Wall clock time and date at job start Mon Mar 30 2020 03:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99812 * 2 1 4 4 H 1.48500 * 109.46759 * 269.99649 * 3 2 1 5 5 H 1.48490 * 109.47347 * 30.00206 * 3 2 1 6 6 H 1.48504 * 109.46883 * 150.00307 * 3 2 1 7 7 C 1.37872 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99803 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00278 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.54066 * 59.89457 * 9 7 2 11 11 C 1.53090 * 109.50693 * 299.78762 * 9 7 2 12 12 O 1.43019 * 109.25850 * 183.21760 * 11 9 7 13 13 C 1.43015 * 113.74110 * 58.66841 * 12 11 9 14 14 C 1.53103 * 109.25472 * 301.33137 * 13 12 11 15 15 N 1.47014 * 109.50414 * 180.02562 * 9 7 2 16 16 C 1.46896 * 111.00454 * 302.33000 * 15 9 7 17 17 H 1.08994 * 109.52275 * 62.53272 * 16 15 9 18 18 C 1.53181 * 109.51919 * 302.41142 * 16 15 9 19 19 C 1.53176 * 109.03560 * 183.04962 * 18 16 15 20 20 C 1.53095 * 109.16286 * 56.98068 * 19 18 16 21 21 O 1.42902 * 109.41528 * 302.39400 * 20 19 18 22 22 C 1.42895 * 114.09785 * 61.15752 * 21 20 19 23 23 H 0.97000 * 120.00196 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.51180 * 63.27935 * 11 9 7 25 25 H 1.09007 * 109.54187 * 303.16810 * 11 9 7 26 26 H 1.08996 * 109.50671 * 181.40038 * 13 12 11 27 27 H 1.08997 * 109.54058 * 61.28579 * 13 12 11 28 28 H 1.08994 * 109.50691 * 296.91172 * 14 13 12 29 29 H 1.09005 * 109.54167 * 176.80413 * 14 13 12 30 30 H 1.08996 * 109.54405 * 63.18678 * 18 16 15 31 31 H 1.08999 * 109.61813 * 302.95941 * 18 16 15 32 32 H 1.09001 * 109.52789 * 176.89009 * 19 18 16 33 33 H 1.09007 * 109.52321 * 297.07724 * 19 18 16 34 34 H 1.08995 * 109.48092 * 62.37615 * 20 19 18 35 35 H 1.09004 * 109.48253 * 182.40879 * 20 19 18 36 36 H 1.09010 * 109.48185 * 178.86083 * 22 21 20 37 37 H 1.09000 * 109.48534 * 58.82375 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6221 -2.5571 -0.8889 11 6 0.3750 -2.5837 1.2522 12 8 -0.2797 -3.8548 1.2850 13 6 0.6203 -4.9663 1.2861 14 6 1.4987 -4.9058 0.0336 15 7 2.2057 -3.6172 -0.0005 16 6 3.1053 -3.5413 -1.1593 17 1 3.6959 -2.6270 -1.1027 18 6 2.2792 -3.5380 -2.4493 19 6 3.2292 -3.5357 -3.6509 20 6 4.1584 -4.7489 -3.5591 21 8 4.8738 -4.7069 -2.3228 22 6 4.0393 -4.7544 -1.1639 23 1 -0.4850 0.8400 0.0004 24 1 -0.3718 -1.7901 1.2284 25 1 0.9971 -2.4717 2.1403 26 1 0.0509 -5.8957 1.2867 27 1 1.2501 -4.9246 2.1747 28 1 0.8739 -5.0021 -0.8542 29 1 2.2247 -5.7186 0.0577 30 1 1.6523 -2.6468 -2.4785 31 1 1.6503 -4.4276 -2.4834 32 1 2.6504 -3.5891 -4.5730 33 1 3.8224 -2.6212 -3.6445 34 1 3.5677 -5.6637 -3.6063 35 1 4.8650 -4.7292 -4.3889 36 1 4.6600 -4.7385 -0.2679 37 1 3.4468 -5.6692 -1.1796 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259750729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:35 Heat of formation + Delta-G solvation = -84.785381 kcal Electronic energy + Delta-G solvation = -18952.266627 eV Core-core repulsion = 16115.650136 eV Total energy + Delta-G solvation = -2836.616490 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.68220 -37.95923 -35.17321 -33.15074 -32.31598 -29.89814 -29.63387 -25.94367 -25.01834 -24.72137 -22.29632 -22.06583 -20.29229 -18.56178 -16.68464 -16.01538 -15.90940 -15.31172 -15.08767 -14.63452 -14.24965 -13.94168 -13.74785 -13.54824 -13.51413 -12.66699 -12.41117 -12.14048 -12.03578 -11.28025 -11.06213 -10.88041 -10.84788 -10.64945 -10.59964 -10.26574 -10.18022 -9.96387 -9.81942 -9.12210 -9.00267 -8.67220 -8.39136 -7.26634 -6.14595 -4.18512 3.25079 3.32458 3.36502 4.08586 4.32422 4.76920 4.90174 5.17511 5.19700 5.24880 5.27088 5.39949 5.51263 5.67851 5.73743 5.77409 5.90461 5.96716 5.98878 6.06185 6.29398 6.31771 6.37393 6.43378 6.60993 6.74429 6.81041 6.94784 7.27057 7.40192 7.50086 7.67643 7.86572 8.12690 8.16500 8.49670 8.88309 9.47080 10.93343 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.010670 C = 0.007641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.757838 B = 2623.528658 C = 3663.392053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.066 0.934 9 C 0.188 3.812 10 H 0.015 0.985 11 C 0.067 3.933 12 O -0.404 6.404 13 C 0.068 3.932 14 C 0.010 3.990 15 N -0.524 5.524 16 C 0.066 3.934 17 H 0.099 0.901 18 C -0.152 4.152 19 C -0.150 4.150 20 C 0.061 3.939 21 O -0.386 6.386 22 C 0.063 3.937 23 H 0.264 0.736 24 H 0.123 0.877 25 H 0.033 0.967 26 H 0.078 0.922 27 H 0.047 0.953 28 H 0.032 0.968 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.302 -8.520 -3.584 10.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.545 4.545 8 H 0.084 0.916 9 C 0.082 3.918 10 H 0.032 0.968 11 C -0.009 4.009 12 O -0.323 6.323 13 C -0.010 4.010 14 C -0.119 4.119 15 N -0.249 5.249 16 C -0.043 4.043 17 H 0.117 0.883 18 C -0.191 4.191 19 C -0.188 4.188 20 C -0.015 4.015 21 O -0.303 6.303 22 C -0.013 4.013 23 H 0.074 0.926 24 H 0.140 0.860 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.435 -8.354 -3.124 9.961 hybrid contribution -0.155 0.906 -0.832 1.240 sum 4.280 -7.448 -3.956 9.457 Atomic orbital electron populations 1.69844 1.05887 1.27012 1.50459 1.24969 0.94931 0.99350 0.94861 0.86472 0.79850 0.82896 0.78136 1.20686 1.21146 1.19716 1.21041 0.93385 0.89202 1.50824 0.91600 1.19867 0.89523 0.87974 0.94419 0.96771 1.23163 0.97565 0.82757 0.97395 1.87910 1.33844 1.15560 1.95017 1.22428 0.92004 0.90215 0.96366 1.22831 0.96798 0.94061 0.98194 1.62510 1.21102 1.02127 1.39178 1.22160 0.94468 0.99301 0.88379 0.88284 1.22222 0.98738 1.02817 0.95307 1.22140 0.98450 0.99378 0.98872 1.22543 0.95256 0.96912 0.86830 1.87891 1.33710 1.94848 1.13895 1.22784 0.93685 0.96917 0.87954 0.92592 0.85963 0.94827 0.90400 0.93510 0.94950 0.91254 0.89736 0.92964 0.91653 0.90976 0.93848 0.89486 0.88591 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.65 11.37 55.43 0.63 -24.02 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.51 -13.30 7.96 -34.44 -0.27 -13.58 16 8 H 0.07 1.75 6.52 -52.49 -0.34 1.40 16 9 C 0.19 4.63 1.43 -68.75 -0.10 4.53 16 10 H 0.01 0.40 6.48 -51.93 -0.34 0.06 16 11 C 0.07 1.66 6.02 37.20 0.22 1.88 16 12 O -0.40 -9.17 10.83 -35.23 -0.38 -9.55 16 13 C 0.07 1.24 7.01 37.21 0.26 1.50 16 14 C 0.01 0.18 4.86 -3.71 -0.02 0.16 16 15 N -0.52 -10.96 4.58 -219.62 -1.01 -11.96 16 16 C 0.07 1.26 2.16 -67.57 -0.15 1.12 16 17 H 0.10 2.13 6.43 -51.93 -0.33 1.80 16 18 C -0.15 -2.76 4.55 -26.55 -0.12 -2.88 16 19 C -0.15 -2.26 6.14 -26.59 -0.16 -2.42 16 20 C 0.06 0.84 6.84 37.21 0.25 1.10 16 21 O -0.39 -6.27 10.77 -35.23 -0.38 -6.65 16 22 C 0.06 1.03 5.77 37.21 0.21 1.25 16 23 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 24 H 0.12 3.30 6.19 -51.93 -0.32 2.98 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.03 0.61 6.54 -51.93 -0.34 0.27 16 29 H 0.07 1.08 6.02 -51.93 -0.31 0.76 16 30 H 0.08 1.81 6.62 -51.93 -0.34 1.46 16 31 H 0.05 0.92 6.49 -51.93 -0.34 0.58 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.52 8.14 -51.92 -0.42 1.10 16 37 H 0.05 0.68 6.14 -51.93 -0.32 0.37 16 LS Contribution 277.33 15.07 4.18 4.18 Total: -1.00 -27.87 277.33 -7.44 -35.31 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.50 Total: 2.72 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 0.04 Total: -5.82 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.38 Total: -35.98 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.76 Total: -16.20 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.87 -7.44 -35.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259750729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.473 kcal (2) G-P(sol) polarization free energy of solvation -27.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds