Wall clock time and date at job start Mon Mar 30 2020 04:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 120.00481 * 2 1 4 4 O 1.21277 * 120.00381 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99800 * 359.97438 * 3 2 1 6 6 H 1.08995 * 110.45706 * 57.39384 * 5 3 2 7 7 C 1.54500 * 110.51170 * 180.02562 * 5 3 2 8 8 C 1.54485 * 104.06342 * 118.64495 * 7 5 3 9 9 O 1.44422 * 104.80136 * 23.97949 * 8 7 5 10 10 C 1.44420 * 105.27574 * 319.48523 * 9 8 7 11 11 C 1.46503 * 119.99508 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47270 * 354.79706 * 11 2 1 13 13 C 1.52995 * 109.47134 * 114.80088 * 11 2 1 14 14 C 1.50698 * 109.46810 * 234.79755 * 11 2 1 15 15 H 1.08005 * 120.00266 * 1.39752 * 14 11 2 16 16 C 1.37885 * 119.99886 * 181.39562 * 14 11 2 17 17 N 1.31507 * 119.99904 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99924 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47144 * 59.99850 * 18 16 14 20 20 H 1.48499 * 109.46902 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46637 * 299.99945 * 18 16 14 22 22 H 1.08998 * 109.46724 * 90.64373 * 1 2 3 23 23 H 1.08998 * 109.47560 * 210.64439 * 1 2 3 24 24 H 1.09003 * 109.46418 * 330.64720 * 1 2 3 25 25 H 1.08999 * 110.51396 * 237.29245 * 7 5 3 26 26 H 1.09002 * 110.51340 * 0.02562 * 7 5 3 27 27 H 1.08999 * 110.37295 * 142.81376 * 8 7 5 28 28 H 1.09003 * 110.37098 * 265.03364 * 8 7 5 29 29 H 1.08995 * 110.37349 * 281.68356 * 10 9 8 30 30 H 1.08996 * 110.37189 * 159.34277 * 10 9 8 31 31 H 1.09001 * 109.46835 * 60.00048 * 12 11 2 32 32 H 1.08997 * 109.46837 * 180.02562 * 12 11 2 33 33 H 1.08998 * 109.47293 * 300.00507 * 12 11 2 34 34 H 1.09000 * 109.47512 * 59.99653 * 13 11 2 35 35 H 1.09006 * 109.47085 * 179.97438 * 13 11 2 36 36 H 1.09001 * 109.47009 * 299.99405 * 13 11 2 37 37 H 0.96997 * 119.99878 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3856 2.4723 -0.0006 6 1 0.7182 2.5273 0.8594 7 6 2.3681 3.6646 -0.0011 8 6 2.0525 4.4106 -1.3166 9 8 0.6910 4.0449 -1.6305 10 6 0.5925 2.6389 -1.3158 11 6 2.1974 -1.2688 0.0006 12 6 1.2083 -2.4286 0.1319 13 6 2.9764 -1.4086 -1.3088 14 6 3.1579 -1.2938 1.1616 15 1 3.2008 -0.4586 1.8451 16 6 3.9819 -2.3830 1.3513 17 7 3.9300 -3.3997 0.5188 18 14 5.1720 -2.4143 2.7909 19 1 4.4127 -2.3128 4.0630 20 1 5.9380 -3.6863 2.7722 21 1 6.1107 -1.2688 2.6819 22 1 -0.3633 -0.0115 -1.0276 23 1 -0.3634 -0.8841 0.5238 24 1 -0.3632 0.8958 0.5038 25 1 2.1853 4.3106 0.8576 26 1 3.3989 3.3101 -0.0014 27 1 2.1320 5.4878 -1.1704 28 1 2.7269 4.0851 -2.1086 29 1 1.0417 2.0402 -2.1082 30 1 -0.4496 2.3551 -1.1690 31 1 0.5136 -2.4105 -0.7079 32 1 1.7533 -3.3726 0.1328 33 1 0.6533 -2.3290 1.0647 34 1 3.6811 -0.5823 -1.4024 35 1 3.5217 -2.3525 -1.3082 36 1 2.2817 -1.3905 -2.1485 37 1 4.5094 -4.1660 0.6525 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259677419.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:00 Heat of formation + Delta-G solvation = -91.412869 kcal Electronic energy + Delta-G solvation = -18797.075737 eV Core-core repulsion = 15960.171857 eV Total energy + Delta-G solvation = -2836.903880 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.42718 -39.54939 -37.39826 -35.06311 -33.26658 -31.89074 -29.93568 -28.64351 -27.33743 -26.35983 -24.46655 -23.52053 -21.30890 -19.73990 -18.68006 -17.65590 -17.45813 -17.06529 -16.48963 -16.02112 -15.83252 -15.52491 -14.91629 -14.48413 -13.98291 -13.79603 -13.42032 -13.35465 -13.11193 -13.06027 -12.81667 -12.68795 -12.49760 -12.35858 -12.28939 -12.11622 -11.99090 -11.75707 -11.69405 -11.07569 -10.83920 -10.49738 -10.18194 -9.17010 -8.04615 -6.14332 1.36173 1.39589 1.46129 1.93830 2.34749 2.50396 3.02878 3.19421 3.50243 3.81349 3.89967 4.11113 4.25056 4.33173 4.47966 4.69014 4.72138 4.74815 4.77402 4.82230 4.87066 4.89126 5.00982 5.03488 5.04589 5.09807 5.25758 5.51137 5.63497 5.72024 5.74633 5.97848 6.25204 6.35044 6.78618 7.01020 7.44548 7.67459 8.95011 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032100 B = 0.007894 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.070203 B = 3546.291865 C = 4008.413749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.604 5.604 3 C 0.502 3.498 4 O -0.572 6.572 5 C -0.139 4.139 6 H 0.125 0.875 7 C -0.148 4.148 8 C 0.048 3.952 9 O -0.384 6.384 10 C 0.065 3.935 11 C 0.285 3.715 12 C -0.127 4.127 13 C -0.133 4.133 14 C -0.501 4.501 15 H 0.032 0.968 16 C 0.021 3.979 17 N -0.907 5.907 18 Si 0.944 3.056 19 H -0.272 1.272 20 H -0.278 1.278 21 H -0.291 1.291 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.119 0.881 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.128 0.872 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.016 0.984 35 H 0.070 0.930 36 H 0.024 0.976 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.603 9.913 -2.046 13.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.336 5.336 3 C 0.290 3.710 4 O -0.452 6.452 5 C -0.161 4.161 6 H 0.142 0.858 7 C -0.186 4.186 8 C -0.029 4.029 9 O -0.302 6.302 10 C -0.012 4.012 11 C 0.202 3.798 12 C -0.185 4.185 13 C -0.192 4.192 14 C -0.540 4.540 15 H 0.050 0.950 16 C -0.177 4.177 17 N -0.547 5.547 18 Si 0.771 3.229 19 H -0.197 1.197 20 H -0.203 1.203 21 H -0.217 1.217 22 H 0.086 0.914 23 H 0.096 0.904 24 H 0.106 0.894 25 H 0.115 0.885 26 H 0.091 0.909 27 H 0.136 0.864 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.146 0.854 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.035 0.965 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.072 9.830 -2.157 13.549 hybrid contribution 1.323 -0.491 0.848 1.646 sum -7.749 9.339 -1.309 12.205 Atomic orbital electron populations 1.22135 0.78998 1.04261 1.02588 1.48350 1.07601 1.06283 1.71339 1.20748 0.87807 0.86026 0.76443 1.90637 1.16106 1.87423 1.50993 1.22732 0.98769 0.92333 1.02249 0.85758 1.22944 1.00280 0.95514 0.99861 1.23516 0.82988 1.01482 0.94891 1.89074 1.29599 1.24362 1.87202 1.23421 1.01974 0.82792 0.92972 1.18051 0.89270 0.79777 0.92724 1.21876 0.97458 1.00493 0.98665 1.21937 0.99266 1.01704 0.96309 1.21295 1.20577 1.01660 1.10477 0.95008 1.25362 0.98223 0.95557 0.98595 1.69859 1.40086 1.07433 1.37362 0.85839 0.79520 0.76774 0.80757 1.19720 1.20258 1.21729 0.91430 0.90384 0.89392 0.88535 0.90913 0.86350 0.92947 0.93401 0.85423 0.93605 0.91384 0.93938 0.96454 0.91090 0.95717 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.71 8.27 127.77 1.06 2.76 16 2 N -0.60 -24.17 2.82 -803.42 -2.26 -26.44 16 3 C 0.50 20.58 6.18 87.66 0.54 21.12 16 4 O -0.57 -29.41 12.38 -3.02 -0.04 -29.45 16 5 C -0.14 -4.04 2.57 -10.52 -0.03 -4.07 16 6 H 0.12 3.00 7.30 -2.39 -0.02 2.99 16 7 C -0.15 -4.10 6.67 31.61 0.21 -3.89 16 8 C 0.05 1.15 7.63 72.49 0.55 1.70 16 9 O -0.38 -9.98 11.65 -148.98 -1.74 -11.71 16 10 C 0.07 1.64 6.08 72.49 0.44 2.08 16 11 C 0.28 13.80 0.76 2.85 0.00 13.80 16 12 C -0.13 -5.53 6.97 71.98 0.50 -5.03 16 13 C -0.13 -6.79 8.24 71.98 0.59 -6.19 16 14 C -0.50 -28.15 6.87 25.60 0.18 -27.97 16 15 H 0.03 1.90 7.16 -2.91 -0.02 1.88 16 16 C 0.02 1.18 5.15 84.66 0.44 1.62 16 17 N -0.91 -50.67 9.36 21.45 0.20 -50.47 16 18 Si 0.94 45.70 29.54 68.60 2.03 47.72 16 19 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 22 H 0.07 1.56 8.05 -2.39 -0.02 1.54 16 23 H 0.08 2.14 5.73 -2.39 -0.01 2.13 16 24 H 0.09 1.85 5.97 -2.39 -0.01 1.84 16 25 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 26 H 0.07 2.50 6.50 -2.39 -0.02 2.49 16 27 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.36 7.86 -2.39 -0.02 1.34 16 30 H 0.13 2.37 7.32 -2.39 -0.02 2.35 16 31 H 0.05 1.69 7.62 -2.39 -0.02 1.67 16 32 H 0.07 3.36 6.18 -2.39 -0.01 3.35 16 33 H 0.04 1.74 7.11 -2.39 -0.02 1.72 16 34 H 0.02 0.92 6.56 -2.39 -0.02 0.90 16 35 H 0.07 3.91 5.96 -2.38 -0.01 3.90 16 36 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -68.20 282.63 3.73 -64.47 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.06 Total: 9.96 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 4.48 Total: -4.07 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -2.06 Total: -76.91 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -1.77 Total: -41.17 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -68.20 3.73 -64.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259677419.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.946 kcal (2) G-P(sol) polarization free energy of solvation -68.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds