Wall clock time and date at job start Mon Mar 30 2020 04:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.34769 * 119.99692 * 2 1 4 4 O 1.21283 * 119.99691 * 185.02182 * 3 2 1 5 5 C 1.50699 * 120.00471 * 5.02789 * 3 2 1 6 6 H 1.09002 * 110.45538 * 328.62737 * 5 3 2 7 7 C 1.54508 * 110.51360 * 206.02260 * 5 3 2 8 8 C 1.54478 * 104.06518 * 241.21333 * 7 5 3 9 9 O 1.44426 * 104.80277 * 23.98156 * 8 7 5 10 10 C 1.44432 * 105.27156 * 319.48456 * 9 8 7 11 11 C 1.46495 * 119.99913 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47154 * 126.30579 * 11 2 1 13 13 C 1.52996 * 109.47092 * 246.30896 * 11 2 1 14 14 C 1.50698 * 109.47209 * 6.30644 * 11 2 1 15 15 H 1.08002 * 120.00246 * 244.52229 * 14 11 2 16 16 C 1.37881 * 120.00156 * 64.52183 * 14 11 2 17 17 N 1.31513 * 120.00464 * 181.47322 * 16 14 11 18 18 Si 1.86803 * 119.99724 * 1.47532 * 16 14 11 19 19 H 1.48505 * 109.47241 * 92.10654 * 18 16 14 20 20 H 1.48495 * 109.47062 * 212.10578 * 18 16 14 21 21 H 1.48499 * 109.46930 * 332.10583 * 18 16 14 22 22 H 1.08996 * 109.46810 * 86.17755 * 1 2 3 23 23 H 1.09002 * 109.47177 * 206.17639 * 1 2 3 24 24 H 1.09004 * 109.47206 * 326.17493 * 1 2 3 25 25 H 1.09002 * 110.50985 * 359.86212 * 7 5 3 26 26 H 1.09004 * 110.51166 * 122.56647 * 7 5 3 27 27 H 1.09006 * 110.37113 * 142.80718 * 8 7 5 28 28 H 1.08993 * 110.37715 * 265.03374 * 8 7 5 29 29 H 1.08999 * 110.37255 * 281.68253 * 10 9 8 30 30 H 1.09000 * 110.36801 * 159.34412 * 10 9 8 31 31 H 1.09001 * 109.46513 * 68.57397 * 12 11 2 32 32 H 1.08993 * 109.47157 * 188.57681 * 12 11 2 33 33 H 1.09000 * 109.46785 * 308.57956 * 12 11 2 34 34 H 1.08998 * 109.47810 * 60.00224 * 13 11 2 35 35 H 1.09002 * 109.46958 * 180.02562 * 13 11 2 36 36 H 1.09000 * 109.46959 * 300.00019 * 13 11 2 37 37 H 0.97000 * 120.00124 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3482 1.1692 -0.0919 5 6 1.3898 2.4698 0.1144 6 1 0.4063 2.3855 -0.3481 7 6 2.1965 3.6170 -0.5340 8 6 2.4561 4.5982 0.6306 9 8 2.3686 3.7874 1.8226 10 6 1.2575 2.8935 1.5940 11 6 2.1976 -1.2687 0.0006 12 6 3.1922 -1.2839 -1.1619 13 6 2.9545 -1.4200 1.3215 14 6 1.2257 -2.4099 -0.1550 15 1 1.1022 -3.1267 0.6434 16 6 0.4941 -2.5390 -1.3166 17 7 -0.3751 -3.5180 -1.4410 18 14 0.7377 -1.3231 -2.7137 19 1 1.7658 -1.8443 -3.6500 20 1 -0.5449 -1.1394 -3.4392 21 1 1.1858 -0.0190 -2.1625 22 1 -0.3633 0.0685 -1.0254 23 1 -0.3633 -0.9223 0.4533 24 1 -0.3634 0.8537 0.5721 25 1 3.1383 3.2425 -0.9351 26 1 1.6119 4.0999 -1.3171 27 1 3.4500 5.0372 0.5425 28 1 1.6968 5.3799 0.6448 29 1 0.3130 3.4127 1.7571 30 1 1.3305 2.0230 2.2460 31 1 3.9833 -0.5582 -0.9726 32 1 3.6268 -2.2791 -1.2553 33 1 2.6752 -1.0249 -2.0859 34 1 2.2459 -1.4093 2.1497 35 1 3.4998 -2.3638 1.3218 36 1 3.6574 -0.5945 1.4341 37 1 -0.8900 -3.6086 -2.2580 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259677417.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:58 Heat of formation + Delta-G solvation = -76.208175 kcal Electronic energy + Delta-G solvation = -19138.870203 eV Core-core repulsion = 16302.625649 eV Total energy + Delta-G solvation = -2836.244555 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.61898 -39.70188 -37.46850 -34.62984 -33.90902 -32.54742 -30.08943 -28.35191 -28.05320 -26.40816 -24.69975 -23.34499 -21.51568 -19.76215 -18.82642 -17.99876 -17.44662 -17.19101 -16.55031 -16.34875 -15.95188 -15.80204 -15.04390 -14.62746 -14.43490 -14.31489 -13.83306 -13.60088 -13.29879 -12.92509 -12.83176 -12.62489 -12.45373 -12.37910 -12.30532 -12.14762 -12.03405 -11.88013 -11.42685 -11.05952 -10.82785 -10.75848 -10.17189 -9.27443 -8.41614 -6.47365 1.24194 1.32838 1.42690 1.76301 2.22851 2.27929 3.03976 3.08585 3.51735 3.68064 3.96296 4.18643 4.25633 4.29083 4.39098 4.46651 4.51249 4.64500 4.67902 4.71136 4.72557 4.83548 4.85463 4.91820 4.94517 5.07450 5.16499 5.18516 5.27891 5.40501 5.45963 5.82462 5.89720 6.26245 6.55559 6.93702 7.21349 7.43678 8.72312 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033354 B = 0.009127 C = 0.008669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.277736 B = 3067.099789 C = 3228.956372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.595 5.595 3 C 0.504 3.496 4 O -0.579 6.579 5 C -0.152 4.152 6 H 0.124 0.876 7 C -0.142 4.142 8 C 0.049 3.951 9 O -0.399 6.399 10 C 0.066 3.934 11 C 0.252 3.748 12 C -0.155 4.155 13 C -0.126 4.126 14 C -0.514 4.514 15 H 0.051 0.949 16 C 0.050 3.950 17 N -0.922 5.922 18 Si 0.936 3.064 19 H -0.304 1.304 20 H -0.299 1.299 21 H -0.230 1.230 22 H 0.035 0.965 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.028 0.972 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.588 15.306 2.120 15.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.327 5.327 3 C 0.293 3.707 4 O -0.460 6.460 5 C -0.173 4.173 6 H 0.142 0.858 7 C -0.180 4.180 8 C -0.027 4.027 9 O -0.318 6.318 10 C -0.011 4.011 11 C 0.170 3.830 12 C -0.213 4.213 13 C -0.184 4.184 14 C -0.552 4.552 15 H 0.069 0.931 16 C -0.152 4.152 17 N -0.559 5.559 18 Si 0.767 3.233 19 H -0.233 1.233 20 H -0.227 1.227 21 H -0.154 1.154 22 H 0.053 0.947 23 H 0.097 0.903 24 H 0.111 0.889 25 H 0.082 0.918 26 H 0.124 0.876 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.124 0.876 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.026 15.187 2.183 15.343 hybrid contribution -0.116 -0.456 -1.179 1.270 sum -0.090 14.731 1.003 14.765 Atomic orbital electron populations 1.21807 0.79891 1.04242 1.00633 1.49043 1.07518 1.05935 1.70171 1.20916 0.87856 0.86064 0.75850 1.90527 1.15763 1.87646 1.52070 1.22912 1.01550 0.92843 0.99999 0.85826 1.22974 1.00825 0.94666 0.99558 1.23561 1.03462 0.93307 0.82419 1.89113 1.51963 1.51333 1.39411 1.23364 0.91415 0.93840 0.92471 1.18429 0.90010 0.81589 0.92991 1.22467 1.00052 1.01144 0.97607 1.21805 0.99205 1.00569 0.96846 1.21039 1.22473 1.09591 1.02114 0.93080 1.25606 0.93686 0.96092 0.99781 1.69994 1.25050 1.32606 1.28297 0.86419 0.75161 0.82588 0.79097 1.23338 1.22709 1.15397 0.94714 0.90266 0.88903 0.91750 0.87576 0.88721 0.89218 0.87635 0.90141 0.91576 0.92890 0.95381 0.93358 0.92556 0.93657 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.75 7.79 127.77 1.00 3.75 16 2 N -0.60 -24.23 1.40 -803.41 -1.12 -25.36 16 3 C 0.50 19.33 5.70 87.66 0.50 19.83 16 4 O -0.58 -25.74 12.06 -3.04 -0.04 -25.78 16 5 C -0.15 -4.18 2.57 -10.52 -0.03 -4.21 16 6 H 0.12 2.81 6.63 -2.39 -0.02 2.79 16 7 C -0.14 -3.47 6.61 31.61 0.21 -3.26 16 8 C 0.05 1.04 7.63 72.48 0.55 1.60 16 9 O -0.40 -11.38 11.65 -148.98 -1.74 -13.12 16 10 C 0.07 1.63 7.01 72.49 0.51 2.14 16 11 C 0.25 11.59 0.61 2.86 0.00 11.59 16 12 C -0.16 -7.22 7.21 71.98 0.52 -6.70 16 13 C -0.13 -5.37 8.42 71.98 0.61 -4.77 16 14 C -0.51 -27.02 7.02 25.60 0.18 -26.84 16 15 H 0.05 2.97 7.99 -2.91 -0.02 2.94 16 16 C 0.05 2.69 4.60 84.66 0.39 3.08 16 17 N -0.92 -52.90 13.96 21.45 0.30 -52.60 16 18 Si 0.94 43.76 20.90 68.60 1.43 45.20 16 19 H -0.30 -14.89 7.08 99.48 0.70 -14.18 16 20 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 21 H -0.23 -10.06 4.41 99.48 0.44 -9.62 16 22 H 0.03 1.26 4.91 -2.39 -0.01 1.25 16 23 H 0.08 3.26 6.25 -2.39 -0.01 3.25 16 24 H 0.09 2.43 6.42 -2.39 -0.02 2.42 16 25 H 0.06 1.97 6.83 -2.39 -0.02 1.96 16 26 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 27 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 2.19 7.87 -2.39 -0.02 2.17 16 31 H 0.07 3.06 5.98 -2.39 -0.01 3.04 16 32 H 0.05 2.42 8.12 -2.39 -0.02 2.40 16 33 H 0.03 1.32 2.94 -2.39 -0.01 1.32 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.04 1.92 6.82 -2.39 -0.02 1.91 16 37 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -65.79 271.69 4.06 -61.73 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.79 Total: 13.72 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 4.43 Total: -3.79 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -0.82 Total: -77.95 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -1.77 Total: -38.90 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.43 Total: 45.20 kcal Total: -65.79 4.06 -61.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259677417.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.479 kcal (2) G-P(sol) polarization free energy of solvation -65.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds