.4127 1.7571 30 1 1.3305 2.0230 2.2460 31 1 3.9833 -0.5582 -0.9726 32 1 3.6268 -2.2791 -1.2553 33 1 2.6752 -1.0249 -2.0859 34 1 2.2459 -1.4093 2.1497 35 1 3.4998 -2.3638 1.3218 36 1 3.6574 -0.5945 1.4341 37 1 -0.8900 -3.6086 -2.2580 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259677417.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:59 Heat of formation + Delta-G solvation = -54.901083 kcal Electronic energy + Delta-G solvation = -19137.946259 eV Core-core repulsion = 16302.625649 eV Total energy + Delta-G solvation = -2835.320610 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.18095 -38.36896 -35.75056 -32.93238 -32.11230 -31.14504 -29.00528 -26.51222 -26.27811 -24.57096 -23.45594 -22.16683 -19.91257 -18.17313 -16.98591 -16.60366 -16.10154 -15.77262 -15.07775 -14.93225 -14.37599 -14.25306 -13.23489 -12.93921 -12.84126 -12.59408 -12.33585 -12.03758 -11.77486 -11.52488 -11.40340 -11.23561 -11.05031 -10.91521 -10.69576 -10.56832 -10.20459 -10.13577 -9.77010 -9.53601 -9.19622 -8.76122 -8.49483 -7.57128 -6.33307 -4.36703 3.18321 3.21828 3.34237 3.36711 3.87069 4.06926 4.23975 4.67975 4.91515 5.02647 5.15147 5.17575 5.29332 5.54436 5.62415 5.71008 5.76585 5.93437 5.96115 6.14113 6.20443 6.24301 6.34089 6.48729 6.67498 6.75234 6.82471 6.84544 6.91307 7.09090 7.27115 7.30580 7.72469 8.19310 8.56869 8.74529 9.03942 9.29943 10.76735 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033354 B = 0.009127 C = 0.008669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.277736 B = 3067.099789 C = 3228.956372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.586 5.586 3 C 0.511 3.489 4 O -0.548 6.548 5 C -0.152 4.152 6 H 0.099 0.901 7 C -0.143 4.143 8 C 0.049 3.951 9 O -0.370 6.370 10 C 0.065 3.935 11 C 0.254 3.746 12 C -0.159 4.159 13 C -0.135 4.135 14 C -0.519 4.519 15 H 0.083 0.917 16 C 0.083 3.917 17 N -0.881 5.881 18 Si 0.888 3.112 19 H -0.290 1.290 20 H -0.304 1.304 21 H -0.246 1.246 22 H 0.037 0.963 23 H 0.103 0.897 24 H 0.046 0.954 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.034 0.966 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.141 12.567 2.172 12.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.317 5.317 3 C 0.297 3.703 4 O -0.428 6.428 5 C -0.174 4.174 6 H 0.118 0.882 7 C -0.181 4.181 8 C -0.028 4.028 9 O -0.288 6.288 10 C -0.013 4.013 11 C 0.173 3.827 12 C -0.216 4.216 13 C -0.193 4.193 14 C -0.557 4.557 15 H 0.101 0.899 16 C -0.122 4.122 17 N -0.517 5.517 18 Si 0.720 3.280 19 H -0.218 1.218 20 H -0.233 1.233 21 H -0.171 1.171 22 H 0.055 0.945 23 H 0.122 0.878 24 H 0.065 0.935 25 H 0.112 0.888 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.765 12.423 2.221 12.643 hybrid contribution -0.398 0.414 -1.257 1.382 sum 0.367 12.837 0.964 12.879 Atomic orbital electron populations 1.21732 0.81317 1.03369 1.00267 1.49252 1.06640 1.06221 1.69614 1.20138 0.87927 0.85023 0.77170 1.90542 1.14156 1.87046 1.51013 1.22828 1.00976 0.95382 0.98225 0.88246 1.22941 1.02002 0.94837 0.98307 1.23368 1.01836 0.93359 0.84204 1.89139 1.51073 1.50617 1.37993 1.23243 0.90089 0.93855 0.94084 1.18577 0.90504 0.81241 0.92343 1.22494 1.00020 1.01257 0.97853 1.21906 0.99367 1.00554 0.97477 1.21031 1.22262 1.09251 1.03112 0.89895 1.25137 0.93988 0.95007 0.98105 1.69908 1.23552 1.30722 1.27476 0.87183 0.75593 0.83518 0.81681 1.21811 1.23252 1.17074 0.94471 0.87811 0.93530 0.88839 0.90650 0.89197 0.92600 0.91590 0.88765 0.91676 0.92657 0.94731 0.93805 0.92757 0.93505 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.45 7.79 59.85 0.47 1.92 16 2 N -0.59 -12.41 1.40 -167.87 -0.23 -12.64 16 3 C 0.51 10.32 5.70 -10.99 -0.06 10.26 16 4 O -0.55 -12.48 12.06 5.55 0.07 -12.41 16 5 C -0.15 -2.38 2.57 -90.20 -0.23 -2.62 16 6 H 0.10 1.39 6.63 -51.93 -0.34 1.05 16 7 C -0.14 -2.00 6.61 -25.16 -0.17 -2.16 16 8 C 0.05 0.62 7.63 37.93 0.29 0.91 16 9 O -0.37 -5.83 11.65 -35.23 -0.41 -6.24 16 10 C 0.06 0.92 7.01 37.93 0.27 1.19 16 11 C 0.25 5.89 0.61 -132.98 -0.08 5.81 16 12 C -0.16 -3.72 7.21 37.16 0.27 -3.46 16 13 C -0.13 -2.89 8.42 37.16 0.31 -2.57 16 14 C -0.52 -13.47 7.02 -34.44 -0.24 -13.71 16 15 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 16 C 0.08 2.21 4.60 -17.82 -0.08 2.13 16 17 N -0.88 -24.92 13.96 55.43 0.77 -24.14 16 18 Si 0.89 21.40 20.90 -169.99 -3.55 17.84 16 19 H -0.29 -7.25 7.08 56.52 0.40 -6.85 16 20 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.25 -5.68 4.41 56.52 0.25 -5.43 16 22 H 0.04 0.73 4.91 -51.93 -0.26 0.47 16 23 H 0.10 2.18 6.25 -51.93 -0.32 1.86 16 24 H 0.05 0.70 6.42 -51.93 -0.33 0.37 16 25 H 0.09 1.52 6.83 -51.93 -0.35 1.17 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.41 7.87 -51.93 -0.41 1.00 16 31 H 0.06 1.52 5.98 -51.93 -0.31 1.21 16 32 H 0.05 1.26 8.12 -51.93 -0.42 0.84 16 33 H 0.03 0.83 2.94 -51.93 -0.15 0.68 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.05 1.00 6.82 -51.93 -0.35 0.65 16 37 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 271.69 15.07 4.09 4.09 Total: -1.00 -30.22 271.69 -4.03 -34.26 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.50 Total: 1.55 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 0.74 Total: -2.30 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.54 Total: -36.78 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.34 Total: -18.65 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -3.55 Total: 17.84 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.22 -4.03 -34.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259677417.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.645 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds