Wall clock time and date at job start Mon Mar 30 2020 04:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 120.00481 * 2 1 4 4 O 1.21277 * 120.00381 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99800 * 359.97438 * 3 2 1 6 6 H 1.08995 * 110.45706 * 57.39384 * 5 3 2 7 7 C 1.54500 * 110.51170 * 180.02562 * 5 3 2 8 8 C 1.54485 * 104.06342 * 118.64495 * 7 5 3 9 9 O 1.44422 * 104.80136 * 23.97949 * 8 7 5 10 10 C 1.44420 * 105.27574 * 319.48523 * 9 8 7 11 11 C 1.46503 * 119.99508 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47270 * 354.79706 * 11 2 1 13 13 C 1.52995 * 109.47134 * 114.80088 * 11 2 1 14 14 C 1.50698 * 109.46810 * 234.79755 * 11 2 1 15 15 H 1.08005 * 120.00266 * 1.39752 * 14 11 2 16 16 C 1.37885 * 119.99886 * 181.39562 * 14 11 2 17 17 N 1.31507 * 119.99904 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99924 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47144 * 59.99850 * 18 16 14 20 20 H 1.48499 * 109.46902 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46637 * 299.99945 * 18 16 14 22 22 H 1.08998 * 109.46724 * 90.64373 * 1 2 3 23 23 H 1.08998 * 109.47560 * 210.64439 * 1 2 3 24 24 H 1.09003 * 109.46418 * 330.64720 * 1 2 3 25 25 H 1.08999 * 110.51396 * 237.29245 * 7 5 3 26 26 H 1.09002 * 110.51340 * 0.02562 * 7 5 3 27 27 H 1.08999 * 110.37295 * 142.81376 * 8 7 5 28 28 H 1.09003 * 110.37098 * 265.03364 * 8 7 5 29 29 H 1.08995 * 110.37349 * 281.68356 * 10 9 8 30 30 H 1.08996 * 110.37189 * 159.34277 * 10 9 8 31 31 H 1.09001 * 109.46835 * 60.00048 * 12 11 2 32 32 H 1.08997 * 109.46837 * 180.02562 * 12 11 2 33 33 H 1.08998 * 109.47293 * 300.00507 * 12 11 2 34 34 H 1.09000 * 109.47512 * 59.99653 * 13 11 2 35 35 H 1.09006 * 109.47085 * 179.97438 * 13 11 2 36 36 H 1.09001 * 109.47009 * 299.99405 * 13 11 2 37 37 H 0.96997 * 119.99878 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3856 2.4723 -0.0006 6 1 0.7182 2.5273 0.8594 7 6 2.3681 3.6646 -0.0011 8 6 2.0525 4.4106 -1.3166 9 8 0.6910 4.0449 -1.6305 10 6 0.5925 2.6389 -1.3158 11 6 2.1974 -1.2688 0.0006 12 6 1.2083 -2.4286 0.1319 13 6 2.9764 -1.4086 -1.3088 14 6 3.1579 -1.2938 1.1616 15 1 3.2008 -0.4586 1.8451 16 6 3.9819 -2.3830 1.3513 17 7 3.9300 -3.3997 0.5188 18 14 5.1720 -2.4143 2.7909 19 1 4.4127 -2.3128 4.0630 20 1 5.9380 -3.6863 2.7722 21 1 6.1107 -1.2688 2.6819 22 1 -0.3633 -0.0115 -1.0276 23 1 -0.3634 -0.8841 0.5238 24 1 -0.3632 0.8958 0.5038 25 1 2.1853 4.3106 0.8576 26 1 3.3989 3.3101 -0.0014 27 1 2.1320 5.4878 -1.1704 28 1 2.7269 4.0851 -2.1086 29 1 1.0417 2.0402 -2.1082 30 1 -0.4496 2.3551 -1.1690 31 1 0.5136 -2.4105 -0.7079 32 1 1.7533 -3.3726 0.1328 33 1 0.6533 -2.3290 1.0647 34 1 3.6811 -0.5823 -1.4024 35 1 3.5217 -2.3525 -1.3082 36 1 2.2817 -1.3905 -2.1485 37 1 4.5094 -4.1660 0.6525 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259677419.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:00 Heat of formation + Delta-G solvation = -70.899010 kcal Electronic energy + Delta-G solvation = -18796.186189 eV Core-core repulsion = 15960.171857 eV Total energy + Delta-G solvation = -2836.014332 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.02530 -38.17437 -35.65253 -33.28445 -31.84170 -30.22433 -28.70658 -27.03329 -25.29648 -24.64652 -23.19520 -22.26244 -19.72924 -18.08993 -17.16536 -16.20266 -16.00224 -15.35224 -15.09934 -14.61979 -14.21790 -13.93751 -13.37545 -12.83905 -12.71430 -12.29982 -11.91133 -11.69220 -11.54623 -11.32556 -11.18197 -11.13308 -10.84547 -10.78909 -10.52458 -10.46907 -10.41248 -10.07732 -9.81444 -9.74319 -9.15300 -8.61456 -8.27643 -7.48243 -5.96564 -4.00738 3.35361 3.38810 3.43264 3.49286 3.84964 4.16040 4.49246 4.68816 4.97827 5.07997 5.23748 5.31544 5.37026 5.49024 5.65034 5.75649 5.81189 5.88454 5.94607 6.09781 6.17726 6.29021 6.57266 6.67647 6.74290 6.82582 6.94353 7.19474 7.39977 7.55434 7.79334 7.91406 8.18062 8.27905 8.61227 8.95802 9.19455 9.63634 11.06327 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032100 B = 0.007894 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.070203 B = 3546.291865 C = 4008.413749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.597 5.597 3 C 0.513 3.487 4 O -0.517 6.517 5 C -0.147 4.147 6 H 0.100 0.900 7 C -0.146 4.146 8 C 0.046 3.954 9 O -0.379 6.379 10 C 0.060 3.940 11 C 0.291 3.709 12 C -0.140 4.140 13 C -0.146 4.146 14 C -0.488 4.488 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.896 5.896 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.043 0.957 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.016 0.984 32 H 0.095 0.905 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.094 0.906 36 H 0.004 0.996 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.444 8.875 -2.210 11.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.330 5.330 3 C 0.298 3.702 4 O -0.392 6.392 5 C -0.169 4.169 6 H 0.118 0.882 7 C -0.184 4.184 8 C -0.031 4.031 9 O -0.298 6.298 10 C -0.017 4.017 11 C 0.210 3.790 12 C -0.198 4.198 13 C -0.205 4.205 14 C -0.527 4.527 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.536 5.536 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.062 0.938 23 H 0.095 0.905 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.121 0.879 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.035 0.965 32 H 0.113 0.887 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.112 0.888 36 H 0.023 0.977 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.864 8.794 -2.319 11.394 hybrid contribution 0.639 -0.200 0.924 1.141 sum -6.225 8.594 -1.395 10.703 Atomic orbital electron populations 1.21809 0.82419 1.02530 1.00533 1.48356 1.05385 1.07483 1.71799 1.19866 0.88063 0.84466 0.77837 1.90662 1.13479 1.86409 1.48695 1.22731 0.98620 0.95299 1.00251 0.88228 1.22932 1.02187 0.95329 0.97977 1.23437 0.83626 0.99958 0.96065 1.89070 1.29180 1.24352 1.87194 1.23392 1.00676 0.83015 0.94631 1.18230 0.88852 0.77192 0.94725 1.22084 0.97787 1.02885 0.97058 1.22117 0.99459 1.04240 0.94640 1.21142 1.19263 1.02599 1.09659 0.92513 1.24785 0.96947 0.95507 0.96634 1.69761 1.39785 1.07349 1.36732 0.86555 0.81203 0.77097 0.82532 1.20563 1.21368 1.20273 0.93836 0.90498 0.92566 0.90774 0.87893 0.89267 0.92161 0.91844 0.88620 0.96451 0.88662 0.94726 0.93740 0.88795 0.97744 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 8.27 59.85 0.49 1.60 16 2 N -0.60 -12.34 2.82 -167.87 -0.47 -12.81 16 3 C 0.51 10.61 6.18 -10.99 -0.07 10.54 16 4 O -0.52 -12.85 12.38 5.56 0.07 -12.78 16 5 C -0.15 -2.30 2.57 -90.20 -0.23 -2.53 16 6 H 0.10 1.40 7.30 -51.93 -0.38 1.02 16 7 C -0.15 -2.13 6.67 -25.16 -0.17 -2.30 16 8 C 0.05 0.60 7.63 37.94 0.29 0.89 16 9 O -0.38 -5.53 11.65 -35.23 -0.41 -5.94 16 10 C 0.06 0.84 6.08 37.94 0.23 1.07 16 11 C 0.29 7.08 0.76 -132.97 -0.10 6.97 16 12 C -0.14 -3.14 6.97 37.16 0.26 -2.88 16 13 C -0.15 -3.66 8.24 37.16 0.31 -3.35 16 14 C -0.49 -13.46 6.87 -34.44 -0.24 -13.70 16 15 H 0.06 1.65 7.16 -52.48 -0.38 1.28 16 16 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 17 N -0.90 -24.69 9.36 55.43 0.52 -24.18 16 18 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H 0.04 0.60 8.05 -51.93 -0.42 0.18 16 23 H 0.08 1.19 5.73 -51.93 -0.30 0.89 16 24 H 0.06 0.72 5.97 -51.93 -0.31 0.41 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.10 1.74 6.50 -51.93 -0.34 1.40 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.96 7.86 -51.93 -0.41 0.55 16 30 H 0.10 1.12 7.32 -51.93 -0.38 0.74 16 31 H 0.02 0.33 7.62 -51.93 -0.40 -0.06 16 32 H 0.09 2.37 6.18 -51.93 -0.32 2.05 16 33 H 0.03 0.73 7.11 -51.93 -0.37 0.36 16 34 H 0.04 1.18 6.56 -51.93 -0.34 0.84 16 35 H 0.09 2.53 5.96 -51.93 -0.31 2.22 16 36 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 282.63 15.07 4.26 4.26 Total: -1.00 -30.61 282.63 -5.84 -36.45 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.47 Total: 0.13 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 0.68 Total: -2.10 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.05 Total: -36.99 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.34 Total: -18.72 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.61 -5.84 -36.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259677419.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.447 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds